Wall clock time and date at job start Sun Mar 29 2020 22:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.48258 * 2 1 4 4 C 1.53115 * 109.47990 * 119.94163 * 2 1 3 5 5 C 1.53179 * 109.15618 * 177.50179 * 4 2 1 6 6 H 1.08994 * 109.54256 * 63.06485 * 5 4 2 7 7 C 1.53001 * 109.54117 * 183.24185 * 5 4 2 8 8 C 1.53002 * 109.47040 * 184.82115 * 7 5 4 9 9 N 1.46895 * 109.46962 * 180.02562 * 8 7 5 10 10 C 1.46904 * 110.99508 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46874 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.53179 * 109.11110 * 303.15576 * 5 4 2 20 20 C 1.53095 * 109.16430 * 56.93125 * 19 5 4 21 21 O 1.42895 * 109.41843 * 302.39605 * 20 19 5 22 22 H 1.08996 * 109.47390 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47250 * 300.02711 * 1 2 3 24 24 H 1.09004 * 109.46887 * 60.02473 * 1 2 3 25 25 H 1.09002 * 109.44830 * 57.64371 * 4 2 1 26 26 H 1.08999 * 109.59809 * 297.45224 * 4 2 1 27 27 H 1.09002 * 109.46839 * 64.82544 * 7 5 4 28 28 H 1.08998 * 109.46899 * 304.82533 * 7 5 4 29 29 H 1.09008 * 109.46415 * 60.00085 * 8 7 5 30 30 H 1.08997 * 109.47209 * 300.00637 * 8 7 5 31 31 H 1.00890 * 111.00188 * 56.04706 * 9 8 7 32 32 H 1.09003 * 109.47066 * 60.00292 * 10 9 8 33 33 H 1.08996 * 109.47319 * 299.99765 * 10 9 8 34 34 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 35 35 H 1.08996 * 109.52380 * 176.84685 * 19 5 4 36 36 H 1.09004 * 109.51781 * 297.03228 * 19 5 4 37 37 H 1.09003 * 109.47402 * 62.37800 * 20 19 5 38 38 H 1.08994 * 109.48104 * 182.39231 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7205 1.2508 5 6 3.5710 -0.7710 1.2123 6 1 3.9702 0.2428 1.2417 7 6 4.0876 -1.5597 2.4173 8 6 5.6165 -1.5076 2.4436 9 7 6.1124 -2.2653 3.6002 10 6 7.5800 -2.2367 3.6581 11 6 8.0509 -3.0231 4.8544 12 1 7.3318 -3.4964 5.5066 13 6 9.3996 -3.1374 5.1169 14 7 10.2752 -2.5607 4.3230 15 14 9.9832 -4.1128 6.5992 16 1 10.0837 -3.2124 7.7759 17 1 11.3158 -4.7014 6.3111 18 1 9.0142 -5.2000 6.8893 19 6 4.0176 -1.4601 -0.0808 20 6 3.4307 -0.7093 -1.2790 21 8 2.0066 -0.6742 -1.1664 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5142 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 1.6430 -1.7352 1.2729 26 1 1.7162 -0.1817 2.1411 27 1 3.7606 -2.5967 2.3400 28 1 3.6932 -1.1217 3.3342 29 1 5.9433 -0.4706 2.5208 30 1 6.0107 -1.9455 1.5266 31 1 5.7692 -3.2140 3.5851 32 1 7.9201 -1.2047 3.7445 33 1 7.9882 -2.6791 2.7495 34 1 9.9721 -2.0546 3.5530 35 1 5.1058 -1.4500 -0.1419 36 1 3.6612 -2.4902 -0.0864 37 1 3.8193 0.3089 -1.2956 38 1 3.7102 -1.2201 -2.2004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591759434.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:48 Heat of formation + Delta-G solvation = -81.665357 kcal Electronic energy + Delta-G solvation = -15772.271370 eV Core-core repulsion = 13227.160888 eV Total energy + Delta-G solvation = -2545.110482 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.73561 -36.40161 -34.41656 -32.96935 -32.42721 -29.35365 -27.75307 -25.54989 -23.53641 -22.78803 -21.67347 -20.80787 -20.05954 -16.86469 -16.45807 -15.99321 -15.35638 -15.02265 -14.49381 -14.14973 -13.86141 -13.68267 -13.02052 -12.80604 -12.58424 -12.48410 -12.13441 -11.94404 -11.46500 -11.43653 -11.24490 -11.06211 -10.72694 -10.65026 -10.54504 -10.28247 -10.25770 -10.08340 -9.50770 -8.62871 -8.40930 -7.40537 -6.38536 -4.07310 3.44425 3.48057 3.62180 3.64068 4.44929 4.54613 4.64044 4.76605 4.82741 4.99528 5.12416 5.21846 5.26158 5.38193 5.38660 5.41041 5.52235 5.58841 5.64757 5.75160 5.81262 5.84759 5.94181 5.98388 6.03601 6.11449 6.23149 6.46778 6.49793 6.94297 7.10694 7.14878 7.78191 8.15218 8.46369 8.57656 8.86657 9.64777 11.01404 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.068445 B = 0.003993 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.989278 B = 7010.637887 C = 7272.169755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.055 0.945 4 C -0.143 4.143 5 C -0.088 4.088 6 H 0.070 0.930 7 C -0.108 4.108 8 C 0.057 3.943 9 N -0.686 5.686 10 C 0.183 3.817 11 C -0.596 4.596 12 H 0.056 0.944 13 C 0.013 3.987 14 N -0.914 5.914 15 Si 1.077 2.923 16 H -0.287 1.287 17 H -0.285 1.285 18 H -0.288 1.288 19 C -0.153 4.153 20 C 0.062 3.938 21 O -0.384 6.384 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.018 0.982 31 H 0.330 0.670 32 H 0.017 0.983 33 H -0.025 1.025 34 H 0.267 0.733 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.975 4.593 -9.549 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.073 0.927 4 C -0.181 4.181 5 C -0.107 4.107 6 H 0.088 0.912 7 C -0.146 4.146 8 C -0.073 4.073 9 N -0.316 5.316 10 C 0.056 3.944 11 C -0.634 4.634 12 H 0.075 0.925 13 C -0.190 4.190 14 N -0.551 5.551 15 Si 0.905 3.095 16 H -0.214 1.214 17 H -0.211 1.211 18 H -0.214 1.214 19 C -0.191 4.191 20 C -0.014 4.014 21 O -0.303 6.303 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.147 0.853 32 H 0.035 0.965 33 H -0.007 1.007 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.808 4.549 -8.424 18.481 hybrid contribution -0.843 0.071 -1.381 1.620 sum -16.651 4.619 -9.805 19.868 Atomic orbital electron populations 1.21764 0.93291 1.02875 1.02239 1.22098 0.94830 0.94977 0.85371 0.92665 1.22282 0.95876 1.01903 0.98056 1.21189 0.94719 0.99827 0.94975 0.91164 1.21585 0.95913 0.99908 0.97196 1.21954 0.93749 0.99091 0.92483 1.60549 1.12710 1.18131 1.40164 1.19658 0.82358 0.96564 0.95839 1.22048 0.94386 1.35261 1.11739 0.92539 1.25897 0.93045 0.97600 1.02484 1.70765 1.36798 1.32083 1.15443 0.83429 0.75602 0.75796 0.74654 1.21382 1.21051 1.21433 1.22312 1.01563 1.00445 0.94770 1.22567 0.80813 0.99549 0.98507 1.87896 1.21227 1.78108 1.43074 0.91846 0.91120 0.92048 0.91049 0.90855 0.92321 0.91209 0.92130 0.96378 0.85348 0.96473 1.00734 0.92297 0.90482 0.91094 0.93364 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.56 37.16 0.36 -0.85 16 2 C 0.08 0.86 3.26 -26.67 -0.09 0.78 16 3 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.14 -1.51 4.71 -26.58 -0.13 -1.63 16 5 C -0.09 -1.05 2.27 -90.43 -0.21 -1.25 16 6 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.11 -1.53 4.95 -26.73 -0.13 -1.67 16 8 C 0.06 1.02 5.45 -3.83 -0.02 1.00 16 9 N -0.69 -15.26 6.49 -115.05 -0.75 -16.00 16 10 C 0.18 4.92 4.75 -4.97 -0.02 4.90 16 11 C -0.60 -17.50 9.32 -34.44 -0.32 -17.82 16 12 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 13 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 14 N -0.91 -28.46 13.65 55.43 0.76 -27.70 16 15 Si 1.08 25.74 29.90 -169.99 -5.08 20.66 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.15 -1.78 5.10 -26.59 -0.14 -1.91 16 20 C 0.06 0.66 6.84 37.21 0.25 0.91 16 21 O -0.38 -4.59 10.41 -35.23 -0.37 -4.95 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.02 0.32 6.65 -51.93 -0.35 -0.02 16 31 H 0.33 7.06 8.72 -39.30 -0.34 6.72 16 32 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 33 H -0.02 -0.70 8.01 -51.93 -0.42 -1.11 16 34 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 35 H 0.08 0.93 6.74 -51.93 -0.35 0.58 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -31.61 302.46 -8.29 -39.89 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.87 Total: 0.79 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -0.54 Total: -17.24 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.01 Total: -43.70 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.37 Total: -4.95 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.61 -8.29 -39.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591759434.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.773 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds