Wall clock time and date at job start Sun Mar 29 2020 22:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.86697 * 2 1 4 4 C 1.54101 * 109.87325 * 238.99495 * 2 1 3 5 5 C 1.54814 * 104.18538 * 238.54223 * 4 2 1 6 6 H 1.09004 * 110.90471 * 97.35760 * 5 4 2 7 7 N 1.46896 * 110.90862 * 220.92273 * 5 4 2 8 8 C 1.46898 * 111.00475 * 205.00239 * 7 5 4 9 9 C 1.52992 * 109.47518 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.47195 * 60.00008 * 9 8 7 11 11 C 1.53002 * 109.47303 * 300.00403 * 9 8 7 12 12 C 1.50700 * 109.47257 * 179.97438 * 9 8 7 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 9 8 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 9 8 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 9 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 C 1.54994 * 102.09357 * 339.12557 * 5 4 2 21 21 O 1.43743 * 109.87869 * 121.16638 * 2 1 3 22 22 H 1.08999 * 109.46786 * 181.00607 * 1 2 3 23 23 H 1.09001 * 109.47096 * 301.00050 * 1 2 3 24 24 H 1.08993 * 109.47036 * 61.00430 * 1 2 3 25 25 H 1.09004 * 110.48263 * 119.87299 * 4 2 1 26 26 H 1.08998 * 110.49582 * 357.22183 * 4 2 1 27 27 H 1.00902 * 111.00361 * 328.96389 * 7 5 4 28 28 H 1.09004 * 109.46827 * 59.99837 * 8 7 5 29 29 H 1.09005 * 109.47082 * 300.00374 * 8 7 5 30 30 H 1.08998 * 109.47453 * 180.02562 * 10 9 8 31 31 H 1.08996 * 109.47248 * 300.00419 * 10 9 8 32 32 H 1.09005 * 109.46932 * 60.00069 * 10 9 8 33 33 H 1.09002 * 109.46768 * 299.99531 * 11 9 8 34 34 H 1.08996 * 109.46948 * 59.99698 * 11 9 8 35 35 H 1.08996 * 109.46989 * 180.02562 * 11 9 8 36 36 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 37 37 H 1.09000 * 110.61835 * 155.52234 * 20 5 4 38 38 H 1.09001 * 110.61578 * 278.52191 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0539 -0.7465 -1.2422 5 6 2.9195 -1.8906 -0.6602 6 1 2.3541 -2.8214 -0.6144 7 7 4.1508 -2.0660 -1.4420 8 6 4.6662 -3.4355 -1.3123 9 6 5.9462 -3.5791 -2.1379 10 6 6.9955 -2.5890 -1.6284 11 6 5.6403 -3.2864 -3.6082 12 6 6.4752 -4.9839 -2.0043 13 1 5.9511 -5.7023 -1.3914 14 6 7.6290 -5.3517 -2.6636 15 7 8.2647 -4.4781 -3.4135 16 14 8.2843 -7.0931 -2.4986 17 1 7.6991 -7.9453 -3.5646 18 1 9.7633 -7.0801 -2.6313 19 1 7.9114 -7.6383 -1.1685 20 6 3.2379 -1.3652 0.7628 21 8 2.0188 -0.6996 1.1567 22 1 -0.3633 -1.0275 0.0180 23 1 -0.3633 0.5293 0.8809 24 1 -0.3633 0.4981 -0.8988 25 1 2.6619 -0.0833 -1.8576 26 1 1.2246 -1.1524 -1.8215 27 1 4.0014 -1.8261 -2.4106 28 1 3.9184 -4.1409 -1.6748 29 1 4.8845 -3.6439 -0.2648 30 1 7.9073 -2.6909 -2.2169 31 1 6.6131 -1.5728 -1.7246 32 1 7.2134 -2.7975 -0.5809 33 1 4.8928 -3.9918 -3.9712 34 1 5.2580 -2.2703 -3.7044 35 1 6.5522 -3.3892 -4.1964 36 1 9.0766 -4.7368 -3.8770 37 1 3.4585 -2.1928 1.4370 38 1 4.0685 -0.6599 0.7346 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592368480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:40 Heat of formation + Delta-G solvation = -74.170925 kcal Electronic energy + Delta-G solvation = -16470.884753 eV Core-core repulsion = 13926.099253 eV Total energy + Delta-G solvation = -2544.785499 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61023 -38.41084 -35.52143 -33.27561 -32.81271 -29.94937 -27.52498 -27.24813 -26.76705 -25.48848 -22.36598 -21.74619 -20.35159 -17.98159 -17.23389 -17.02685 -16.54808 -16.35886 -15.92867 -15.13963 -14.98558 -14.33864 -14.26642 -13.87425 -13.39579 -13.31264 -13.06160 -12.97121 -12.83572 -12.56139 -12.48706 -12.19917 -12.11756 -12.06862 -11.78999 -11.66461 -11.30617 -10.90779 -10.66364 -10.58335 -10.33869 -9.25284 -7.96701 -6.13390 1.42166 1.44754 1.52888 2.46469 2.86988 3.25597 3.40232 3.59848 3.84970 4.05814 4.25819 4.36452 4.46467 4.55767 4.61642 4.75393 4.78155 4.85678 4.86699 4.96015 5.00435 5.07980 5.12172 5.17979 5.28810 5.31257 5.43045 5.54109 5.70396 5.77534 5.92414 6.16842 6.25795 6.34041 6.48776 6.60946 6.95769 7.54222 9.01372 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.056506 B = 0.005489 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.399966 B = 5100.272571 C = 5216.337265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.074 0.926 4 C -0.148 4.148 5 C 0.050 3.950 6 H 0.050 0.950 7 N -0.673 5.673 8 C 0.090 3.910 9 C 0.058 3.942 10 C -0.106 4.106 11 C -0.122 4.122 12 C -0.527 4.527 13 H 0.043 0.957 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.943 3.057 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.060 3.940 21 O -0.396 6.396 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.345 0.655 28 H 0.010 0.990 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.010 0.990 33 H 0.017 0.983 34 H 0.036 0.964 35 H 0.056 0.944 36 H 0.257 0.743 37 H 0.084 0.916 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.232 7.858 3.222 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.092 0.908 4 C -0.186 4.186 5 C -0.060 4.060 6 H 0.068 0.932 7 N -0.307 5.307 8 C -0.039 4.039 9 C 0.058 3.942 10 C -0.163 4.163 11 C -0.179 4.179 12 C -0.566 4.566 13 H 0.062 0.938 14 C -0.176 4.176 15 N -0.542 5.542 16 Si 0.770 3.230 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.017 4.017 21 O -0.316 6.316 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.166 0.834 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.781 8.125 3.806 14.808 hybrid contribution 0.219 -1.683 -0.659 1.821 sum -11.562 6.442 3.147 13.604 Atomic orbital electron populations 1.21940 0.92407 1.02718 1.03316 1.22838 0.96092 0.95795 0.84188 0.90761 1.23178 0.99951 0.97040 0.98393 1.23079 0.90225 0.97906 0.94818 0.93161 1.60508 1.28513 1.25825 1.15823 1.21881 0.96041 0.86850 0.99131 1.18161 0.90801 0.93508 0.91760 1.21472 1.00515 0.96836 0.97518 1.21669 1.00182 0.96738 0.99354 1.21429 1.09094 0.97244 1.28798 0.93824 1.25517 0.96967 1.00028 0.95078 1.69963 1.18167 1.34791 1.31240 0.85788 0.77394 0.81522 0.78258 1.20498 1.21092 1.19891 1.23478 0.87088 0.96310 0.94829 1.88832 1.40266 1.67958 1.34506 0.92496 0.91854 0.89281 0.89263 0.89149 0.83443 0.97166 0.93371 0.93358 0.94548 0.97102 0.96414 0.94518 0.92551 0.93325 0.89777 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.36 71.98 0.67 -1.82 16 2 C 0.07 1.49 4.06 30.97 0.13 1.62 16 3 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.15 -3.24 6.15 31.59 0.19 -3.04 16 5 C 0.05 1.42 3.46 46.22 0.16 1.58 16 6 H 0.05 1.49 7.83 -2.39 -0.02 1.48 16 7 N -0.67 -22.36 5.58 -484.88 -2.70 -25.07 16 8 C 0.09 3.64 4.45 86.30 0.38 4.02 16 9 C 0.06 2.77 0.57 -52.93 -0.03 2.74 16 10 C -0.11 -5.08 8.09 71.98 0.58 -4.49 16 11 C -0.12 -5.58 7.92 71.98 0.57 -5.01 16 12 C -0.53 -28.28 8.01 25.60 0.21 -28.08 16 13 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 14 C 0.02 1.25 5.15 84.66 0.44 1.69 16 15 N -0.90 -50.02 9.35 21.45 0.20 -49.82 16 16 Si 0.94 43.19 29.54 68.60 2.03 45.22 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 C 0.06 1.73 7.41 72.66 0.54 2.27 16 21 O -0.40 -11.14 11.19 -148.98 -1.67 -12.80 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.09 1.87 7.93 -2.38 -0.02 1.85 16 26 H 0.09 1.71 7.70 -2.39 -0.02 1.69 16 27 H 0.35 10.99 6.38 -89.69 -0.57 10.42 16 28 H 0.01 0.42 8.08 -2.38 -0.02 0.40 16 29 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.05 2.57 6.08 -2.39 -0.01 2.55 16 31 H 0.04 1.58 7.60 -2.39 -0.02 1.56 16 32 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.04 1.45 6.57 -2.39 -0.02 1.43 16 35 H 0.06 2.92 6.06 -2.39 -0.01 2.90 16 36 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -57.07 295.17 2.14 -54.93 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.44 Total: 16.06 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 3.84 Total: -28.52 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -2.50 Total: -74.89 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.67 Total: -12.80 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -57.07 2.14 -54.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592368480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.241 kcal (2) G-P(sol) polarization free energy of solvation -57.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds