Wall clock time and date at job start Sun Mar 29 2020 21:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47432 * 2 1 4 4 C 1.53001 * 109.47253 * 175.22509 * 3 2 1 5 5 H 1.08996 * 109.47273 * 54.44837 * 4 3 2 6 6 C 1.53000 * 109.46817 * 174.44486 * 4 3 2 7 7 N 1.46900 * 109.47253 * 294.44136 * 4 3 2 8 8 C 1.47439 * 110.99735 * 176.89540 * 7 4 3 9 9 C 1.54317 * 107.23240 * 123.26353 * 8 7 4 10 10 C 1.55146 * 103.01990 * 22.28150 * 9 8 7 11 11 O 1.42902 * 110.99041 * 82.43849 * 10 9 8 12 12 C 1.50703 * 110.99082 * 206.21899 * 10 9 8 13 13 H 1.08002 * 119.99797 * 118.54629 * 12 10 9 14 14 C 1.37871 * 120.00184 * 298.54781 * 12 10 9 15 15 N 1.31513 * 119.99717 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00025 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46972 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47567 * 119.99906 * 16 14 12 19 19 H 1.48510 * 109.46847 * 239.99555 * 16 14 12 20 20 C 1.47843 * 111.00136 * 297.74201 * 7 4 3 21 21 H 1.09005 * 109.47235 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47041 * 59.99789 * 1 2 3 23 23 H 1.08994 * 109.47278 * 299.99726 * 1 2 3 24 24 H 1.08996 * 109.47188 * 120.00361 * 2 1 3 25 25 H 1.09007 * 109.46971 * 240.00265 * 2 1 3 26 26 H 1.09001 * 109.47241 * 295.22696 * 3 2 1 27 27 H 1.09006 * 109.46531 * 55.22591 * 3 2 1 28 28 H 1.09002 * 109.47266 * 173.06448 * 6 4 3 29 29 H 1.09005 * 109.47398 * 293.06521 * 6 4 3 30 30 H 1.09001 * 109.47461 * 53.06574 * 6 4 3 31 31 H 1.09007 * 109.89065 * 242.66437 * 8 7 4 32 32 H 1.09001 * 109.89281 * 3.85500 * 8 7 4 33 33 H 1.08998 * 110.70858 * 140.66472 * 9 8 7 34 34 H 1.08998 * 110.70589 * 263.72628 * 9 8 7 35 35 H 0.96699 * 113.99474 * 61.45767 * 11 10 9 36 36 H 0.97008 * 119.99896 * 180.02562 * 15 14 12 37 37 H 1.09001 * 110.37326 * 332.46425 * 20 7 4 38 38 H 1.09000 * 110.37465 * 94.80407 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5653 1.4441 0.1201 5 1 3.9925 0.8240 -0.6680 6 6 4.0862 2.8759 -0.0189 7 7 3.9539 0.9067 1.4309 8 6 5.4208 0.8241 1.5542 9 6 5.8216 1.6419 2.8000 10 6 4.5143 1.6702 3.6350 11 8 4.3692 0.4716 4.3995 12 6 4.4693 2.8844 4.5265 13 1 3.6828 3.6145 4.4051 14 6 5.4322 3.0633 5.4969 15 7 6.3897 2.1740 5.6449 16 14 5.3760 4.5681 6.6023 17 1 4.2080 5.4085 6.2352 18 1 5.2514 4.1380 8.0181 19 1 6.6243 5.3544 6.4319 20 6 3.4364 1.7548 2.5257 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.7482 1.9310 -0.9297 27 1 1.6085 1.9803 0.8442 28 1 5.1562 2.8951 0.1885 29 1 3.9064 3.2311 -1.0336 30 1 3.5673 3.5218 0.6894 31 1 5.7245 -0.2153 1.6795 32 1 5.8920 1.2459 0.6664 33 1 6.6190 1.1415 3.3494 34 1 6.1239 2.6505 2.5181 35 1 5.0771 0.3269 5.0421 36 1 7.0670 2.2996 6.3280 37 1 3.3211 2.7842 2.1863 38 1 2.4856 1.3658 2.8901 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:36 Heat of formation + Delta-G solvation = -80.338057 kcal Electronic energy + Delta-G solvation = -17034.185609 eV Core-core repulsion = 14489.132683 eV Total energy + Delta-G solvation = -2545.052926 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60702 -37.51996 -35.19386 -34.17991 -32.54068 -29.95561 -29.50327 -27.44975 -26.60168 -23.06414 -22.13801 -21.65040 -20.16119 -19.01649 -17.15654 -16.91601 -16.48090 -15.90877 -15.52971 -15.26197 -14.61893 -14.46014 -14.16549 -13.82982 -13.37164 -13.35651 -13.06283 -12.91902 -12.73835 -12.62793 -12.47867 -12.31968 -12.22802 -11.99474 -11.72578 -11.57854 -11.31863 -11.25800 -11.05675 -10.59554 -10.05409 -8.99844 -8.21645 -6.37397 1.37289 1.40699 1.51140 2.37222 3.02640 3.24210 3.84575 4.00413 4.08726 4.16339 4.29675 4.39271 4.41970 4.49883 4.56012 4.73048 4.79019 4.79427 4.88471 4.95847 5.03666 5.07807 5.12750 5.15864 5.27052 5.34504 5.41664 5.51038 5.53403 5.59747 5.64681 5.82378 6.03470 6.29454 6.43647 6.69074 7.34354 7.46838 8.83655 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035055 B = 0.007512 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.561724 B = 3726.435645 C = 3799.644774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.105 4.105 4 C 0.070 3.930 5 H 0.088 0.912 6 C -0.182 4.182 7 N -0.522 5.522 8 C 0.049 3.951 9 C -0.132 4.132 10 C 0.232 3.768 11 O -0.589 6.589 12 C -0.560 4.560 13 H 0.052 0.948 14 C 0.030 3.970 15 N -0.911 5.911 16 Si 0.958 3.042 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.277 1.277 20 C 0.071 3.929 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.370 0.630 36 H 0.268 0.732 37 H 0.056 0.944 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -0.528 -11.102 12.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.142 4.142 4 C -0.038 4.038 5 H 0.106 0.894 6 C -0.241 4.241 7 N -0.246 5.246 8 C -0.078 4.078 9 C -0.171 4.171 10 C 0.192 3.808 11 O -0.396 6.396 12 C -0.598 4.598 13 H 0.070 0.930 14 C -0.171 4.171 15 N -0.551 5.551 16 Si 0.783 3.217 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.203 1.203 20 C -0.056 4.056 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.218 0.782 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.548 -1.137 -11.360 12.693 hybrid contribution 1.181 1.618 1.311 2.394 sum -4.367 0.481 -10.048 10.967 Atomic orbital electron populations 1.21753 0.95474 1.01715 1.01575 1.21387 0.95771 0.96376 1.01805 1.21618 0.93220 0.97637 1.01751 1.22025 0.96692 0.93899 0.91204 0.89376 1.22453 1.00867 0.98201 1.02575 1.63720 1.09797 1.48724 1.02352 1.22728 0.88296 0.99508 0.97284 1.23017 1.00059 0.97911 0.96142 1.19835 0.90515 0.82565 0.87881 1.86145 1.52988 1.45005 1.55450 1.21851 1.11664 1.07702 1.18577 0.93009 1.25688 0.94313 0.99119 0.97947 1.69840 1.14645 1.36315 1.34253 0.85519 0.78009 0.79533 0.78605 1.19576 1.20451 1.20298 1.22790 0.97474 0.94962 0.90423 0.92430 0.91795 0.93832 0.93233 0.91617 0.89983 0.93466 0.93406 0.90103 0.93427 0.92074 0.91970 0.92834 0.93941 0.78205 0.92274 0.92614 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.91 71.98 0.71 -2.52 16 2 C -0.12 -2.97 5.88 30.59 0.18 -2.79 16 3 C -0.10 -2.76 4.60 30.59 0.14 -2.62 16 4 C 0.07 2.08 2.19 44.92 0.10 2.18 16 5 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 6 C -0.18 -5.22 8.54 71.98 0.61 -4.60 16 7 N -0.52 -19.80 4.58 -860.37 -3.94 -23.75 16 8 C 0.05 1.93 6.25 86.65 0.54 2.47 16 9 C -0.13 -6.22 5.37 31.78 0.17 -6.05 16 10 C 0.23 11.82 0.87 -10.15 -0.01 11.81 16 11 O -0.59 -32.04 13.16 -148.98 -1.96 -34.00 16 12 C -0.56 -30.73 8.27 25.60 0.21 -30.52 16 13 H 0.05 2.84 7.79 -2.91 -0.02 2.82 16 14 C 0.03 1.61 5.29 84.65 0.45 2.05 16 15 N -0.91 -49.61 10.75 21.45 0.23 -49.38 16 16 Si 0.96 42.73 29.54 68.60 2.03 44.75 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 C 0.07 3.12 4.33 86.77 0.38 3.50 16 21 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 23 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 1.57 7.64 -2.39 -0.02 1.55 16 25 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.41 7.02 -2.38 -0.02 1.39 16 28 H 0.05 1.47 6.36 -2.39 -0.02 1.46 16 29 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.05 1.50 6.21 -2.39 -0.01 1.49 16 31 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.06 2.12 6.26 -2.39 -0.01 2.10 16 33 H 0.05 2.71 7.53 -2.39 -0.02 2.69 16 34 H 0.04 2.04 8.04 -2.39 -0.02 2.02 16 35 H 0.37 20.41 7.56 -74.06 -0.56 19.85 16 36 H 0.27 13.84 8.31 -92.70 -0.77 13.07 16 37 H 0.06 2.40 5.37 -2.39 -0.01 2.38 16 38 H 0.05 2.41 8.09 -2.39 -0.02 2.39 16 Total: -1.00 -57.59 292.16 0.30 -57.28 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.46 Total: 32.16 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 3.48 Total: -27.08 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -3.71 Total: -73.12 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.96 Total: -34.00 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -57.59 0.30 -57.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.054 kcal (2) G-P(sol) polarization free energy of solvation -57.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds