Wall clock time and date at job start Sun Mar 29 2020 21:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53005 * 109.46867 * 294.99684 * 3 2 1 6 6 C 1.53002 * 109.46776 * 174.99999 * 3 2 1 7 7 N 1.46903 * 109.47041 * 184.99509 * 6 3 2 8 8 C 1.47443 * 110.99702 * 69.87433 * 7 6 3 9 9 C 1.54323 * 107.23384 * 123.25790 * 8 7 6 10 10 C 1.55136 * 103.01766 * 22.28326 * 9 8 7 11 11 O 1.42902 * 110.98953 * 82.47515 * 10 9 8 12 12 C 1.50700 * 110.99297 * 206.25418 * 10 9 8 13 13 H 1.07999 * 120.00060 * 118.54093 * 12 10 9 14 14 C 1.37881 * 119.99919 * 298.55056 * 12 10 9 15 15 N 1.31506 * 119.99869 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99902 * 179.97438 * 14 12 10 17 17 H 1.48510 * 109.46868 * 59.99875 * 16 14 12 18 18 H 1.48495 * 109.46934 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46998 * 299.99881 * 16 14 12 20 20 C 1.47841 * 111.00434 * 190.71672 * 7 6 3 21 21 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 25 25 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 26 26 H 1.09004 * 109.46908 * 180.02562 * 5 3 2 27 27 H 1.09000 * 109.47443 * 300.00098 * 5 3 2 28 28 H 1.09001 * 109.47099 * 60.00379 * 5 3 2 29 29 H 1.08993 * 109.47416 * 304.99509 * 6 3 2 30 30 H 1.09001 * 109.46966 * 65.00241 * 6 3 2 31 31 H 1.08999 * 109.89363 * 242.66473 * 8 7 6 32 32 H 1.09002 * 109.88910 * 3.85182 * 8 7 6 33 33 H 1.08998 * 110.70577 * 140.66448 * 9 8 7 34 34 H 1.08995 * 110.70488 * 263.72388 * 9 8 7 35 35 H 0.96701 * 113.99707 * 61.45708 * 11 10 9 36 36 H 0.97003 * 120.00205 * 180.02562 * 15 14 12 37 37 H 1.09004 * 110.37001 * 332.46902 * 20 7 6 38 38 H 1.08996 * 110.37255 * 94.80549 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 7 4.0446 2.8275 0.2460 8 6 3.6653 3.4070 1.5476 9 6 4.9651 3.8715 2.2376 10 6 5.9477 4.0470 1.0499 11 8 5.7649 5.3154 0.4175 12 6 7.3753 3.8722 1.4999 13 1 7.9791 3.0789 1.0845 14 6 7.9105 4.7248 2.4420 15 7 7.1753 5.6909 2.9476 16 14 9.6799 4.5076 3.0003 17 1 10.5877 4.6469 1.8333 18 1 10.0108 5.5441 4.0109 19 1 9.8477 3.1594 3.6000 20 6 5.5156 2.8916 0.1130 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.9989 3.1541 -1.3076 27 1 2.0698 1.5874 -2.1492 28 1 0.5489 2.1252 -1.3970 29 1 3.8570 0.8801 1.0113 30 1 4.0029 0.9835 -0.7597 31 1 3.0017 4.2582 1.3954 32 1 3.1700 2.6527 2.1592 33 1 4.8104 4.8194 2.7530 34 1 5.3261 3.1119 2.9309 35 1 5.9307 6.0714 0.9972 36 1 7.5520 6.2910 3.6102 37 1 5.9670 1.9531 0.4349 38 1 5.7942 3.1139 -0.9171 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:21 Heat of formation + Delta-G solvation = -85.604281 kcal Electronic energy + Delta-G solvation = -16652.501938 eV Core-core repulsion = 14107.220651 eV Total energy + Delta-G solvation = -2545.281287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27913 -37.81258 -35.76199 -34.18767 -31.84812 -30.03970 -29.73907 -27.40141 -26.06179 -23.95448 -21.92929 -21.35841 -20.34524 -19.01089 -17.01455 -16.86750 -16.58182 -15.95856 -15.66921 -15.50278 -14.49849 -14.31185 -14.11267 -13.87884 -13.60324 -13.18172 -13.02638 -12.92842 -12.79909 -12.67859 -12.58484 -12.29176 -12.22102 -12.14041 -11.64102 -11.43253 -11.40090 -11.34711 -11.02595 -10.59404 -10.07963 -9.10625 -8.21996 -6.38357 1.40489 1.41862 1.49496 2.37496 3.01971 3.17199 3.84525 3.98864 4.03673 4.13970 4.24462 4.28884 4.43553 4.49604 4.63938 4.72113 4.77093 4.83525 4.87223 4.93722 4.96343 5.07957 5.17352 5.21434 5.25526 5.31300 5.36290 5.48056 5.53906 5.56979 5.65240 5.79533 5.98953 6.24490 6.35579 6.67281 7.33315 7.45094 8.83116 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053465 B = 0.006014 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.585627 B = 4654.673026 C = 4755.064944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.082 4.082 4 H 0.060 0.940 5 C -0.132 4.132 6 C 0.053 3.947 7 N -0.527 5.527 8 C 0.055 3.945 9 C -0.136 4.136 10 C 0.234 3.766 11 O -0.588 6.588 12 C -0.565 4.565 13 H 0.053 0.947 14 C 0.032 3.968 15 N -0.911 5.911 16 Si 0.960 3.040 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.272 1.272 20 C 0.066 3.934 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.371 0.629 36 H 0.269 0.731 37 H 0.047 0.953 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 -8.806 -3.094 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.100 4.100 4 H 0.079 0.921 5 C -0.189 4.189 6 C -0.075 4.075 7 N -0.251 5.251 8 C -0.073 4.073 9 C -0.175 4.175 10 C 0.194 3.806 11 O -0.395 6.395 12 C -0.603 4.603 13 H 0.072 0.928 14 C -0.169 4.169 15 N -0.550 5.550 16 Si 0.785 3.215 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.197 1.197 20 C -0.061 4.061 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.219 0.781 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.283 -8.771 -3.890 14.065 hybrid contribution 1.691 0.115 1.641 2.360 sum -8.592 -8.657 -2.248 12.402 Atomic orbital electron populations 1.21780 0.94814 1.02023 1.02003 1.21526 0.96762 0.95007 1.02064 1.21120 0.93085 0.96867 0.98973 0.92116 1.21682 1.00711 1.00350 0.96197 1.22429 0.96574 0.88347 1.00153 1.63533 1.11130 1.18891 1.31568 1.22719 0.96908 0.98626 0.89041 1.23057 0.95556 1.00065 0.98831 1.19773 0.91750 0.81288 0.87754 1.86136 1.92670 1.17073 1.43615 1.21809 0.98739 1.15839 1.23961 0.92835 1.25692 1.01740 0.94364 0.95140 1.69819 1.37758 1.17842 1.29556 0.85596 0.79966 0.77986 0.77964 1.19954 1.20478 1.19690 1.22817 0.87170 0.96782 0.99370 0.91865 0.93064 0.92142 0.91483 0.92289 0.93755 0.92987 0.91868 0.95484 0.90974 0.91938 0.92492 0.92498 0.93961 0.78076 0.92189 0.93448 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.67 71.98 0.70 -1.83 16 2 C -0.12 -2.32 5.40 30.59 0.17 -2.16 16 3 C -0.08 -2.07 2.36 -10.79 -0.03 -2.10 16 4 H 0.06 1.64 7.05 -2.39 -0.02 1.63 16 5 C -0.13 -3.30 8.84 71.98 0.64 -2.66 16 6 C 0.05 1.64 3.93 86.30 0.34 1.98 16 7 N -0.53 -20.45 4.61 -885.54 -4.08 -24.53 16 8 C 0.05 2.17 6.13 86.65 0.53 2.70 16 9 C -0.14 -6.46 5.37 31.77 0.17 -6.29 16 10 C 0.23 12.01 0.87 -10.16 -0.01 12.00 16 11 O -0.59 -31.93 13.16 -148.98 -1.96 -33.89 16 12 C -0.57 -31.08 8.27 25.60 0.21 -30.87 16 13 H 0.05 2.92 7.79 -2.91 -0.02 2.90 16 14 C 0.03 1.69 5.29 84.66 0.45 2.14 16 15 N -0.91 -49.48 10.75 21.45 0.23 -49.25 16 16 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 C 0.07 2.96 5.86 86.77 0.51 3.47 16 21 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.06 0.98 6.56 -2.39 -0.02 0.97 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.33 7.75 -2.38 -0.02 1.31 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.33 6.57 -2.39 -0.02 1.31 16 29 H 0.03 0.85 7.96 -2.39 -0.02 0.83 16 30 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.06 2.00 6.94 -2.39 -0.02 1.98 16 33 H 0.06 2.88 7.54 -2.39 -0.02 2.87 16 34 H 0.04 2.05 8.04 -2.39 -0.02 2.04 16 35 H 0.37 20.38 7.56 -74.06 -0.56 19.82 16 36 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 37 H 0.05 2.06 7.70 -2.38 -0.02 2.04 16 38 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -57.22 296.18 0.34 -56.89 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.45 Total: 29.83 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 3.67 Total: -23.61 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -3.85 Total: -73.78 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.96 Total: -33.89 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -57.22 0.34 -56.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.719 kcal (2) G-P(sol) polarization free energy of solvation -57.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds