Wall clock time and date at job start Sun Mar 29 2020 21:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47432 * 2 1 4 4 C 1.53001 * 109.47253 * 175.22509 * 3 2 1 5 5 H 1.08996 * 109.47273 * 54.44837 * 4 3 2 6 6 C 1.53000 * 109.46817 * 174.44486 * 4 3 2 7 7 N 1.46900 * 109.47253 * 294.44136 * 4 3 2 8 8 C 1.47439 * 110.99735 * 176.89540 * 7 4 3 9 9 C 1.54317 * 107.23240 * 123.26353 * 8 7 4 10 10 C 1.55146 * 103.01990 * 22.28150 * 9 8 7 11 11 O 1.42902 * 110.99041 * 82.43849 * 10 9 8 12 12 C 1.50703 * 110.99082 * 206.21899 * 10 9 8 13 13 H 1.08002 * 119.99797 * 118.54629 * 12 10 9 14 14 C 1.37871 * 120.00184 * 298.54781 * 12 10 9 15 15 N 1.31513 * 119.99717 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00025 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46972 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47567 * 119.99906 * 16 14 12 19 19 H 1.48510 * 109.46847 * 239.99555 * 16 14 12 20 20 C 1.47843 * 111.00136 * 297.74201 * 7 4 3 21 21 H 1.09005 * 109.47235 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47041 * 59.99789 * 1 2 3 23 23 H 1.08994 * 109.47278 * 299.99726 * 1 2 3 24 24 H 1.08996 * 109.47188 * 120.00361 * 2 1 3 25 25 H 1.09007 * 109.46971 * 240.00265 * 2 1 3 26 26 H 1.09001 * 109.47241 * 295.22696 * 3 2 1 27 27 H 1.09006 * 109.46531 * 55.22591 * 3 2 1 28 28 H 1.09002 * 109.47266 * 173.06448 * 6 4 3 29 29 H 1.09005 * 109.47398 * 293.06521 * 6 4 3 30 30 H 1.09001 * 109.47461 * 53.06574 * 6 4 3 31 31 H 1.09007 * 109.89065 * 242.66437 * 8 7 4 32 32 H 1.09001 * 109.89281 * 3.85500 * 8 7 4 33 33 H 1.08998 * 110.70858 * 140.66472 * 9 8 7 34 34 H 1.08998 * 110.70589 * 263.72628 * 9 8 7 35 35 H 0.96699 * 113.99474 * 61.45767 * 11 10 9 36 36 H 0.97008 * 119.99896 * 180.02562 * 15 14 12 37 37 H 1.09001 * 110.37326 * 332.46425 * 20 7 4 38 38 H 1.09000 * 110.37465 * 94.80407 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5653 1.4441 0.1201 5 1 3.9925 0.8240 -0.6680 6 6 4.0862 2.8759 -0.0189 7 7 3.9539 0.9067 1.4309 8 6 5.4208 0.8241 1.5542 9 6 5.8216 1.6419 2.8000 10 6 4.5143 1.6702 3.6350 11 8 4.3692 0.4716 4.3995 12 6 4.4693 2.8844 4.5265 13 1 3.6828 3.6145 4.4051 14 6 5.4322 3.0633 5.4969 15 7 6.3897 2.1740 5.6449 16 14 5.3760 4.5681 6.6023 17 1 4.2080 5.4085 6.2352 18 1 5.2514 4.1380 8.0181 19 1 6.6243 5.3544 6.4319 20 6 3.4364 1.7548 2.5257 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.7482 1.9310 -0.9297 27 1 1.6085 1.9803 0.8442 28 1 5.1562 2.8951 0.1885 29 1 3.9064 3.2311 -1.0336 30 1 3.5673 3.5218 0.6894 31 1 5.7245 -0.2153 1.6795 32 1 5.8920 1.2459 0.6664 33 1 6.6190 1.1415 3.3494 34 1 6.1239 2.6505 2.5181 35 1 5.0771 0.3269 5.0421 36 1 7.0670 2.2996 6.3280 37 1 3.3211 2.7842 2.1863 38 1 2.4856 1.3658 2.8901 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:36 Heat of formation + Delta-G solvation = -62.300101 kcal Electronic energy + Delta-G solvation = -17033.403424 eV Core-core repulsion = 14489.132683 eV Total energy + Delta-G solvation = -2544.270742 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.99589 -35.84717 -33.74113 -32.10054 -31.11072 -28.13610 -27.85109 -26.31620 -24.67407 -21.66635 -20.86259 -19.81644 -18.62387 -17.03213 -15.60601 -14.90344 -14.82706 -14.35402 -14.08702 -13.81195 -13.12043 -12.93898 -12.68550 -12.36100 -11.95600 -11.65435 -11.47673 -11.30576 -11.19903 -11.06945 -10.86770 -10.67560 -10.46076 -10.38936 -10.33879 -10.11002 -10.03777 -9.76390 -9.12299 -8.56663 -8.02379 -7.43736 -6.18226 -4.26080 3.21739 3.30524 3.34622 4.31314 4.74035 5.03919 5.10286 5.33545 5.36211 5.56183 5.64768 5.78656 5.82907 5.86622 5.94812 6.04558 6.09863 6.15661 6.18719 6.21420 6.30484 6.41913 6.47479 6.64082 6.65868 6.74091 6.81477 6.97651 7.15130 7.48349 7.54616 7.74749 7.85385 7.93533 8.22865 8.76624 9.42671 9.56980 10.88609 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035055 B = 0.007512 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.561724 B = 3726.435645 C = 3799.644774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.108 4.108 4 C 0.074 3.926 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.518 5.518 8 C 0.041 3.959 9 C -0.142 4.142 10 C 0.251 3.749 11 O -0.579 6.579 12 C -0.534 4.534 13 H 0.060 0.940 14 C 0.071 3.929 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.284 1.284 20 C 0.056 3.944 21 H 0.048 0.952 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.375 0.625 36 H 0.265 0.735 37 H 0.053 0.947 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 -1.053 -9.573 10.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.146 4.146 4 C -0.035 4.035 5 H 0.089 0.911 6 C -0.246 4.246 7 N -0.242 5.242 8 C -0.086 4.086 9 C -0.182 4.182 10 C 0.210 3.790 11 O -0.387 6.387 12 C -0.572 4.572 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.210 1.210 20 C -0.071 4.071 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.224 0.776 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.077 -1.659 -9.815 11.174 hybrid contribution 1.039 1.802 0.854 2.248 sum -4.038 0.143 -8.961 9.830 Atomic orbital electron populations 1.21786 0.96851 1.00996 1.01196 1.21434 0.94516 0.96974 1.02652 1.21626 0.94618 0.97229 1.01128 1.21842 0.95362 0.93386 0.92957 0.91086 1.22512 1.02015 0.98909 1.01168 1.63773 1.10415 1.48729 1.01271 1.22825 0.87721 1.00107 0.97994 1.23234 1.01588 0.98280 0.95057 1.19555 0.88398 0.83690 0.87326 1.86150 1.53047 1.44164 1.55310 1.21598 1.11436 1.06896 1.17292 0.92198 1.24997 0.94697 0.96569 0.96868 1.69755 1.14463 1.35233 1.33987 0.86458 0.77951 0.82658 0.80443 1.19717 1.20795 1.20962 1.23037 0.99070 0.94447 0.90511 0.93245 0.93541 0.92870 0.90235 0.92982 0.92661 0.91784 0.92230 0.93127 0.91896 0.91954 0.94423 0.90687 0.92826 0.77576 0.92511 0.92940 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.63 5.88 -26.74 -0.16 -1.79 16 3 C -0.11 -1.55 4.60 -26.73 -0.12 -1.67 16 4 C 0.07 1.18 2.19 -67.71 -0.15 1.03 16 5 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 6 C -0.19 -2.90 8.54 37.16 0.32 -2.58 16 7 N -0.52 -10.05 4.58 -223.29 -1.02 -11.07 16 8 C 0.04 0.82 6.25 -2.84 -0.02 0.80 16 9 C -0.14 -3.32 5.37 -24.91 -0.13 -3.45 16 10 C 0.25 6.28 0.87 -89.63 -0.08 6.20 16 11 O -0.58 -15.39 13.16 -35.23 -0.46 -15.85 16 12 C -0.53 -14.43 8.27 -34.44 -0.28 -14.71 16 13 H 0.06 1.62 7.79 -52.49 -0.41 1.21 16 14 C 0.07 1.89 5.29 -17.82 -0.09 1.80 16 15 N -0.89 -24.11 10.75 55.43 0.60 -23.51 16 16 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 C 0.06 1.23 4.33 -2.30 -0.01 1.22 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.08 1.29 7.64 -51.93 -0.40 0.89 16 25 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.99 7.02 -51.93 -0.36 0.63 16 28 H 0.06 0.98 6.36 -51.93 -0.33 0.65 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.04 6.21 -51.93 -0.32 0.72 16 31 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.04 0.68 6.26 -51.93 -0.32 0.35 16 33 H 0.07 1.86 7.53 -51.93 -0.39 1.47 16 34 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 35 H 0.38 10.03 7.56 45.56 0.34 10.38 16 36 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.05 1.12 5.37 -51.93 -0.28 0.84 16 38 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 LS Contribution 292.16 15.07 4.40 4.40 Total: -1.00 -27.06 292.16 -7.70 -34.76 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.83 Total: 10.08 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -0.36 Total: -14.60 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.43 Total: -34.58 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.46 Total: -15.85 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.06 -7.70 -34.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.537 kcal (2) G-P(sol) polarization free energy of solvation -27.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds