Wall clock time and date at job start Sun Mar 29 2020 22:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46843 * 2 1 4 4 O 1.42897 * 109.46630 * 119.99275 * 2 1 3 5 5 C 1.42904 * 113.99656 * 150.00056 * 4 2 1 6 6 H 1.09006 * 110.62832 * 26.89625 * 5 4 2 7 7 C 1.55141 * 110.70758 * 263.60147 * 5 4 2 8 8 C 1.54906 * 101.65329 * 205.96207 * 7 5 4 9 9 N 1.47844 * 104.79510 * 37.07301 * 8 7 5 10 10 C 1.46896 * 110.99565 * 213.63553 * 9 8 7 11 11 C 1.52996 * 109.47256 * 290.83892 * 10 9 8 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.47444 * 108.56541 * 335.90262 * 9 8 7 21 21 H 1.08999 * 109.47216 * 300.00565 * 1 2 3 22 22 H 1.09006 * 109.46555 * 60.00466 * 1 2 3 23 23 H 1.08994 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47482 * 239.99904 * 2 1 3 25 25 H 1.09000 * 109.47361 * 299.99516 * 3 2 1 26 26 H 1.08999 * 109.47676 * 59.99717 * 3 2 1 27 27 H 1.09003 * 109.47068 * 179.97438 * 3 2 1 28 28 H 1.09003 * 110.99306 * 324.05786 * 7 5 4 29 29 H 1.09005 * 110.98837 * 87.83658 * 7 5 4 30 30 H 1.09000 * 110.37628 * 278.23871 * 8 7 5 31 31 H 1.08999 * 110.37036 * 155.90089 * 8 7 5 32 32 H 1.09004 * 109.46774 * 170.84091 * 10 9 8 33 33 H 1.09000 * 109.47723 * 50.84479 * 10 9 8 34 34 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 35 35 H 1.08994 * 109.47405 * 300.00209 * 11 10 9 36 36 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.89058 * 120.39918 * 20 9 8 38 38 H 1.09005 * 109.88613 * 241.42415 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.2660 -1.3244 0.9888 6 1 3.8472 -0.8298 0.2105 7 6 3.0652 -2.8267 0.6578 8 6 4.3935 -3.4396 1.1672 9 7 4.7151 -2.6779 2.3929 10 6 6.1675 -2.5271 2.5529 11 6 6.7888 -3.8870 2.8775 12 6 8.2788 -3.7321 3.0423 13 1 8.7368 -2.7608 2.9275 14 6 9.0566 -4.8294 3.3459 15 7 8.4989 -6.0121 3.4862 16 14 10.9024 -4.6360 3.5578 17 1 11.2782 -3.2144 3.3502 18 1 11.2899 -5.0549 4.9288 19 1 11.6065 -5.4849 2.5633 20 6 4.0526 -1.3630 2.3159 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8935 -0.5138 -0.8899 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 2.2129 -3.2357 1.2005 29 1 2.9511 -2.9781 -0.4157 30 1 5.1802 -3.3119 0.4237 31 1 4.2590 -4.4957 1.4011 32 1 6.3730 -1.8304 3.3657 33 1 6.5971 -2.1429 1.6278 34 1 6.5833 -4.5837 2.0648 35 1 6.3594 -4.2712 3.8027 36 1 9.0461 -6.7842 3.6994 37 1 3.3687 -1.2426 3.1559 38 1 4.8001 -0.5698 2.3298 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592133343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:31 Heat of formation + Delta-G solvation = -59.298012 kcal Electronic energy + Delta-G solvation = -15948.455145 eV Core-core repulsion = 13404.314583 eV Total energy + Delta-G solvation = -2544.140561 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31555 -37.33073 -33.63625 -32.63478 -31.07534 -28.83164 -27.69448 -27.27955 -24.25989 -21.81168 -21.26690 -20.80462 -19.81862 -17.13160 -16.37160 -15.69143 -14.96178 -14.71080 -14.35097 -14.03770 -13.81138 -13.39839 -12.87084 -12.59587 -12.50134 -12.33821 -12.05536 -11.94311 -11.75802 -11.18715 -11.13724 -11.02737 -10.94404 -10.82954 -10.51451 -10.47252 -9.85757 -9.52760 -9.28229 -9.09488 -8.32542 -7.70900 -5.97753 -4.00205 3.32197 3.39495 3.43432 3.56813 4.41508 4.55902 4.67674 4.77597 4.92439 5.00802 5.05553 5.13695 5.35519 5.38006 5.38278 5.58448 5.61378 5.64957 5.76236 5.83487 5.94812 6.01025 6.02815 6.17881 6.20930 6.30855 6.42691 6.48471 6.98636 7.29541 7.50037 7.53820 7.79172 7.91798 8.10798 8.45437 9.07430 9.63359 11.13695 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.065322 B = 0.004456 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.545626 B = 6282.346648 C = 6516.169973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 C -0.175 4.175 4 O -0.369 6.369 5 C 0.069 3.931 6 H 0.064 0.936 7 C -0.150 4.150 8 C 0.049 3.951 9 N -0.525 5.525 10 C 0.057 3.943 11 C 0.028 3.972 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.046 3.954 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.021 0.979 34 H 0.016 0.984 35 H 0.025 0.975 36 H 0.260 0.740 37 H 0.082 0.918 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.559 11.224 -8.290 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.233 4.233 4 O -0.288 6.288 5 C 0.010 3.990 6 H 0.082 0.918 7 C -0.188 4.188 8 C -0.079 4.079 9 N -0.250 5.250 10 C -0.070 4.070 11 C -0.009 4.009 12 C -0.561 4.561 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.083 4.083 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.034 0.966 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.792 10.784 -7.634 19.099 hybrid contribution 1.571 0.474 -0.839 1.843 sum -12.220 11.258 -8.474 18.652 Atomic orbital electron populations 1.21850 0.93750 1.02683 1.02280 1.22093 0.94936 0.92349 0.88517 1.22322 1.01620 0.96950 1.02392 1.87966 1.36318 1.69505 1.35005 1.23452 0.84848 0.92436 0.98272 0.91759 1.23209 0.99493 0.95364 1.00720 1.22921 0.94616 0.99515 0.90817 1.63726 1.11843 1.13339 1.36127 1.22581 0.83857 1.01865 0.98673 1.19061 0.94251 0.90057 0.97547 1.21241 0.92571 0.94337 1.47913 0.92774 1.25000 0.98587 0.95320 0.95445 1.69989 1.35377 0.99137 1.48687 0.86544 0.85659 0.78101 0.77723 1.19793 1.20970 1.21050 1.22844 0.97062 0.91958 0.96415 0.91817 0.91531 0.91976 0.92418 0.91883 0.91752 0.92510 0.89907 0.91401 0.93491 0.89856 0.92054 0.96112 0.96559 0.95651 0.93064 0.89950 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.56 37.16 0.36 -0.92 16 2 C 0.08 0.81 3.18 -26.73 -0.08 0.73 16 3 C -0.18 -1.60 9.53 37.16 0.35 -1.24 16 4 O -0.37 -4.94 9.71 -35.23 -0.34 -5.28 16 5 C 0.07 0.95 3.24 -24.91 -0.08 0.87 16 6 H 0.06 0.84 7.77 -51.93 -0.40 0.43 16 7 C -0.15 -2.09 6.80 -24.59 -0.17 -2.25 16 8 C 0.05 0.84 5.78 -2.30 -0.01 0.83 16 9 N -0.53 -10.06 5.16 -231.26 -1.19 -11.26 16 10 C 0.06 1.25 4.50 -3.83 -0.02 1.23 16 11 C 0.03 0.75 5.02 -27.88 -0.14 0.61 16 12 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 16 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 20 C 0.05 0.73 6.64 -2.84 -0.02 0.71 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.56 7.78 -51.93 -0.40 0.16 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.55 8.11 -51.93 -0.42 0.12 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.82 7.62 -51.93 -0.40 0.43 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 33 H 0.02 0.44 7.85 -51.93 -0.41 0.03 16 34 H 0.02 0.45 7.49 -51.93 -0.39 0.06 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 38 H 0.05 0.85 7.55 -51.93 -0.39 0.46 16 LS Contribution 307.43 15.07 4.63 4.63 Total: -1.00 -30.63 307.43 -8.41 -39.03 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -6.99 Total: -4.34 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -0.22 Total: -13.16 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.46 Total: -37.69 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.34 Total: -5.28 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.63 -8.41 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592133343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.267 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds