Wall clock time and date at job start Sun Mar 29 2020 22:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08991 * 110.33324 * 2 1 4 4 C 1.54484 * 110.37447 * 122.25360 * 2 1 3 5 5 C 1.54507 * 104.06332 * 142.80424 * 4 2 1 6 6 H 1.09000 * 110.51333 * 241.21112 * 5 4 2 7 7 N 1.46904 * 110.50795 * 118.64668 * 5 4 2 8 8 C 1.46899 * 111.00029 * 156.90450 * 7 5 4 9 9 C 1.52997 * 109.47254 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.47127 * 300.00134 * 9 8 7 11 11 C 1.52999 * 109.47317 * 59.99645 * 9 8 7 12 12 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 9 8 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46616 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47104 * 119.99966 * 16 14 12 19 19 H 1.48489 * 109.47200 * 240.00246 * 16 14 12 20 20 C 1.54472 * 104.18654 * 359.93208 * 5 4 2 21 21 O 1.44435 * 110.36949 * 237.62916 * 2 1 3 22 22 H 1.09008 * 109.47007 * 297.74701 * 1 2 3 23 23 H 1.09001 * 109.47523 * 57.74611 * 1 2 3 24 24 H 1.09005 * 109.47481 * 177.75441 * 1 2 3 25 25 H 1.09000 * 110.51153 * 24.16016 * 4 2 1 26 26 H 1.09004 * 110.62402 * 261.51052 * 4 2 1 27 27 H 1.00902 * 111.00190 * 32.94150 * 7 5 4 28 28 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 29 29 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 30 30 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 31 31 H 1.09000 * 109.47050 * 179.97438 * 10 9 8 32 32 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 33 33 H 1.09002 * 109.46716 * 60.00091 * 11 9 8 34 34 H 1.09000 * 109.47486 * 180.02562 * 11 9 8 35 35 H 1.09001 * 109.47362 * 300.00732 * 11 9 8 36 36 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.37414 * 94.91811 * 20 5 4 38 38 H 1.08999 * 110.37288 * 217.25405 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0678 -0.7729 1.2247 5 6 3.3177 -1.5051 0.6873 6 1 3.1964 -2.5845 0.7780 7 7 4.5214 -1.0618 1.4033 8 6 5.5833 -2.0738 1.3247 9 6 6.8180 -1.5772 2.0795 10 6 7.3097 -0.2720 1.4503 11 6 6.4551 -1.3316 3.5454 12 6 7.9072 -2.6156 1.9994 13 1 7.7360 -3.5374 1.4633 14 6 9.1225 -2.3884 2.6096 15 7 9.3311 -1.2657 3.2619 16 14 10.4724 -3.6759 2.5109 17 1 9.9893 -4.8403 1.7261 18 1 11.6654 -3.0924 1.8465 19 1 10.8356 -4.1182 3.8811 20 6 3.3889 -1.0913 -0.7992 21 8 2.0327 -0.7249 -1.1436 22 1 -0.3633 0.4785 0.9096 23 1 -0.3634 0.5484 -0.8691 24 1 -0.3634 -1.0269 -0.0403 25 1 1.3276 -1.4904 1.5788 26 1 2.3426 -0.0836 2.0232 27 1 4.3083 -0.8349 2.3631 28 1 5.2329 -3.0037 1.7725 29 1 5.8422 -2.2485 0.2804 30 1 6.5218 0.4788 1.5087 31 1 8.1890 0.0820 1.9884 32 1 7.5683 -0.4470 0.4060 33 1 6.1048 -2.2613 3.9936 34 1 7.3346 -0.9773 4.0831 35 1 5.6671 -0.5807 3.6037 36 1 10.1863 -1.1057 3.6909 37 1 4.0552 -0.2378 -0.9241 38 1 3.7251 -1.9288 -1.4105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592368481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:42 Heat of formation + Delta-G solvation = -56.945184 kcal Electronic energy + Delta-G solvation = -16488.637510 eV Core-core repulsion = 13944.598974 eV Total energy + Delta-G solvation = -2544.038535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.44287 -36.69767 -33.92508 -32.05528 -31.18372 -28.55653 -25.91238 -25.52356 -25.22633 -23.79282 -21.38138 -20.48825 -18.48955 -16.28154 -15.79640 -15.54528 -15.38396 -14.96130 -14.43859 -13.73727 -13.42495 -12.89890 -12.67228 -12.38401 -12.20466 -12.03150 -11.66174 -11.27205 -11.20065 -10.97485 -10.89447 -10.75567 -10.57354 -10.43106 -10.19858 -10.06565 -9.63225 -9.40541 -9.08193 -8.63225 -8.30749 -7.79661 -5.92555 -4.02906 3.29719 3.38213 3.41720 3.98695 4.42866 4.67471 4.72494 4.80316 5.10552 5.26379 5.33170 5.45058 5.48721 5.67925 5.71335 5.88102 5.96551 6.07808 6.08984 6.14418 6.28312 6.39694 6.68951 6.85549 6.93525 7.06523 7.14358 7.35884 7.44986 7.69975 7.74197 7.81308 7.91379 8.18960 8.32696 8.54271 8.98624 9.62317 11.08030 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.058612 B = 0.005524 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.606130 B = 5067.584107 C = 5210.208953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 H 0.069 0.931 4 C -0.152 4.152 5 C 0.052 3.948 6 H 0.051 0.949 7 N -0.677 5.677 8 C 0.074 3.926 9 C 0.068 3.932 10 C -0.119 4.119 11 C -0.132 4.132 12 C -0.506 4.506 13 H 0.052 0.948 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.888 3.112 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.056 3.944 21 O -0.381 6.381 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.340 0.660 28 H 0.014 0.986 29 H 0.056 0.944 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.083 0.917 35 H 0.010 0.990 36 H 0.257 0.743 37 H 0.073 0.927 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 2.023 -3.152 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 H 0.087 0.913 4 C -0.190 4.190 5 C -0.059 4.059 6 H 0.069 0.931 7 N -0.311 5.311 8 C -0.054 4.054 9 C 0.067 3.933 10 C -0.177 4.177 11 C -0.190 4.190 12 C -0.545 4.545 13 H 0.070 0.930 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.717 3.283 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.021 4.021 21 O -0.300 6.300 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.161 0.839 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.102 0.898 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.743 2.421 -3.775 13.509 hybrid contribution 0.642 -1.439 0.788 1.762 sum -12.101 0.982 -2.987 12.503 Atomic orbital electron populations 1.21809 0.93719 1.02653 1.02122 1.22867 0.94613 0.95667 0.85232 0.91308 1.23176 0.97310 0.99822 0.98698 1.22864 0.90287 0.97625 0.95125 0.93082 1.60704 1.06728 1.44221 1.19421 1.22226 0.92115 0.90843 1.00258 1.18107 0.89986 0.94160 0.91030 1.21642 1.00594 0.97122 0.98332 1.21835 1.00181 0.97019 0.99968 1.21142 0.97563 1.02653 1.33134 0.92955 1.24887 0.98178 0.95320 0.95200 1.69846 1.23650 1.23809 1.35045 0.86598 0.82188 0.81916 0.77631 1.19953 1.21091 1.21167 1.23510 0.83601 1.00544 0.94472 1.89106 1.27990 1.74508 1.38384 0.91341 0.92097 0.91988 0.90914 0.89971 0.83935 0.96740 0.92518 0.96147 0.90722 0.96279 0.96214 0.89786 0.97103 0.93243 0.90842 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.52 37.15 0.35 -1.08 16 2 C 0.07 0.92 3.93 -25.96 -0.10 0.82 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.15 -1.89 6.30 -25.16 -0.16 -2.05 16 5 C 0.05 0.78 3.43 -66.15 -0.23 0.55 16 6 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 7 N -0.68 -11.82 5.50 -105.07 -0.58 -12.39 16 8 C 0.07 1.52 4.44 -3.83 -0.02 1.51 16 9 C 0.07 1.62 0.57 -155.66 -0.09 1.53 16 10 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 11 C -0.13 -3.08 7.92 37.16 0.29 -2.79 16 12 C -0.51 -13.56 8.01 -34.44 -0.28 -13.84 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 14 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 15 N -0.88 -24.38 9.35 55.43 0.52 -23.86 16 16 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.06 0.84 7.35 37.93 0.28 1.12 16 21 O -0.38 -5.70 11.35 -35.23 -0.40 -6.10 16 22 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 26 H 0.08 0.98 7.58 -51.93 -0.39 0.59 16 27 H 0.34 5.82 6.16 -39.29 -0.24 5.58 16 28 H 0.01 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 31 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 35 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 36 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 37 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 294.87 15.07 4.44 4.44 Total: -1.00 -27.39 294.87 -7.35 -34.74 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.58 Total: 2.28 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 0.27 Total: -15.15 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.06 Total: -36.25 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.40 Total: -6.10 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.39 -7.35 -34.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592368481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.204 kcal (2) G-P(sol) polarization free energy of solvation -27.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds