Wall clock time and date at job start Sun Mar 29 2020 22:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46843 * 2 1 4 4 O 1.42897 * 109.46630 * 119.99275 * 2 1 3 5 5 C 1.42904 * 113.99656 * 150.00056 * 4 2 1 6 6 H 1.09006 * 110.62832 * 26.89625 * 5 4 2 7 7 C 1.55141 * 110.70758 * 263.60147 * 5 4 2 8 8 C 1.54906 * 101.65329 * 205.96207 * 7 5 4 9 9 N 1.47844 * 104.79510 * 37.07301 * 8 7 5 10 10 C 1.46896 * 110.99565 * 213.63553 * 9 8 7 11 11 C 1.52996 * 109.47256 * 290.83892 * 10 9 8 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.47444 * 108.56541 * 335.90262 * 9 8 7 21 21 H 1.08999 * 109.47216 * 300.00565 * 1 2 3 22 22 H 1.09006 * 109.46555 * 60.00466 * 1 2 3 23 23 H 1.08994 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47482 * 239.99904 * 2 1 3 25 25 H 1.09000 * 109.47361 * 299.99516 * 3 2 1 26 26 H 1.08999 * 109.47676 * 59.99717 * 3 2 1 27 27 H 1.09003 * 109.47068 * 179.97438 * 3 2 1 28 28 H 1.09003 * 110.99306 * 324.05786 * 7 5 4 29 29 H 1.09005 * 110.98837 * 87.83658 * 7 5 4 30 30 H 1.09000 * 110.37628 * 278.23871 * 8 7 5 31 31 H 1.08999 * 110.37036 * 155.90089 * 8 7 5 32 32 H 1.09004 * 109.46774 * 170.84091 * 10 9 8 33 33 H 1.09000 * 109.47723 * 50.84479 * 10 9 8 34 34 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 35 35 H 1.08994 * 109.47405 * 300.00209 * 11 10 9 36 36 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.89058 * 120.39918 * 20 9 8 38 38 H 1.09005 * 109.88613 * 241.42415 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.2660 -1.3244 0.9888 6 1 3.8472 -0.8298 0.2105 7 6 3.0652 -2.8267 0.6578 8 6 4.3935 -3.4396 1.1672 9 7 4.7151 -2.6779 2.3929 10 6 6.1675 -2.5271 2.5529 11 6 6.7888 -3.8870 2.8775 12 6 8.2788 -3.7321 3.0423 13 1 8.7368 -2.7608 2.9275 14 6 9.0566 -4.8294 3.3459 15 7 8.4989 -6.0121 3.4862 16 14 10.9024 -4.6360 3.5578 17 1 11.2782 -3.2144 3.3502 18 1 11.2899 -5.0549 4.9288 19 1 11.6065 -5.4849 2.5633 20 6 4.0526 -1.3630 2.3159 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8935 -0.5138 -0.8899 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 2.2129 -3.2357 1.2005 29 1 2.9511 -2.9781 -0.4157 30 1 5.1802 -3.3119 0.4237 31 1 4.2590 -4.4957 1.4011 32 1 6.3730 -1.8304 3.3657 33 1 6.5971 -2.1429 1.6278 34 1 6.5833 -4.5837 2.0648 35 1 6.3594 -4.2712 3.8027 36 1 9.0461 -6.7842 3.6994 37 1 3.3687 -1.2426 3.1559 38 1 4.8001 -0.5698 2.3298 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592133343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:31 Heat of formation + Delta-G solvation = -79.186530 kcal Electronic energy + Delta-G solvation = -15949.317576 eV Core-core repulsion = 13404.314583 eV Total energy + Delta-G solvation = -2545.002992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50671 -38.51109 -35.52347 -33.91242 -32.58959 -30.40356 -29.07816 -28.04852 -26.19852 -23.32711 -22.36219 -21.90406 -21.44453 -18.56847 -18.09037 -16.97591 -16.54133 -15.95819 -15.79681 -15.41560 -15.15565 -14.51856 -14.32089 -13.91023 -13.84095 -13.49238 -13.28515 -13.06191 -12.94733 -12.82912 -12.67578 -12.43762 -12.33037 -12.11414 -11.90515 -11.75971 -11.48932 -11.38525 -11.22922 -10.57201 -10.42810 -9.22321 -8.20254 -6.32044 1.40331 1.41171 1.54424 2.39931 2.60545 3.12600 3.13155 3.59545 3.73742 3.96999 4.06347 4.16115 4.29533 4.30695 4.36462 4.42173 4.55920 4.68573 4.74470 4.79891 4.86263 4.92429 4.95224 4.99310 5.01112 5.10088 5.13605 5.30238 5.35314 5.45216 5.63201 5.78073 6.05672 6.16689 6.30187 6.36293 6.85272 7.37251 8.92281 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.065322 B = 0.004456 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.545626 B = 6282.346648 C = 6516.169973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 C -0.173 4.173 4 O -0.384 6.384 5 C 0.079 3.921 6 H 0.079 0.921 7 C -0.137 4.137 8 C 0.046 3.954 9 N -0.544 5.544 10 C 0.075 3.925 11 C 0.036 3.964 12 C -0.545 4.545 13 H 0.061 0.939 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.044 3.956 21 H 0.058 0.942 22 H 0.089 0.911 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.027 0.973 34 H -0.006 1.006 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.078 0.922 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.507 12.764 -9.457 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 C -0.230 4.230 4 O -0.303 6.303 5 C 0.020 3.980 6 H 0.096 0.904 7 C -0.175 4.175 8 C -0.082 4.082 9 N -0.270 5.270 10 C -0.053 4.053 11 C -0.001 4.001 12 C -0.583 4.583 13 H 0.079 0.921 14 C -0.198 4.198 15 N -0.572 5.572 16 Si 0.793 3.207 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.202 1.202 20 C -0.084 4.084 21 H 0.077 0.923 22 H 0.108 0.892 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.012 0.988 35 H 0.009 0.991 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.761 12.343 -8.809 20.477 hybrid contribution 1.473 -0.013 -0.473 1.547 sum -12.288 12.330 -9.282 19.728 Atomic orbital electron populations 1.21861 0.92524 1.02730 1.03192 1.22384 0.95942 0.92749 0.87732 1.22307 1.01186 0.96344 1.03202 1.87953 1.35781 1.69765 1.36846 1.23249 0.85255 0.92481 0.96978 0.90354 1.23134 0.97117 0.95112 1.02122 1.22917 0.96494 0.98688 0.90105 1.63566 1.10128 1.15566 1.37700 1.22211 0.85557 0.98657 0.98850 1.18889 0.94037 0.92255 0.94926 1.21656 0.93705 0.94837 1.48118 0.92075 1.25993 1.04168 0.94820 0.94782 1.70127 1.37585 1.00114 1.49374 0.85351 0.78838 0.78699 0.77843 1.18485 1.20377 1.20246 1.22830 0.97262 0.90339 0.97919 0.92293 0.89248 0.92375 0.91493 0.89794 0.92263 0.93154 0.90240 0.88770 0.93855 0.91618 0.91935 0.95515 0.98807 0.99146 0.92736 0.90358 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.56 71.98 0.69 -1.47 16 2 C 0.07 1.25 3.18 30.60 0.10 1.35 16 3 C -0.17 -2.73 9.53 71.98 0.69 -2.04 16 4 O -0.38 -9.56 9.71 -148.98 -1.45 -11.01 16 5 C 0.08 2.06 3.24 31.77 0.10 2.16 16 6 H 0.08 1.83 7.77 -2.38 -0.02 1.81 16 7 C -0.14 -3.61 6.80 31.98 0.22 -3.39 16 8 C 0.05 1.57 5.78 86.77 0.50 2.08 16 9 N -0.54 -21.01 5.16 -885.56 -4.57 -25.58 16 10 C 0.07 3.30 4.50 86.30 0.39 3.68 16 11 C 0.04 2.01 5.02 29.85 0.15 2.16 16 12 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 13 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 14 C 0.00 0.02 5.46 84.66 0.46 0.48 16 15 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 16 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 C 0.04 1.39 6.64 86.64 0.58 1.97 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 1.10 7.78 -2.39 -0.02 1.08 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.85 8.11 -2.39 -0.02 0.84 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 31 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.06 2.70 8.03 -2.38 -0.02 2.68 16 33 H 0.03 1.13 7.85 -2.39 -0.02 1.12 16 34 H -0.01 -0.38 7.49 -2.38 -0.02 -0.40 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 37 H 0.08 2.51 8.06 -2.39 -0.02 2.49 16 38 H 0.06 1.84 7.55 -2.38 -0.02 1.83 16 Total: -1.00 -66.13 307.43 1.38 -64.75 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 0.99 Total: 7.12 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 4.10 Total: -24.48 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -4.29 Total: -83.10 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.45 Total: -11.01 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -66.13 1.38 -64.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592133343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.438 kcal (2) G-P(sol) polarization free energy of solvation -66.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds