Wall clock time and date at job start Sun Mar 29 2020 21:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47227 * 2 1 4 4 C 1.53000 * 109.46867 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47355 * 55.00236 * 4 3 2 6 6 C 1.53008 * 109.46868 * 174.99804 * 4 3 2 7 7 N 1.46901 * 109.47606 * 294.99470 * 4 3 2 8 8 C 1.48532 * 111.00346 * 289.07969 * 7 4 3 9 9 C 1.54931 * 103.22553 * 200.27321 * 8 7 4 10 10 C 1.54595 * 102.92350 * 37.41559 * 9 8 7 11 11 O 1.42902 * 110.30939 * 219.12589 * 10 9 8 12 12 C 1.50699 * 110.31191 * 96.95680 * 10 9 8 13 13 H 1.08006 * 120.00027 * 244.28819 * 12 10 9 14 14 C 1.37871 * 120.00246 * 64.28052 * 12 10 9 15 15 N 1.31513 * 120.00494 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 119.99655 * 0.02562 * 14 12 10 17 17 H 1.48501 * 109.47415 * 89.99848 * 16 14 12 18 18 H 1.48503 * 109.46705 * 209.99277 * 16 14 12 19 19 H 1.48496 * 109.47082 * 329.99423 * 16 14 12 20 20 C 1.47899 * 111.00352 * 171.67586 * 7 4 3 21 21 H 1.08995 * 109.47126 * 59.99701 * 1 2 3 22 22 H 1.08996 * 109.46845 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47052 * 300.00027 * 1 2 3 24 24 H 1.08994 * 109.47269 * 239.99811 * 2 1 3 25 25 H 1.09002 * 109.47049 * 119.99920 * 2 1 3 26 26 H 1.09003 * 109.47127 * 60.00019 * 3 2 1 27 27 H 1.09002 * 109.47041 * 299.99925 * 3 2 1 28 28 H 1.08999 * 109.46802 * 52.46129 * 6 4 3 29 29 H 1.09001 * 109.46730 * 172.45622 * 6 4 3 30 30 H 1.08993 * 109.47172 * 292.46103 * 6 4 3 31 31 H 1.08994 * 110.66413 * 318.71351 * 8 7 4 32 32 H 1.08998 * 110.66700 * 81.67150 * 8 7 4 33 33 H 1.09004 * 110.72701 * 279.05451 * 9 8 7 34 34 H 1.09005 * 110.72429 * 155.77125 * 9 8 7 35 35 H 0.96702 * 113.99495 * 295.71512 * 11 10 9 36 36 H 0.97001 * 120.00258 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.90999 * 26.49575 * 20 7 4 38 38 H 1.08997 * 110.08248 * 265.29474 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0802 2.8795 -0.1251 7 7 4.0593 0.8574 1.2562 8 6 3.8090 1.7694 2.4015 9 6 4.8112 1.2743 3.4744 10 6 6.0555 0.8979 2.6377 11 8 6.6563 -0.2929 3.1505 12 6 7.0501 2.0301 2.6409 13 1 7.2907 2.5402 1.7198 14 6 7.6527 2.4149 3.8197 15 7 8.5203 3.4033 3.8227 16 14 7.2369 1.5324 5.4127 17 1 8.1644 0.3882 5.6015 18 1 7.3758 2.4752 6.5517 19 1 5.8400 1.0324 5.3515 20 6 5.5240 0.6574 1.2125 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.6106 3.4998 0.6383 29 1 5.1617 2.8941 0.0095 30 1 3.8315 3.2681 -1.1126 31 1 4.0209 2.8020 2.1244 32 1 2.7828 1.6702 2.7552 33 1 4.4183 0.4013 3.9956 34 1 5.0471 2.0718 4.1791 35 1 7.0093 -0.2010 4.0461 36 1 8.9446 3.6738 4.6520 37 1 5.9756 1.3703 0.5225 38 1 5.7536 -0.3605 0.8974 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:34 Heat of formation + Delta-G solvation = -63.666559 kcal Electronic energy + Delta-G solvation = -17056.816902 eV Core-core repulsion = 14512.486906 eV Total energy + Delta-G solvation = -2544.329996 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77543 -38.00304 -35.39177 -34.50961 -32.84822 -30.06608 -29.69704 -27.59229 -26.32931 -23.74025 -22.34022 -21.43580 -20.43239 -19.19024 -17.74616 -17.34953 -16.26166 -16.06681 -15.38679 -15.17255 -15.11484 -14.61179 -14.52702 -14.05019 -13.72409 -13.58580 -13.46400 -12.90169 -12.73086 -12.67950 -12.49756 -12.20467 -12.16736 -11.85169 -11.65016 -11.50356 -11.32908 -11.29793 -11.09513 -10.81202 -10.42190 -9.20206 -8.42345 -6.52842 1.24696 1.30614 1.38376 2.20268 2.84200 3.12269 3.62514 3.80858 3.93113 4.13610 4.19252 4.27704 4.41331 4.48415 4.54958 4.61147 4.69780 4.78281 4.82806 4.87593 5.00576 5.03301 5.08391 5.11003 5.13447 5.19072 5.24422 5.33141 5.42654 5.45682 5.53841 5.66388 5.94389 6.16785 6.27666 6.53041 6.87885 7.15718 8.73474 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040949 B = 0.007923 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.606226 B = 3533.164762 C = 3767.811617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.097 4.097 4 C 0.068 3.932 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.501 5.501 8 C 0.043 3.957 9 C -0.149 4.149 10 C 0.203 3.797 11 O -0.581 6.581 12 C -0.541 4.541 13 H 0.035 0.965 14 C 0.021 3.979 15 N -0.935 5.935 16 Si 0.907 3.093 17 H -0.263 1.263 18 H -0.287 1.287 19 H -0.206 1.206 20 C 0.064 3.936 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.352 0.648 36 H 0.269 0.731 37 H 0.042 0.958 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 -4.385 -4.333 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.135 4.135 4 C -0.041 4.041 5 H 0.097 0.903 6 C -0.241 4.241 7 N -0.226 5.226 8 C -0.084 4.084 9 C -0.187 4.187 10 C 0.163 3.837 11 O -0.391 6.391 12 C -0.579 4.579 13 H 0.054 0.946 14 C -0.179 4.179 15 N -0.574 5.574 16 Si 0.731 3.269 17 H -0.189 1.189 18 H -0.214 1.214 19 H -0.128 1.128 20 C -0.064 4.064 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.202 0.798 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.075 -5.004 -4.779 16.587 hybrid contribution 1.459 1.178 1.116 2.182 sum -13.616 -3.826 -3.663 14.610 Atomic orbital electron populations 1.21750 0.95218 1.01698 1.01793 1.21393 0.95800 0.96289 1.01890 1.21549 0.91927 0.97747 1.02287 1.21976 0.96852 0.93180 0.92099 0.90333 1.22432 1.00447 0.98476 1.02768 1.65013 1.11365 1.42468 1.03717 1.23151 0.99183 0.95300 0.90806 1.23502 0.96779 1.00343 0.98117 1.20074 0.89822 0.81933 0.91860 1.86462 1.79471 1.38893 1.34239 1.21676 1.24729 1.16450 0.95003 0.94628 1.25908 0.93919 0.95103 1.02921 1.70041 1.29039 1.29295 1.29008 0.86698 0.82563 0.79191 0.78468 1.18889 1.21409 1.12834 1.22520 0.88303 1.00340 0.95273 0.92240 0.92597 0.92972 0.92519 0.92510 0.92143 0.90344 0.92168 0.94739 0.90434 0.93410 0.88761 0.91286 0.92086 0.79782 0.92172 0.93982 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.91 71.98 0.71 -1.88 16 2 C -0.12 -2.55 5.82 30.60 0.18 -2.37 16 3 C -0.10 -2.21 4.70 30.60 0.14 -2.07 16 4 C 0.07 1.95 2.27 44.92 0.10 2.05 16 5 H 0.08 2.22 8.10 -2.39 -0.02 2.21 16 6 C -0.18 -5.47 8.18 71.98 0.59 -4.88 16 7 N -0.50 -17.54 4.69 -857.87 -4.03 -21.57 16 8 C 0.04 1.53 5.57 86.65 0.48 2.01 16 9 C -0.15 -6.18 4.25 31.80 0.13 -6.04 16 10 C 0.20 9.66 0.96 -10.66 -0.01 9.65 16 11 O -0.58 -28.10 12.91 -148.98 -1.92 -30.02 16 12 C -0.54 -30.63 8.82 25.60 0.23 -30.40 16 13 H 0.04 2.25 7.59 -2.91 -0.02 2.23 16 14 C 0.02 1.17 5.36 84.65 0.45 1.63 16 15 N -0.93 -57.15 13.96 21.44 0.30 -56.85 16 16 Si 0.91 40.58 23.20 68.60 1.59 42.17 16 17 H -0.26 -11.30 7.03 99.48 0.70 -10.60 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.21 -8.19 4.57 99.48 0.45 -7.73 16 20 C 0.06 2.71 5.91 86.45 0.51 3.22 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.47 7.75 -2.39 -0.02 1.46 16 26 H 0.06 1.40 7.09 -2.39 -0.02 1.38 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.79 6.40 -2.39 -0.02 1.78 16 29 H 0.03 1.26 6.28 -2.39 -0.01 1.24 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.78 5.46 -2.39 -0.01 1.77 16 32 H 0.09 2.83 7.64 -2.39 -0.02 2.81 16 33 H 0.07 2.69 7.85 -2.39 -0.02 2.67 16 34 H 0.06 2.63 5.34 -2.38 -0.01 2.61 16 35 H 0.35 16.01 4.33 -74.06 -0.32 15.69 16 36 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.04 1.88 5.26 -2.38 -0.01 1.87 16 38 H 0.07 2.94 7.96 -2.39 -0.02 2.92 16 Total: -1.00 -63.28 279.42 -0.08 -63.36 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.45 Total: 32.01 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 3.52 Total: -29.10 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -3.73 Total: -78.41 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.92 Total: -30.02 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.59 Total: 42.17 kcal Total: -63.28 -0.08 -63.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.305 kcal (2) G-P(sol) polarization free energy of solvation -63.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds