Wall clock time and date at job start Sun Mar 29 2020 21:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53005 * 109.46867 * 294.99684 * 3 2 1 6 6 C 1.53002 * 109.46776 * 174.99999 * 3 2 1 7 7 N 1.46903 * 109.47041 * 184.99509 * 6 3 2 8 8 C 1.47443 * 110.99702 * 69.87433 * 7 6 3 9 9 C 1.54323 * 107.23384 * 123.25790 * 8 7 6 10 10 C 1.55136 * 103.01766 * 22.28326 * 9 8 7 11 11 O 1.42902 * 110.98953 * 82.47515 * 10 9 8 12 12 C 1.50700 * 110.99297 * 206.25418 * 10 9 8 13 13 H 1.07999 * 120.00060 * 118.54093 * 12 10 9 14 14 C 1.37881 * 119.99919 * 298.55056 * 12 10 9 15 15 N 1.31506 * 119.99869 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99902 * 179.97438 * 14 12 10 17 17 H 1.48510 * 109.46868 * 59.99875 * 16 14 12 18 18 H 1.48495 * 109.46934 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46998 * 299.99881 * 16 14 12 20 20 C 1.47841 * 111.00434 * 190.71672 * 7 6 3 21 21 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 25 25 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 26 26 H 1.09004 * 109.46908 * 180.02562 * 5 3 2 27 27 H 1.09000 * 109.47443 * 300.00098 * 5 3 2 28 28 H 1.09001 * 109.47099 * 60.00379 * 5 3 2 29 29 H 1.08993 * 109.47416 * 304.99509 * 6 3 2 30 30 H 1.09001 * 109.46966 * 65.00241 * 6 3 2 31 31 H 1.08999 * 109.89363 * 242.66473 * 8 7 6 32 32 H 1.09002 * 109.88910 * 3.85182 * 8 7 6 33 33 H 1.08998 * 110.70577 * 140.66448 * 9 8 7 34 34 H 1.08995 * 110.70488 * 263.72388 * 9 8 7 35 35 H 0.96701 * 113.99707 * 61.45708 * 11 10 9 36 36 H 0.97003 * 120.00205 * 180.02562 * 15 14 12 37 37 H 1.09004 * 110.37001 * 332.46902 * 20 7 6 38 38 H 1.08996 * 110.37255 * 94.80549 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 7 4.0446 2.8275 0.2460 8 6 3.6653 3.4070 1.5476 9 6 4.9651 3.8715 2.2376 10 6 5.9477 4.0470 1.0499 11 8 5.7649 5.3154 0.4175 12 6 7.3753 3.8722 1.4999 13 1 7.9791 3.0789 1.0845 14 6 7.9105 4.7248 2.4420 15 7 7.1753 5.6909 2.9476 16 14 9.6799 4.5076 3.0003 17 1 10.5877 4.6469 1.8333 18 1 10.0108 5.5441 4.0109 19 1 9.8477 3.1594 3.6000 20 6 5.5156 2.8916 0.1130 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.9989 3.1541 -1.3076 27 1 2.0698 1.5874 -2.1492 28 1 0.5489 2.1252 -1.3970 29 1 3.8570 0.8801 1.0113 30 1 4.0029 0.9835 -0.7597 31 1 3.0017 4.2582 1.3954 32 1 3.1700 2.6527 2.1592 33 1 4.8104 4.8194 2.7530 34 1 5.3261 3.1119 2.9309 35 1 5.9307 6.0714 0.9972 36 1 7.5520 6.2910 3.6102 37 1 5.9670 1.9531 0.4349 38 1 5.7942 3.1139 -0.9171 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:22 Heat of formation + Delta-G solvation = -67.662851 kcal Electronic energy + Delta-G solvation = -16651.723939 eV Core-core repulsion = 14107.220651 eV Total energy + Delta-G solvation = -2544.503288 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.62670 -36.40696 -34.10509 -32.10411 -30.45559 -28.58648 -28.00006 -25.95554 -24.37458 -22.69433 -20.45985 -19.53450 -19.00293 -16.99002 -15.34956 -15.15020 -14.85139 -14.61294 -14.34617 -13.80628 -13.19437 -12.90043 -12.58816 -12.30043 -11.90848 -11.81200 -11.63380 -11.45969 -11.22385 -11.09141 -11.00615 -10.76948 -10.44280 -10.41781 -10.33689 -10.26381 -10.08003 -9.78352 -9.13051 -8.56687 -8.04132 -7.50065 -6.18417 -4.26647 3.24742 3.29609 3.32568 4.30882 4.63687 5.00603 5.06575 5.12181 5.21983 5.43966 5.65572 5.70138 5.80283 5.82573 5.89954 5.97589 6.00730 6.10811 6.15381 6.18473 6.20865 6.28705 6.36528 6.52045 6.61933 6.70604 6.75170 6.92682 7.13207 7.46322 7.52996 7.71884 7.83835 7.90182 8.21241 8.75438 9.41919 9.55777 10.88445 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053465 B = 0.006014 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.585627 B = 4654.673026 C = 4755.064944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.087 4.087 4 H 0.068 0.932 5 C -0.136 4.136 6 C 0.055 3.945 7 N -0.525 5.525 8 C 0.044 3.956 9 C -0.144 4.144 10 C 0.252 3.748 11 O -0.579 6.579 12 C -0.537 4.537 13 H 0.059 0.941 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.059 3.941 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.376 0.624 36 H 0.266 0.734 37 H 0.044 0.956 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.234 -7.538 -3.026 12.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.106 4.106 4 H 0.086 0.914 5 C -0.194 4.194 6 C -0.074 4.074 7 N -0.249 5.249 8 C -0.084 4.084 9 C -0.184 4.184 10 C 0.212 3.788 11 O -0.386 6.386 12 C -0.575 4.575 13 H 0.078 0.922 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.068 4.068 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.225 0.775 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.614 -7.492 -3.816 12.772 hybrid contribution 1.497 -0.285 1.635 2.235 sum -8.118 -7.777 -2.181 11.451 Atomic orbital electron populations 1.21797 0.96118 1.01022 1.01889 1.21566 0.95684 0.96933 1.01618 1.21154 0.95201 0.95105 0.99103 0.91397 1.21731 0.99484 1.01961 0.96183 1.22289 0.94695 0.90529 0.99867 1.63555 1.12954 1.16408 1.31953 1.22835 0.98676 0.97963 0.88882 1.23249 0.94151 1.01375 0.99579 1.19516 0.91816 0.81194 0.86311 1.86145 1.92636 1.16576 1.43281 1.21529 0.97511 1.15382 1.23122 0.92235 1.24992 0.98082 0.94707 0.95251 1.69730 1.36461 1.17648 1.29594 0.86549 0.84552 0.77836 0.78426 1.20044 1.21145 1.20221 1.22973 0.85420 0.97876 1.00560 0.93256 0.92935 0.92479 0.92190 0.92411 0.91240 0.93512 0.93745 0.95470 0.91672 0.91930 0.94662 0.90556 0.92802 0.77511 0.92364 0.93753 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.67 37.16 0.36 -1.15 16 2 C -0.12 -1.37 5.40 -26.73 -0.14 -1.52 16 3 C -0.09 -1.20 2.36 -90.62 -0.21 -1.41 16 4 H 0.07 0.99 7.05 -51.93 -0.37 0.63 16 5 C -0.14 -1.84 8.84 37.16 0.33 -1.51 16 6 C 0.05 0.90 3.93 -3.82 -0.02 0.88 16 7 N -0.52 -10.39 4.61 -231.25 -1.07 -11.46 16 8 C 0.04 0.89 6.13 -2.83 -0.02 0.87 16 9 C -0.14 -3.40 5.37 -24.91 -0.13 -3.54 16 10 C 0.25 6.38 0.87 -89.64 -0.08 6.31 16 11 O -0.58 -15.45 13.16 -35.23 -0.46 -15.91 16 12 C -0.54 -14.62 8.27 -34.44 -0.28 -14.90 16 13 H 0.06 1.61 7.79 -52.49 -0.41 1.20 16 14 C 0.07 1.93 5.29 -17.82 -0.09 1.83 16 15 N -0.90 -24.15 10.75 55.43 0.60 -23.56 16 16 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 C 0.06 1.32 5.86 -2.30 -0.01 1.30 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.08 7.75 -51.93 -0.40 0.68 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.52 6.57 -51.93 -0.34 0.18 16 29 H 0.03 0.45 7.96 -51.93 -0.41 0.04 16 30 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.03 0.65 6.94 -51.93 -0.36 0.29 16 33 H 0.08 1.90 7.54 -51.93 -0.39 1.51 16 34 H 0.05 1.30 8.04 -51.93 -0.42 0.88 16 35 H 0.38 10.06 7.56 45.56 0.34 10.40 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.04 0.97 7.70 -51.93 -0.40 0.57 16 38 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 296.18 15.07 4.46 4.46 Total: -1.00 -27.24 296.18 -7.81 -35.05 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.01 Total: 8.43 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -0.31 Total: -12.82 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.47 Total: -35.01 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.46 Total: -15.91 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.24 -7.81 -35.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.609 kcal (2) G-P(sol) polarization free energy of solvation -27.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds