Wall clock time and date at job start Sun Mar 29 2020 21:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47227 * 2 1 4 4 C 1.53000 * 109.46867 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47355 * 55.00236 * 4 3 2 6 6 C 1.53008 * 109.46868 * 174.99804 * 4 3 2 7 7 N 1.46901 * 109.47606 * 294.99470 * 4 3 2 8 8 C 1.48532 * 111.00346 * 289.07969 * 7 4 3 9 9 C 1.54931 * 103.22553 * 200.27321 * 8 7 4 10 10 C 1.54595 * 102.92350 * 37.41559 * 9 8 7 11 11 O 1.42902 * 110.30939 * 219.12589 * 10 9 8 12 12 C 1.50699 * 110.31191 * 96.95680 * 10 9 8 13 13 H 1.08006 * 120.00027 * 244.28819 * 12 10 9 14 14 C 1.37871 * 120.00246 * 64.28052 * 12 10 9 15 15 N 1.31513 * 120.00494 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 119.99655 * 0.02562 * 14 12 10 17 17 H 1.48501 * 109.47415 * 89.99848 * 16 14 12 18 18 H 1.48503 * 109.46705 * 209.99277 * 16 14 12 19 19 H 1.48496 * 109.47082 * 329.99423 * 16 14 12 20 20 C 1.47899 * 111.00352 * 171.67586 * 7 4 3 21 21 H 1.08995 * 109.47126 * 59.99701 * 1 2 3 22 22 H 1.08996 * 109.46845 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47052 * 300.00027 * 1 2 3 24 24 H 1.08994 * 109.47269 * 239.99811 * 2 1 3 25 25 H 1.09002 * 109.47049 * 119.99920 * 2 1 3 26 26 H 1.09003 * 109.47127 * 60.00019 * 3 2 1 27 27 H 1.09002 * 109.47041 * 299.99925 * 3 2 1 28 28 H 1.08999 * 109.46802 * 52.46129 * 6 4 3 29 29 H 1.09001 * 109.46730 * 172.45622 * 6 4 3 30 30 H 1.08993 * 109.47172 * 292.46103 * 6 4 3 31 31 H 1.08994 * 110.66413 * 318.71351 * 8 7 4 32 32 H 1.08998 * 110.66700 * 81.67150 * 8 7 4 33 33 H 1.09004 * 110.72701 * 279.05451 * 9 8 7 34 34 H 1.09005 * 110.72429 * 155.77125 * 9 8 7 35 35 H 0.96702 * 113.99495 * 295.71512 * 11 10 9 36 36 H 0.97001 * 120.00258 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.90999 * 26.49575 * 20 7 4 38 38 H 1.08997 * 110.08248 * 265.29474 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0802 2.8795 -0.1251 7 7 4.0593 0.8574 1.2562 8 6 3.8090 1.7694 2.4015 9 6 4.8112 1.2743 3.4744 10 6 6.0555 0.8979 2.6377 11 8 6.6563 -0.2929 3.1505 12 6 7.0501 2.0301 2.6409 13 1 7.2907 2.5402 1.7198 14 6 7.6527 2.4149 3.8197 15 7 8.5203 3.4033 3.8227 16 14 7.2369 1.5324 5.4127 17 1 8.1644 0.3882 5.6015 18 1 7.3758 2.4752 6.5517 19 1 5.8400 1.0324 5.3515 20 6 5.5240 0.6574 1.2125 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.6106 3.4998 0.6383 29 1 5.1617 2.8941 0.0095 30 1 3.8315 3.2681 -1.1126 31 1 4.0209 2.8020 2.1244 32 1 2.7828 1.6702 2.7552 33 1 4.4183 0.4013 3.9956 34 1 5.0471 2.0718 4.1791 35 1 7.0093 -0.2010 4.0461 36 1 8.9446 3.6738 4.6520 37 1 5.9756 1.3703 0.5225 38 1 5.7536 -0.3605 0.8974 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:34 Heat of formation + Delta-G solvation = -42.213134 kcal Electronic energy + Delta-G solvation = -17055.886612 eV Core-core repulsion = 14512.486906 eV Total energy + Delta-G solvation = -2543.399706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.19436 -36.38544 -34.07179 -32.38465 -31.47308 -28.50726 -27.88807 -26.51056 -24.42069 -22.26815 -21.28100 -19.65016 -19.02932 -17.14743 -15.95500 -15.74896 -14.77175 -14.57885 -14.08670 -13.57207 -13.49351 -13.27479 -12.72139 -12.61674 -12.23824 -12.16221 -11.85065 -11.66638 -11.27869 -11.21241 -10.99737 -10.70753 -10.56215 -10.39534 -10.32354 -10.17394 -10.00837 -9.70809 -9.17989 -8.78027 -8.45542 -7.68856 -6.26852 -4.30802 3.11171 3.19710 3.25599 4.19705 4.55935 4.89587 4.98885 5.22868 5.26811 5.44391 5.52484 5.56592 5.68294 5.76089 5.79237 5.82538 5.98389 6.03876 6.06671 6.15835 6.18142 6.27613 6.30661 6.46920 6.52895 6.60080 6.65664 6.72253 6.85591 6.91030 7.05196 7.30972 7.64943 7.73075 8.29320 8.74930 8.79231 9.33217 10.85754 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040949 B = 0.007923 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.606226 B = 3533.164762 C = 3767.811617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.105 4.105 4 C 0.070 3.930 5 H 0.075 0.925 6 C -0.188 4.188 7 N -0.509 5.509 8 C 0.037 3.963 9 C -0.150 4.150 10 C 0.211 3.789 11 O -0.575 6.575 12 C -0.533 4.533 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.887 5.887 16 Si 0.845 3.155 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.236 1.236 20 C 0.059 3.941 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.348 0.652 36 H 0.267 0.733 37 H 0.055 0.945 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.159 -3.329 -4.664 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.143 4.143 4 C -0.039 4.039 5 H 0.093 0.907 6 C -0.247 4.247 7 N -0.233 5.233 8 C -0.090 4.090 9 C -0.188 4.188 10 C 0.171 3.829 11 O -0.384 6.384 12 C -0.571 4.571 13 H 0.097 0.903 14 C -0.127 4.127 15 N -0.524 5.524 16 Si 0.673 3.327 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.160 1.160 20 C -0.068 4.068 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.198 0.802 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.497 -3.938 -5.090 14.057 hybrid contribution 0.611 0.802 1.342 1.678 sum -11.887 -3.135 -3.748 12.852 Atomic orbital electron populations 1.21793 0.96885 1.01019 1.01168 1.21432 0.94357 0.97026 1.02738 1.21583 0.94383 0.97035 1.01262 1.21819 0.94959 0.93642 0.93503 0.90683 1.22494 1.02839 0.98066 1.01281 1.64964 1.13914 1.42059 1.02362 1.23160 0.98446 0.95838 0.91560 1.23593 0.97393 1.00148 0.97685 1.19988 0.89847 0.83407 0.89657 1.86471 1.79188 1.38930 1.33772 1.21500 1.23614 1.15511 0.96450 0.90310 1.25025 0.94311 0.94450 0.98954 1.69888 1.27433 1.27261 1.27814 0.87715 0.80996 0.80233 0.83782 1.19991 1.21398 1.15956 1.22660 0.86207 1.00873 0.97085 0.93386 0.93221 0.93084 0.92705 0.90566 0.92121 0.92441 0.92106 0.91308 0.92941 0.92573 0.91727 0.92615 0.91172 0.80222 0.92324 0.92635 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.46 5.82 -26.73 -0.16 -1.62 16 3 C -0.10 -1.36 4.70 -26.73 -0.13 -1.48 16 4 C 0.07 1.07 2.27 -67.71 -0.15 0.92 16 5 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 6 C -0.19 -2.90 8.18 37.16 0.30 -2.60 16 7 N -0.51 -9.28 4.69 -222.50 -1.04 -10.33 16 8 C 0.04 0.70 5.57 -1.90 -0.01 0.69 16 9 C -0.15 -3.25 4.25 -24.87 -0.11 -3.35 16 10 C 0.21 5.05 0.96 -90.42 -0.09 4.96 16 11 O -0.57 -14.23 12.91 -35.23 -0.45 -14.68 16 12 C -0.53 -14.65 8.82 -34.44 -0.30 -14.95 16 13 H 0.08 2.35 7.59 -52.48 -0.40 1.95 16 14 C 0.08 2.12 5.36 -17.82 -0.10 2.03 16 15 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 16 Si 0.85 19.81 23.20 -169.99 -3.94 15.87 16 17 H -0.27 -6.29 7.03 56.52 0.40 -5.89 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.24 -5.12 4.57 56.52 0.26 -4.87 16 20 C 0.06 1.26 5.91 -2.76 -0.02 1.24 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 1.09 7.75 -51.93 -0.40 0.69 16 26 H 0.06 0.81 7.09 -51.93 -0.37 0.44 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.94 6.40 -51.93 -0.33 0.61 16 29 H 0.07 1.23 6.28 -51.93 -0.33 0.90 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.08 5.46 -51.93 -0.28 0.79 16 32 H 0.06 1.08 7.64 -51.93 -0.40 0.69 16 33 H 0.06 1.18 7.85 -51.93 -0.41 0.77 16 34 H 0.07 1.58 5.34 -51.93 -0.28 1.30 16 35 H 0.35 8.25 4.33 45.56 0.20 8.45 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.06 1.19 5.26 -51.93 -0.27 0.92 16 38 H 0.07 1.51 7.96 -51.93 -0.41 1.10 16 LS Contribution 279.42 15.07 4.21 4.21 Total: -1.00 -28.87 279.42 -6.76 -35.63 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.92 Total: 10.19 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -0.38 Total: -15.39 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.27 Total: -35.83 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.45 Total: -14.68 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -3.94 Total: 15.87 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.87 -6.76 -35.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.580 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds