Wall clock time and date at job start Sun Mar 29 2020 21:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47169 * 2 1 4 4 H 1.08995 * 109.47218 * 54.99995 * 3 2 1 5 5 C 1.53004 * 109.47256 * 295.00503 * 3 2 1 6 6 C 1.53002 * 109.47300 * 175.00513 * 3 2 1 7 7 N 1.46893 * 109.47044 * 183.96994 * 6 3 2 8 8 C 1.47899 * 111.00119 * 175.70579 * 7 6 3 9 9 C 1.53991 * 107.06318 * 214.15511 * 8 7 6 10 10 C 1.54598 * 105.13932 * 1.22092 * 9 8 7 11 11 O 1.42895 * 110.72637 * 263.42389 * 10 9 8 12 12 C 1.50702 * 110.72577 * 140.31125 * 10 9 8 13 13 H 1.07991 * 120.00437 * 241.45794 * 12 10 9 14 14 C 1.37876 * 119.99514 * 61.45922 * 12 10 9 15 15 N 1.31515 * 120.00224 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00129 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47033 * 59.99825 * 16 14 12 18 18 H 1.48497 * 109.47318 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46879 * 300.00345 * 16 14 12 20 20 C 1.48534 * 111.00385 * 58.30923 * 7 6 3 21 21 H 1.08998 * 109.46976 * 299.99571 * 1 2 3 22 22 H 1.08996 * 109.47438 * 59.99597 * 1 2 3 23 23 H 1.09001 * 109.46704 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46429 * 240.00106 * 2 1 3 25 25 H 1.08996 * 109.47438 * 120.00403 * 2 1 3 26 26 H 1.09007 * 109.46880 * 305.24357 * 5 3 2 27 27 H 1.09004 * 109.47185 * 65.24077 * 5 3 2 28 28 H 1.09005 * 109.47273 * 185.24547 * 5 3 2 29 29 H 1.09004 * 109.46880 * 303.96974 * 6 3 2 30 30 H 1.08999 * 109.46760 * 63.96698 * 6 3 2 31 31 H 1.09000 * 109.91581 * 333.51079 * 8 7 6 32 32 H 1.09007 * 109.92062 * 94.80166 * 8 7 6 33 33 H 1.09003 * 110.31395 * 120.13459 * 9 8 7 34 34 H 1.09001 * 110.31090 * 242.21137 * 9 8 7 35 35 H 0.96695 * 113.99880 * 298.54042 * 11 10 9 36 36 H 0.96996 * 120.00523 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.66740 * 278.15560 * 20 7 6 38 38 H 1.08994 * 110.66629 * 41.28317 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1256 7 7 4.0466 2.8287 0.2212 8 6 5.5078 2.8671 0.4469 9 6 5.7943 4.0839 1.3461 10 6 4.4092 4.7060 1.6371 11 8 4.1415 5.7859 0.7404 12 6 4.3229 5.1698 3.0683 13 1 3.5888 4.7383 3.7325 14 6 5.1812 6.1452 3.5298 15 7 6.0756 6.6703 2.7211 16 14 5.0739 6.7207 5.3037 17 1 5.3151 5.5713 6.2125 18 1 6.0987 7.7674 5.5474 19 1 3.7228 7.2805 5.5615 20 6 3.4389 3.5248 1.3842 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.9911 1.5362 -2.1517 27 1 0.5492 2.2086 -1.3533 28 1 2.0769 3.1223 -1.3483 29 1 3.8563 0.8955 1.0212 30 1 4.0022 0.9671 -0.7514 31 1 5.8307 1.9530 0.9450 32 1 6.0278 2.9781 -0.5048 33 1 6.2683 3.7650 2.2745 34 1 6.4297 4.7991 0.8238 35 1 4.7696 6.5179 0.8077 36 1 6.6797 7.3562 3.0458 37 1 2.4430 3.8915 1.1356 38 1 3.4018 2.8650 2.2509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:23 Heat of formation + Delta-G solvation = -67.015096 kcal Electronic energy + Delta-G solvation = -16752.414864 eV Core-core repulsion = 14207.939664 eV Total energy + Delta-G solvation = -2544.475199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.63114 -36.35255 -34.13874 -32.07248 -30.55330 -28.48736 -27.91090 -25.91007 -24.52430 -22.53459 -20.26077 -19.89339 -18.86411 -16.94129 -15.42618 -15.21713 -14.80706 -14.46868 -14.04534 -13.88363 -13.36531 -13.00856 -12.38572 -12.30112 -12.01435 -11.83896 -11.57581 -11.45714 -11.25715 -11.08043 -10.87706 -10.64792 -10.54132 -10.45651 -10.37563 -10.09897 -10.03214 -9.70090 -9.08340 -8.54814 -8.04541 -7.61056 -6.17035 -4.25241 3.25384 3.30325 3.33235 4.32094 4.64495 5.03414 5.10483 5.11030 5.23942 5.47960 5.67897 5.72005 5.80880 5.85856 5.89890 5.98989 6.04840 6.08180 6.15028 6.19167 6.23578 6.29757 6.38220 6.53082 6.64495 6.67578 6.79373 6.96869 7.11096 7.46414 7.56044 7.63452 7.82188 7.87754 8.24364 8.77065 9.43523 9.60877 10.89908 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037785 B = 0.006825 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.848972 B = 4101.635941 C = 4384.858758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.091 4.091 4 H 0.072 0.928 5 C -0.138 4.138 6 C 0.052 3.948 7 N -0.512 5.512 8 C 0.036 3.964 9 C -0.128 4.128 10 C 0.255 3.745 11 O -0.580 6.580 12 C -0.538 4.538 13 H 0.059 0.941 14 C 0.071 3.929 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.055 3.945 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.376 0.624 36 H 0.267 0.733 37 H 0.071 0.929 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.868 -9.618 -4.333 11.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.090 0.910 5 C -0.195 4.195 6 C -0.077 4.077 7 N -0.235 5.235 8 C -0.092 4.092 9 C -0.167 4.167 10 C 0.215 3.785 11 O -0.387 6.387 12 C -0.576 4.576 13 H 0.077 0.923 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.072 4.072 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.225 0.775 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.350 -9.632 -5.015 12.106 hybrid contribution 0.827 0.167 1.971 2.144 sum -4.523 -9.465 -3.044 10.923 Atomic orbital electron populations 1.21792 0.96054 1.00992 1.02019 1.21561 0.95786 0.96812 1.01482 1.21196 0.94969 0.95352 0.99460 0.90987 1.21751 0.99859 1.02000 0.95926 1.22300 0.94933 0.90826 0.99660 1.64755 1.04889 1.12646 1.41258 1.22902 0.88822 0.98335 0.99155 1.22919 1.01098 0.95190 0.97520 1.19341 0.88027 0.83638 0.87496 1.86135 1.57812 1.31596 1.63201 1.21585 1.18119 1.21925 0.95993 0.92289 1.24993 0.94444 0.95683 0.97986 1.69726 1.20232 1.27760 1.35683 0.86563 0.77923 0.78407 0.84550 1.20248 1.21150 1.20071 1.23148 0.99098 0.95084 0.89888 0.92808 0.92482 0.93282 0.92281 0.92448 0.93618 0.93669 0.90856 0.95634 0.91714 0.95516 0.91998 0.92239 0.91577 0.77479 0.92358 0.91038 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 37.16 0.36 -1.24 16 2 C -0.12 -1.40 5.40 -26.73 -0.14 -1.54 16 3 C -0.09 -1.32 2.19 -90.62 -0.20 -1.52 16 4 H 0.07 1.14 6.69 -51.93 -0.35 0.80 16 5 C -0.14 -1.97 8.76 37.16 0.33 -1.64 16 6 C 0.05 0.84 4.24 -3.83 -0.02 0.82 16 7 N -0.51 -10.17 4.67 -230.45 -1.08 -11.24 16 8 C 0.04 0.72 6.70 -2.76 -0.02 0.70 16 9 C -0.13 -3.04 5.26 -25.37 -0.13 -3.17 16 10 C 0.26 6.48 0.95 -89.91 -0.09 6.39 16 11 O -0.58 -15.54 13.10 -35.23 -0.46 -16.00 16 12 C -0.54 -14.61 8.14 -34.44 -0.28 -14.89 16 13 H 0.06 1.59 7.78 -52.49 -0.41 1.18 16 14 C 0.07 1.91 5.28 -17.82 -0.09 1.81 16 15 N -0.89 -24.18 11.00 55.43 0.61 -23.57 16 16 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.06 1.22 4.48 -1.89 -0.01 1.21 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.59 6.68 -51.93 -0.35 0.24 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 27 H 0.04 0.58 6.83 -51.93 -0.35 0.22 16 28 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16 29 H 0.03 0.42 7.97 -51.93 -0.41 0.00 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.50 7.67 -51.93 -0.40 0.10 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.47 7.84 -51.93 -0.41 1.06 16 34 H 0.07 1.64 7.99 -51.93 -0.41 1.22 16 35 H 0.38 10.14 7.46 45.56 0.34 10.48 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.07 1.60 7.56 -51.93 -0.39 1.21 16 38 H 0.04 0.92 7.92 -51.93 -0.41 0.50 16 LS Contribution 295.96 15.07 4.46 4.46 Total: -1.00 -27.29 295.96 -7.83 -35.12 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.04 Total: 8.51 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.29 Total: -13.07 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.47 Total: -34.82 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.46 Total: -16.00 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.29 -7.83 -35.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.895 kcal (2) G-P(sol) polarization free energy of solvation -27.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds