Wall clock time and date at job start Sun Mar 29 2020 22:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.48258 * 2 1 4 4 C 1.53115 * 109.47990 * 119.94163 * 2 1 3 5 5 C 1.53179 * 109.15618 * 177.50179 * 4 2 1 6 6 H 1.08994 * 109.54256 * 63.06485 * 5 4 2 7 7 C 1.53001 * 109.54117 * 183.24185 * 5 4 2 8 8 C 1.53002 * 109.47040 * 184.82115 * 7 5 4 9 9 N 1.46895 * 109.46962 * 180.02562 * 8 7 5 10 10 C 1.46904 * 110.99508 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46874 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.53179 * 109.11110 * 303.15576 * 5 4 2 20 20 C 1.53095 * 109.16430 * 56.93125 * 19 5 4 21 21 O 1.42895 * 109.41843 * 302.39605 * 20 19 5 22 22 H 1.08996 * 109.47390 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47250 * 300.02711 * 1 2 3 24 24 H 1.09004 * 109.46887 * 60.02473 * 1 2 3 25 25 H 1.09002 * 109.44830 * 57.64371 * 4 2 1 26 26 H 1.08999 * 109.59809 * 297.45224 * 4 2 1 27 27 H 1.09002 * 109.46839 * 64.82544 * 7 5 4 28 28 H 1.08998 * 109.46899 * 304.82533 * 7 5 4 29 29 H 1.09008 * 109.46415 * 60.00085 * 8 7 5 30 30 H 1.08997 * 109.47209 * 300.00637 * 8 7 5 31 31 H 1.00890 * 111.00188 * 56.04706 * 9 8 7 32 32 H 1.09003 * 109.47066 * 60.00292 * 10 9 8 33 33 H 1.08996 * 109.47319 * 299.99765 * 10 9 8 34 34 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 35 35 H 1.08996 * 109.52380 * 176.84685 * 19 5 4 36 36 H 1.09004 * 109.51781 * 297.03228 * 19 5 4 37 37 H 1.09003 * 109.47402 * 62.37800 * 20 19 5 38 38 H 1.08994 * 109.48104 * 182.39231 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7205 1.2508 5 6 3.5710 -0.7710 1.2123 6 1 3.9702 0.2428 1.2417 7 6 4.0876 -1.5597 2.4173 8 6 5.6165 -1.5076 2.4436 9 7 6.1124 -2.2653 3.6002 10 6 7.5800 -2.2367 3.6581 11 6 8.0509 -3.0231 4.8544 12 1 7.3318 -3.4964 5.5066 13 6 9.3996 -3.1374 5.1169 14 7 10.2752 -2.5607 4.3230 15 14 9.9832 -4.1128 6.5992 16 1 10.0837 -3.2124 7.7759 17 1 11.3158 -4.7014 6.3111 18 1 9.0142 -5.2000 6.8893 19 6 4.0176 -1.4601 -0.0808 20 6 3.4307 -0.7093 -1.2790 21 8 2.0066 -0.6742 -1.1664 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5142 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 1.6430 -1.7352 1.2729 26 1 1.7162 -0.1817 2.1411 27 1 3.7606 -2.5967 2.3400 28 1 3.6932 -1.1217 3.3342 29 1 5.9433 -0.4706 2.5208 30 1 6.0107 -1.9455 1.5266 31 1 5.7692 -3.2140 3.5851 32 1 7.9201 -1.2047 3.7445 33 1 7.9882 -2.6791 2.7495 34 1 9.9721 -2.0546 3.5530 35 1 5.1058 -1.4500 -0.1419 36 1 3.6612 -2.4902 -0.0864 37 1 3.8193 0.3089 -1.2956 38 1 3.7102 -1.2201 -2.2004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591759434.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:47 Heat of formation + Delta-G solvation = -102.757786 kcal Electronic energy + Delta-G solvation = -15773.186007 eV Core-core repulsion = 13227.160888 eV Total energy + Delta-G solvation = -2546.025119 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.62691 -37.90625 -35.98781 -34.41566 -33.68742 -30.73655 -28.80105 -27.31412 -24.79531 -24.08721 -23.46379 -21.86707 -21.04377 -19.04331 -17.31944 -16.92846 -16.75014 -16.16796 -15.95402 -15.59471 -15.41270 -14.99657 -14.55072 -14.23977 -13.79881 -13.47540 -13.19816 -13.07673 -12.90704 -12.82199 -12.68901 -12.49140 -12.12040 -12.04796 -11.91052 -11.76122 -11.35771 -11.19253 -10.80744 -10.64382 -10.38203 -9.28438 -8.75040 -6.46195 1.52871 1.62358 1.80880 2.54199 2.83963 3.10026 3.31279 3.69837 3.75148 3.90945 3.99004 4.14364 4.20703 4.31415 4.41388 4.48570 4.55878 4.60384 4.67617 4.72761 4.78709 4.82184 4.88819 4.97551 5.01128 5.03904 5.08077 5.15474 5.26662 5.31414 5.42286 5.68689 5.97290 6.29655 6.33869 6.50734 6.63758 7.36554 8.64858 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.068445 B = 0.003993 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.989278 B = 7010.637887 C = 7272.169755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.080 3.920 3 H 0.061 0.939 4 C -0.138 4.138 5 C -0.084 4.084 6 H 0.071 0.929 7 C -0.095 4.095 8 C 0.058 3.942 9 N -0.687 5.687 10 C 0.193 3.807 11 C -0.614 4.614 12 H 0.057 0.943 13 C -0.038 4.038 14 N -0.936 5.936 15 Si 1.128 2.872 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.267 1.267 19 C -0.152 4.152 20 C 0.062 3.938 21 O -0.399 6.399 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.336 0.664 32 H -0.005 1.005 33 H -0.044 1.044 34 H 0.253 0.747 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.226 4.429 -9.048 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.022 3.978 3 H 0.079 0.921 4 C -0.176 4.176 5 C -0.103 4.103 6 H 0.090 0.910 7 C -0.133 4.133 8 C -0.071 4.071 9 N -0.317 5.317 10 C 0.065 3.935 11 C -0.652 4.652 12 H 0.075 0.925 13 C -0.236 4.236 14 N -0.573 5.573 15 Si 0.948 3.052 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.190 4.190 20 C -0.014 4.014 21 O -0.319 6.319 22 H 0.078 0.922 23 H 0.106 0.894 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.153 0.847 32 H 0.013 0.987 33 H -0.027 1.027 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.098 4.399 -7.944 19.359 hybrid contribution -0.491 0.160 -1.590 1.671 sum -17.589 4.559 -9.533 20.519 Atomic orbital electron populations 1.21776 0.91898 1.02966 1.03273 1.22260 0.95987 0.94979 0.84541 0.92093 1.22243 0.94393 1.02026 0.98939 1.21146 0.95928 0.99377 0.93879 0.91027 1.21469 0.92760 1.00655 0.98421 1.22043 0.96337 0.97879 0.90851 1.60454 1.09733 1.18901 1.42627 1.19377 0.85189 0.94587 0.94378 1.22417 0.94878 1.35493 1.12411 0.92493 1.27564 0.93568 0.97755 1.04668 1.70903 1.37287 1.33270 1.15850 0.82801 0.75687 0.75199 0.71484 1.19746 1.20659 1.19215 1.22282 1.01076 1.00328 0.95284 1.22618 0.80413 0.99967 0.98413 1.87887 1.21702 1.78448 1.43886 0.92215 0.89417 0.91727 0.91423 0.89641 0.91966 0.91229 0.92789 0.96238 0.84697 0.98724 1.02673 0.93756 0.91284 0.91643 0.92600 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.56 71.98 0.69 -1.37 16 2 C 0.08 1.46 3.26 30.63 0.10 1.56 16 3 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.14 -2.63 4.71 30.69 0.14 -2.49 16 5 C -0.08 -1.89 2.27 -10.67 -0.02 -1.91 16 6 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 7 C -0.10 -2.59 4.95 30.60 0.15 -2.44 16 8 C 0.06 2.07 5.45 86.30 0.47 2.54 16 9 N -0.69 -30.61 6.49 -517.92 -3.36 -33.97 16 10 C 0.19 10.60 4.75 85.56 0.41 11.01 16 11 C -0.61 -36.21 9.32 25.60 0.24 -35.98 16 12 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 13 C -0.04 -2.26 5.46 84.65 0.46 -1.79 16 14 N -0.94 -58.93 13.65 21.45 0.29 -58.64 16 15 Si 1.13 50.85 29.90 68.60 2.05 52.90 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 C -0.15 -3.38 5.10 30.69 0.16 -3.22 16 20 C 0.06 1.24 6.84 72.01 0.49 1.73 16 21 O -0.40 -8.91 10.41 -148.98 -1.55 -10.46 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.02 0.70 6.65 -2.39 -0.02 0.68 16 31 H 0.34 14.26 8.72 -89.70 -0.78 13.48 16 32 H -0.01 -0.31 8.01 -2.39 -0.02 -0.33 16 33 H -0.04 -2.56 8.01 -2.39 -0.02 -2.58 16 34 H 0.25 16.20 7.22 -92.71 -0.67 15.53 16 35 H 0.07 1.63 6.74 -2.39 -0.02 1.61 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.04 302.46 1.04 -66.00 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.32 Total: 16.53 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 3.29 Total: -32.35 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -3.07 Total: -92.61 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.55 Total: -10.46 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.90 kcal Total: -67.04 1.04 -66.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591759434.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.760 kcal (2) G-P(sol) polarization free energy of solvation -67.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds