Wall clock time and date at job start Sun Mar 29 2020 22:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.86697 * 2 1 4 4 C 1.54101 * 109.87325 * 238.99495 * 2 1 3 5 5 C 1.54814 * 104.18538 * 238.54223 * 4 2 1 6 6 H 1.09004 * 110.90471 * 97.35760 * 5 4 2 7 7 N 1.46896 * 110.90862 * 220.92273 * 5 4 2 8 8 C 1.46898 * 111.00475 * 205.00239 * 7 5 4 9 9 C 1.52992 * 109.47518 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.47195 * 60.00008 * 9 8 7 11 11 C 1.53002 * 109.47303 * 300.00403 * 9 8 7 12 12 C 1.50700 * 109.47257 * 179.97438 * 9 8 7 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 9 8 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 9 8 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 9 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 C 1.54994 * 102.09357 * 339.12557 * 5 4 2 21 21 O 1.43743 * 109.87869 * 121.16638 * 2 1 3 22 22 H 1.08999 * 109.46786 * 181.00607 * 1 2 3 23 23 H 1.09001 * 109.47096 * 301.00050 * 1 2 3 24 24 H 1.08993 * 109.47036 * 61.00430 * 1 2 3 25 25 H 1.09004 * 110.48263 * 119.87299 * 4 2 1 26 26 H 1.08998 * 110.49582 * 357.22183 * 4 2 1 27 27 H 1.00902 * 111.00361 * 328.96389 * 7 5 4 28 28 H 1.09004 * 109.46827 * 59.99837 * 8 7 5 29 29 H 1.09005 * 109.47082 * 300.00374 * 8 7 5 30 30 H 1.08998 * 109.47453 * 180.02562 * 10 9 8 31 31 H 1.08996 * 109.47248 * 300.00419 * 10 9 8 32 32 H 1.09005 * 109.46932 * 60.00069 * 10 9 8 33 33 H 1.09002 * 109.46768 * 299.99531 * 11 9 8 34 34 H 1.08996 * 109.46948 * 59.99698 * 11 9 8 35 35 H 1.08996 * 109.46989 * 180.02562 * 11 9 8 36 36 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 37 37 H 1.09000 * 110.61835 * 155.52234 * 20 5 4 38 38 H 1.09001 * 110.61578 * 278.52191 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0539 -0.7465 -1.2422 5 6 2.9195 -1.8906 -0.6602 6 1 2.3541 -2.8214 -0.6144 7 7 4.1508 -2.0660 -1.4420 8 6 4.6662 -3.4355 -1.3123 9 6 5.9462 -3.5791 -2.1379 10 6 6.9955 -2.5890 -1.6284 11 6 5.6403 -3.2864 -3.6082 12 6 6.4752 -4.9839 -2.0043 13 1 5.9511 -5.7023 -1.3914 14 6 7.6290 -5.3517 -2.6636 15 7 8.2647 -4.4781 -3.4135 16 14 8.2843 -7.0931 -2.4986 17 1 7.6991 -7.9453 -3.5646 18 1 9.7633 -7.0801 -2.6313 19 1 7.9114 -7.6383 -1.1685 20 6 3.2379 -1.3652 0.7628 21 8 2.0188 -0.6996 1.1567 22 1 -0.3633 -1.0275 0.0180 23 1 -0.3633 0.5293 0.8809 24 1 -0.3633 0.4981 -0.8988 25 1 2.6619 -0.0833 -1.8576 26 1 1.2246 -1.1524 -1.8215 27 1 4.0014 -1.8261 -2.4106 28 1 3.9184 -4.1409 -1.6748 29 1 4.8845 -3.6439 -0.2648 30 1 7.9073 -2.6909 -2.2169 31 1 6.6131 -1.5728 -1.7246 32 1 7.2134 -2.7975 -0.5809 33 1 4.8928 -3.9918 -3.9712 34 1 5.2580 -2.2703 -3.7044 35 1 6.5522 -3.3892 -4.1964 36 1 9.0766 -4.7368 -3.8770 37 1 3.4585 -2.1928 1.4370 38 1 4.0685 -0.6599 0.7346 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592368480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:40 Heat of formation + Delta-G solvation = -57.593707 kcal Electronic energy + Delta-G solvation = -16470.165910 eV Core-core repulsion = 13926.099253 eV Total energy + Delta-G solvation = -2544.066657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.49117 -36.71720 -33.92943 -32.11704 -31.17887 -28.58730 -25.85733 -25.52677 -25.22553 -23.82101 -21.29591 -20.61936 -18.49070 -16.35076 -15.86027 -15.59890 -15.28564 -14.89407 -14.40039 -13.66049 -13.51522 -13.01978 -12.67460 -12.37988 -12.27927 -12.06423 -11.72368 -11.22515 -11.21344 -10.96590 -10.87919 -10.72310 -10.61087 -10.44092 -10.19946 -10.06470 -9.59267 -9.39763 -9.08251 -8.64110 -8.30277 -7.80449 -5.92360 -4.02755 3.30729 3.37946 3.41040 3.94428 4.43113 4.59798 4.75571 4.80187 5.06431 5.26111 5.33281 5.42533 5.44236 5.66420 5.76755 5.84765 5.93485 6.06532 6.12209 6.12563 6.28397 6.39734 6.68988 6.86110 6.98275 7.06966 7.14366 7.35748 7.45005 7.69449 7.74082 7.81271 7.90403 8.19108 8.32510 8.54236 8.98496 9.62357 11.08203 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.056506 B = 0.005489 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.399966 B = 5100.272571 C = 5216.337265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.066 0.934 4 C -0.156 4.156 5 C 0.053 3.947 6 H 0.055 0.945 7 N -0.675 5.675 8 C 0.074 3.926 9 C 0.068 3.932 10 C -0.119 4.119 11 C -0.133 4.133 12 C -0.507 4.507 13 H 0.052 0.948 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.058 3.942 21 O -0.382 6.382 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.341 0.659 28 H 0.014 0.986 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.010 0.990 35 H 0.084 0.916 36 H 0.258 0.742 37 H 0.088 0.912 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.003 7.300 3.300 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 H 0.084 0.916 4 C -0.194 4.194 5 C -0.058 4.058 6 H 0.073 0.927 7 N -0.309 5.309 8 C -0.054 4.054 9 C 0.067 3.933 10 C -0.177 4.177 11 C -0.190 4.190 12 C -0.546 4.546 13 H 0.070 0.930 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.019 4.019 21 O -0.301 6.301 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.161 0.839 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.538 7.557 3.882 13.536 hybrid contribution -0.140 -1.554 -0.700 1.710 sum -10.678 6.004 3.182 12.657 Atomic orbital electron populations 1.21938 0.94192 1.02627 1.02005 1.22598 0.94627 0.95747 0.85267 0.91632 1.23201 0.99937 0.98106 0.98177 1.23058 0.90937 0.96968 0.94871 0.92692 1.60621 1.26848 1.28097 1.15287 1.22234 0.97560 0.85102 1.00500 1.18103 0.89445 0.94928 0.90783 1.21640 1.01500 0.95830 0.98705 1.21839 1.01592 0.95240 1.00362 1.21103 1.08741 0.95843 1.28880 0.93008 1.24885 0.96611 0.96901 0.95164 1.69834 1.18082 1.33541 1.30890 0.86651 0.78044 0.85242 0.78359 1.20873 1.21282 1.20054 1.23570 0.86932 0.96492 0.94892 1.88840 1.40500 1.67660 1.33065 0.92034 0.92156 0.91504 0.89870 0.90739 0.83888 0.96726 0.92487 0.90747 0.96140 0.96261 0.96224 0.97092 0.89750 0.93185 0.89388 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.36 37.16 0.35 -1.14 16 2 C 0.08 0.92 4.06 -26.15 -0.11 0.81 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.16 -1.92 6.15 -25.20 -0.15 -2.08 16 5 C 0.05 0.79 3.46 -65.71 -0.23 0.56 16 6 H 0.06 0.86 7.83 -51.93 -0.41 0.45 16 7 N -0.67 -11.76 5.58 -104.61 -0.58 -12.35 16 8 C 0.07 1.53 4.45 -3.83 -0.02 1.51 16 9 C 0.07 1.63 0.57 -155.66 -0.09 1.54 16 10 C -0.12 -2.87 8.09 37.16 0.30 -2.57 16 11 C -0.13 -3.09 7.92 37.16 0.29 -2.79 16 12 C -0.51 -13.58 8.01 -34.44 -0.28 -13.85 16 13 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 14 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 15 N -0.88 -24.36 9.35 55.43 0.52 -23.84 16 16 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.06 0.87 7.41 38.21 0.28 1.15 16 21 O -0.38 -5.66 11.19 -35.23 -0.39 -6.05 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 26 H 0.07 0.83 7.70 -51.93 -0.40 0.43 16 27 H 0.34 5.82 6.38 -39.29 -0.25 5.57 16 28 H 0.01 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.97 6.08 -51.93 -0.32 1.66 16 31 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 35 H 0.08 2.19 6.06 -51.93 -0.31 1.88 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 295.17 15.07 4.45 4.45 Total: -1.00 -27.29 295.17 -7.37 -34.66 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.60 Total: 2.30 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 0.26 Total: -15.19 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.06 Total: -36.19 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.39 Total: -6.05 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.29 -7.37 -34.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592368480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.936 kcal (2) G-P(sol) polarization free energy of solvation -27.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds