Wall clock time and date at job start Sun Mar 29 2020 22:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.48505 * 2 1 4 4 C 1.53091 * 109.48010 * 239.96482 * 2 1 3 5 5 C 1.53181 * 109.16574 * 182.40588 * 4 2 1 6 6 H 1.08995 * 109.61626 * 297.07496 * 5 4 2 7 7 C 1.52997 * 109.54358 * 176.84703 * 5 4 2 8 8 C 1.53007 * 109.46883 * 175.44430 * 7 5 4 9 9 N 1.46902 * 109.46771 * 179.97438 * 8 7 5 10 10 C 1.46904 * 110.99709 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.46798 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00546 * 0.27742 * 11 10 9 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46986 * 90.00256 * 15 13 11 17 17 H 1.48496 * 109.47029 * 210.00273 * 15 13 11 18 18 H 1.48499 * 109.47352 * 330.00102 * 15 13 11 19 19 C 1.53181 * 109.03172 * 56.98272 * 5 4 2 20 20 C 1.53088 * 109.16369 * 303.01626 * 19 5 4 21 21 O 1.42906 * 109.48250 * 120.02304 * 2 1 3 22 22 H 1.09008 * 109.46792 * 299.97251 * 1 2 3 23 23 H 1.08994 * 109.47334 * 59.97258 * 1 2 3 24 24 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.52235 * 62.50643 * 4 2 1 26 26 H 1.09004 * 109.52494 * 302.31372 * 4 2 1 27 27 H 1.09001 * 109.47320 * 55.44951 * 7 5 4 28 28 H 1.09003 * 109.47371 * 295.44618 * 7 5 4 29 29 H 1.08996 * 109.46694 * 60.00619 * 8 7 5 30 30 H 1.08990 * 109.47393 * 300.00051 * 8 7 5 31 31 H 1.00901 * 110.99720 * 56.05189 * 9 8 7 32 32 H 1.08992 * 109.47223 * 60.00411 * 10 9 8 33 33 H 1.08997 * 109.46992 * 299.99963 * 10 9 8 34 34 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.52286 * 62.93130 * 19 5 4 36 36 H 1.08999 * 109.51888 * 183.11173 * 19 5 4 37 37 H 1.08999 * 109.48113 * 177.59459 * 20 19 5 38 38 H 1.09001 * 109.48378 * 297.62835 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 3.5711 -0.7710 -1.2122 6 1 3.9702 0.2428 -1.2416 7 6 4.0876 -1.5597 -2.4171 8 6 5.6168 -1.5112 -2.4409 9 7 6.1127 -2.2690 -3.5975 10 6 7.5806 -2.2448 -3.6525 11 6 8.0513 -3.0300 -4.8494 12 1 7.3320 -3.4963 -5.5064 13 6 9.4003 -3.1480 -5.1094 14 7 10.2760 -2.5757 -4.3125 15 14 9.9839 -4.1220 -6.5927 16 1 10.0895 -3.2194 -7.7672 17 1 11.3140 -4.7153 -6.3032 18 1 9.0121 -5.2056 -6.8870 19 6 4.0176 -1.4601 0.0810 20 6 3.4308 -0.7092 1.2790 21 8 2.0066 -0.6741 1.1665 22 1 -0.3633 0.5135 0.8903 23 1 -0.3634 0.5142 -0.8897 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7148 -0.1845 -2.1398 26 1 1.6443 -1.7376 -1.2708 27 1 3.6959 -1.1199 -3.3343 28 1 3.7581 -2.5960 -2.3415 29 1 6.0085 -1.9510 -1.5238 30 1 5.9463 -0.4750 -2.5165 31 1 5.7126 -1.9213 -4.4561 32 1 7.9856 -2.6896 -2.7436 33 1 7.9240 -1.2138 -3.7368 34 1 11.2250 -2.6590 -4.4953 35 1 3.6614 -2.4902 0.0865 36 1 5.1058 -1.4498 0.1421 37 1 3.7101 -1.2201 2.2005 38 1 3.8193 0.3091 1.2957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591759432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:44 Heat of formation + Delta-G solvation = -98.349518 kcal Electronic energy + Delta-G solvation = -15738.232962 eV Core-core repulsion = 13192.399000 eV Total energy + Delta-G solvation = -2545.833962 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57727 -37.74146 -35.75776 -34.31527 -33.65266 -30.81393 -28.88626 -27.60020 -24.72555 -23.98027 -23.19630 -21.81238 -20.96773 -18.57309 -17.24712 -16.92689 -16.86199 -16.44375 -15.68935 -15.62330 -15.29252 -14.91699 -14.54932 -13.89677 -13.66237 -13.51897 -13.21773 -13.12830 -12.86114 -12.73256 -12.62730 -12.47394 -12.17434 -12.02121 -11.99279 -11.71788 -11.35906 -11.20619 -11.07859 -10.68114 -10.34055 -9.15050 -8.24563 -6.36414 1.40517 1.42660 1.54649 2.39084 2.87974 3.08539 3.43129 3.73084 3.86646 3.97554 4.04128 4.21022 4.30679 4.36600 4.42297 4.56841 4.63941 4.66317 4.76651 4.84296 4.86728 4.95832 5.00782 5.05883 5.10332 5.14719 5.20630 5.27072 5.31287 5.34300 5.49652 5.60173 5.99827 6.33653 6.42552 6.70774 6.87201 7.34854 8.87228 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.068374 B = 0.003979 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.411299 B = 7035.925584 C = 7301.967498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 H 0.061 0.939 4 C -0.138 4.138 5 C -0.084 4.084 6 H 0.071 0.929 7 C -0.096 4.096 8 C 0.059 3.941 9 N -0.692 5.692 10 C 0.207 3.793 11 C -0.539 4.539 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.976 3.024 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.152 4.152 20 C 0.062 3.938 21 O -0.400 6.400 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.014 0.986 31 H 0.335 0.665 32 H -0.002 1.002 33 H -0.040 1.040 34 H 0.266 0.734 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.579 6.071 7.960 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.022 3.978 3 H 0.079 0.921 4 C -0.176 4.176 5 C -0.103 4.103 6 H 0.089 0.911 7 C -0.134 4.134 8 C -0.070 4.070 9 N -0.322 5.322 10 C 0.079 3.921 11 C -0.577 4.577 12 H 0.083 0.917 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.800 3.200 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.190 4.190 20 C -0.014 4.014 21 O -0.320 6.320 22 H 0.082 0.918 23 H 0.106 0.894 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.152 0.848 32 H 0.016 0.984 33 H -0.023 1.023 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.548 5.403 8.458 20.216 hybrid contribution 1.284 0.574 -0.977 1.713 sum -16.264 5.977 7.481 18.873 Atomic orbital electron populations 1.21777 0.91955 1.02935 1.03246 1.22261 0.95949 0.94977 0.84597 0.92069 1.22241 0.94467 1.01962 0.98924 1.21151 0.95839 0.99276 0.94060 0.91051 1.21478 0.92893 1.00751 0.98230 1.22010 0.96188 0.94534 0.94285 1.60553 1.08235 1.57672 1.05788 1.19209 0.83861 0.93050 0.95972 1.21566 0.92373 1.33047 1.10691 0.91663 1.26009 0.96803 0.96831 1.00224 1.70095 1.02142 1.45575 1.39683 0.85280 0.77536 0.78713 0.78450 1.19527 1.20631 1.18821 1.22276 1.01170 1.00300 0.95245 1.22625 0.80360 0.99948 0.98463 1.87888 1.21756 1.78462 1.43909 0.91773 0.89392 0.92263 0.89581 0.91498 0.91361 0.91814 0.92505 0.96821 0.84821 0.98371 1.02270 0.92543 0.91722 0.91181 0.87988 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.56 71.98 0.69 -1.39 16 2 C 0.08 1.47 3.26 30.62 0.10 1.57 16 3 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.14 -2.65 4.70 30.69 0.14 -2.51 16 5 C -0.08 -1.91 2.28 -10.67 -0.02 -1.93 16 6 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 7 C -0.10 -2.62 4.95 30.60 0.15 -2.47 16 8 C 0.06 2.13 5.44 86.31 0.47 2.60 16 9 N -0.69 -30.76 6.49 -517.94 -3.36 -34.12 16 10 C 0.21 11.47 5.44 85.55 0.47 11.93 16 11 C -0.54 -31.43 9.32 25.60 0.24 -31.19 16 12 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 13 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 14 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 15 Si 0.98 44.65 29.54 68.60 2.03 46.68 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 C -0.15 -3.51 5.09 30.68 0.16 -3.35 16 20 C 0.06 1.27 6.84 72.01 0.49 1.77 16 21 O -0.40 -9.11 10.41 -148.98 -1.55 -10.66 16 22 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 23 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 2.12 6.64 -2.39 -0.02 2.10 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.33 13.96 8.72 -89.69 -0.78 13.17 16 32 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 34 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.72 6.74 -2.39 -0.02 1.70 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -65.44 303.76 0.97 -64.47 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.22 Total: 15.19 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 3.34 Total: -24.54 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -3.08 Total: -91.13 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.55 Total: -10.66 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -65.44 0.97 -64.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591759432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.878 kcal (2) G-P(sol) polarization free energy of solvation -65.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds