Wall clock time and date at job start Sun Mar 29 2020 21:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47169 * 2 1 4 4 H 1.08995 * 109.47218 * 54.99995 * 3 2 1 5 5 C 1.53004 * 109.47256 * 295.00503 * 3 2 1 6 6 C 1.53002 * 109.47300 * 175.00513 * 3 2 1 7 7 N 1.46893 * 109.47044 * 183.96994 * 6 3 2 8 8 C 1.47899 * 111.00119 * 175.70579 * 7 6 3 9 9 C 1.53991 * 107.06318 * 214.15511 * 8 7 6 10 10 C 1.54598 * 105.13932 * 1.22092 * 9 8 7 11 11 O 1.42895 * 110.72637 * 263.42389 * 10 9 8 12 12 C 1.50702 * 110.72577 * 140.31125 * 10 9 8 13 13 H 1.07991 * 120.00437 * 241.45794 * 12 10 9 14 14 C 1.37876 * 119.99514 * 61.45922 * 12 10 9 15 15 N 1.31515 * 120.00224 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00129 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47033 * 59.99825 * 16 14 12 18 18 H 1.48497 * 109.47318 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46879 * 300.00345 * 16 14 12 20 20 C 1.48534 * 111.00385 * 58.30923 * 7 6 3 21 21 H 1.08998 * 109.46976 * 299.99571 * 1 2 3 22 22 H 1.08996 * 109.47438 * 59.99597 * 1 2 3 23 23 H 1.09001 * 109.46704 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46429 * 240.00106 * 2 1 3 25 25 H 1.08996 * 109.47438 * 120.00403 * 2 1 3 26 26 H 1.09007 * 109.46880 * 305.24357 * 5 3 2 27 27 H 1.09004 * 109.47185 * 65.24077 * 5 3 2 28 28 H 1.09005 * 109.47273 * 185.24547 * 5 3 2 29 29 H 1.09004 * 109.46880 * 303.96974 * 6 3 2 30 30 H 1.08999 * 109.46760 * 63.96698 * 6 3 2 31 31 H 1.09000 * 109.91581 * 333.51079 * 8 7 6 32 32 H 1.09007 * 109.92062 * 94.80166 * 8 7 6 33 33 H 1.09003 * 110.31395 * 120.13459 * 9 8 7 34 34 H 1.09001 * 110.31090 * 242.21137 * 9 8 7 35 35 H 0.96695 * 113.99880 * 298.54042 * 11 10 9 36 36 H 0.96996 * 120.00523 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.66740 * 278.15560 * 20 7 6 38 38 H 1.08994 * 110.66629 * 41.28317 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1256 7 7 4.0466 2.8287 0.2212 8 6 5.5078 2.8671 0.4469 9 6 5.7943 4.0839 1.3461 10 6 4.4092 4.7060 1.6371 11 8 4.1415 5.7859 0.7404 12 6 4.3229 5.1698 3.0683 13 1 3.5888 4.7383 3.7325 14 6 5.1812 6.1452 3.5298 15 7 6.0756 6.6703 2.7211 16 14 5.0739 6.7207 5.3037 17 1 5.3151 5.5713 6.2125 18 1 6.0987 7.7674 5.5474 19 1 3.7228 7.2805 5.5615 20 6 3.4389 3.5248 1.3842 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.9911 1.5362 -2.1517 27 1 0.5492 2.2086 -1.3533 28 1 2.0769 3.1223 -1.3483 29 1 3.8563 0.8955 1.0212 30 1 4.0022 0.9671 -0.7514 31 1 5.8307 1.9530 0.9450 32 1 6.0278 2.9781 -0.5048 33 1 6.2683 3.7650 2.2745 34 1 6.4297 4.7991 0.8238 35 1 4.7696 6.5179 0.8077 36 1 6.6797 7.3562 3.0458 37 1 2.4430 3.8915 1.1356 38 1 3.4018 2.8650 2.2509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:23 Heat of formation + Delta-G solvation = -85.140570 kcal Electronic energy + Delta-G solvation = -16753.200843 eV Core-core repulsion = 14207.939664 eV Total energy + Delta-G solvation = -2545.261179 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27393 -37.79489 -35.80833 -34.16193 -31.95698 -30.02933 -29.56386 -27.43283 -26.17709 -23.80112 -21.76336 -21.64753 -20.30296 -18.96960 -17.14401 -16.90274 -16.38856 -15.85889 -15.71151 -15.27601 -14.93221 -14.38497 -13.99884 -13.82609 -13.51651 -13.31409 -13.16230 -12.81502 -12.75101 -12.65588 -12.50564 -12.37372 -12.25475 -12.05917 -11.71511 -11.40350 -11.34718 -11.24010 -11.03241 -10.58753 -10.08800 -9.19633 -8.21068 -6.37272 1.40629 1.41869 1.49579 2.38057 3.03031 3.19548 3.83492 3.96697 4.03652 4.14336 4.22133 4.33481 4.43975 4.47848 4.63684 4.70361 4.77210 4.80506 4.86751 4.92856 4.94165 5.10688 5.16901 5.19918 5.23913 5.27021 5.35727 5.49281 5.55677 5.57650 5.63435 5.77773 5.94754 6.22179 6.35094 6.68586 7.34584 7.49032 8.84229 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037785 B = 0.006825 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.848972 B = 4101.635941 C = 4384.858758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.089 4.089 4 H 0.053 0.947 5 C -0.133 4.133 6 C 0.050 3.950 7 N -0.518 5.518 8 C 0.042 3.958 9 C -0.120 4.120 10 C 0.236 3.764 11 O -0.589 6.589 12 C -0.565 4.565 13 H 0.053 0.947 14 C 0.030 3.970 15 N -0.911 5.911 16 Si 0.959 3.041 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.275 1.275 20 C 0.069 3.931 21 H 0.046 0.954 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.029 0.971 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.371 0.629 36 H 0.269 0.731 37 H 0.063 0.937 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.312 -11.093 -4.407 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.108 4.108 4 H 0.071 0.929 5 C -0.190 4.190 6 C -0.078 4.078 7 N -0.241 5.241 8 C -0.086 4.086 9 C -0.159 4.159 10 C 0.196 3.804 11 O -0.396 6.396 12 C -0.603 4.603 13 H 0.071 0.929 14 C -0.170 4.170 15 N -0.550 5.550 16 Si 0.784 3.216 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.200 1.200 20 C -0.059 4.059 21 H 0.065 0.935 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.219 0.781 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.799 -11.123 -5.098 13.540 hybrid contribution 0.964 0.630 1.967 2.279 sum -4.835 -10.493 -3.131 11.970 Atomic orbital electron populations 1.21786 0.95108 1.02051 1.01820 1.21512 0.96571 0.94691 1.02262 1.21182 0.93669 0.97162 0.98778 0.92897 1.21684 1.00554 1.00369 0.96380 1.22433 0.96211 0.88596 1.00524 1.64737 1.04480 1.15082 1.39851 1.22839 0.89317 0.97307 0.99136 1.22710 0.99695 0.96219 0.97239 1.19631 0.89931 0.84097 0.86726 1.86128 1.57872 1.31950 1.63678 1.21856 1.18514 1.22866 0.97057 0.92919 1.25693 0.94013 0.95621 1.01708 1.69815 1.20367 1.27757 1.37068 0.85610 0.77871 0.78054 0.80063 1.19699 1.20476 1.19987 1.22905 0.98021 0.94176 0.90782 0.93487 0.92254 0.91613 0.90958 0.92191 0.92180 0.92396 0.93978 0.95324 0.89933 0.93659 0.90714 0.93918 0.93429 0.78115 0.92195 0.91866 0.94026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.67 71.98 0.70 -2.10 16 2 C -0.11 -2.35 5.40 30.59 0.17 -2.18 16 3 C -0.09 -2.43 2.19 -10.79 -0.02 -2.45 16 4 H 0.05 1.64 6.69 -2.39 -0.02 1.63 16 5 C -0.13 -3.57 8.76 71.98 0.63 -2.94 16 6 C 0.05 1.53 4.24 86.31 0.37 1.90 16 7 N -0.52 -20.07 4.67 -883.02 -4.13 -24.20 16 8 C 0.04 1.64 6.70 86.45 0.58 2.22 16 9 C -0.12 -5.72 5.26 31.47 0.17 -5.56 16 10 C 0.24 12.15 0.95 -10.33 -0.01 12.15 16 11 O -0.59 -32.28 13.10 -148.98 -1.95 -34.23 16 12 C -0.56 -31.11 8.14 25.60 0.21 -30.90 16 13 H 0.05 2.88 7.78 -2.92 -0.02 2.86 16 14 C 0.03 1.63 5.28 84.65 0.45 2.08 16 15 N -0.91 -49.72 11.00 21.45 0.24 -49.49 16 16 Si 0.96 42.68 29.54 68.60 2.03 44.70 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C 0.07 3.06 4.48 86.65 0.39 3.45 16 21 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.06 1.07 6.68 -2.39 -0.02 1.06 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.06 1.39 6.83 -2.39 -0.02 1.37 16 28 H 0.04 1.39 7.58 -2.38 -0.02 1.37 16 29 H 0.03 0.87 7.97 -2.39 -0.02 0.85 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.05 1.61 7.67 -2.39 -0.02 1.59 16 32 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 33 H 0.04 2.13 7.84 -2.39 -0.02 2.11 16 34 H 0.05 2.40 7.99 -2.39 -0.02 2.38 16 35 H 0.37 20.59 7.46 -74.06 -0.55 20.04 16 36 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 37 H 0.06 2.88 7.56 -2.39 -0.02 2.86 16 38 H 0.04 1.82 7.92 -2.39 -0.02 1.81 16 Total: -1.00 -57.77 295.96 0.26 -57.51 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.46 Total: 30.04 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 3.61 Total: -24.34 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -3.89 Total: -73.69 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -1.95 Total: -34.23 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -57.77 0.26 -57.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.630 kcal (2) G-P(sol) polarization free energy of solvation -57.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds