Wall clock time and date at job start Sun Mar 29 2020 22:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08991 * 110.33324 * 2 1 4 4 C 1.54484 * 110.37447 * 122.25360 * 2 1 3 5 5 C 1.54507 * 104.06332 * 142.80424 * 4 2 1 6 6 H 1.09000 * 110.51333 * 241.21112 * 5 4 2 7 7 N 1.46904 * 110.50795 * 118.64668 * 5 4 2 8 8 C 1.46899 * 111.00029 * 156.90450 * 7 5 4 9 9 C 1.52997 * 109.47254 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.47127 * 300.00134 * 9 8 7 11 11 C 1.52999 * 109.47317 * 59.99645 * 9 8 7 12 12 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 9 8 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46616 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47104 * 119.99966 * 16 14 12 19 19 H 1.48489 * 109.47200 * 240.00246 * 16 14 12 20 20 C 1.54472 * 104.18654 * 359.93208 * 5 4 2 21 21 O 1.44435 * 110.36949 * 237.62916 * 2 1 3 22 22 H 1.09008 * 109.47007 * 297.74701 * 1 2 3 23 23 H 1.09001 * 109.47523 * 57.74611 * 1 2 3 24 24 H 1.09005 * 109.47481 * 177.75441 * 1 2 3 25 25 H 1.09000 * 110.51153 * 24.16016 * 4 2 1 26 26 H 1.09004 * 110.62402 * 261.51052 * 4 2 1 27 27 H 1.00902 * 111.00190 * 32.94150 * 7 5 4 28 28 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 29 29 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 30 30 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 31 31 H 1.09000 * 109.47050 * 179.97438 * 10 9 8 32 32 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 33 33 H 1.09002 * 109.46716 * 60.00091 * 11 9 8 34 34 H 1.09000 * 109.47486 * 180.02562 * 11 9 8 35 35 H 1.09001 * 109.47362 * 300.00732 * 11 9 8 36 36 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.37414 * 94.91811 * 20 5 4 38 38 H 1.08999 * 110.37288 * 217.25405 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0678 -0.7729 1.2247 5 6 3.3177 -1.5051 0.6873 6 1 3.1964 -2.5845 0.7780 7 7 4.5214 -1.0618 1.4033 8 6 5.5833 -2.0738 1.3247 9 6 6.8180 -1.5772 2.0795 10 6 7.3097 -0.2720 1.4503 11 6 6.4551 -1.3316 3.5454 12 6 7.9072 -2.6156 1.9994 13 1 7.7360 -3.5374 1.4633 14 6 9.1225 -2.3884 2.6096 15 7 9.3311 -1.2657 3.2619 16 14 10.4724 -3.6759 2.5109 17 1 9.9893 -4.8403 1.7261 18 1 11.6654 -3.0924 1.8465 19 1 10.8356 -4.1182 3.8811 20 6 3.3889 -1.0913 -0.7992 21 8 2.0327 -0.7249 -1.1436 22 1 -0.3633 0.4785 0.9096 23 1 -0.3634 0.5484 -0.8691 24 1 -0.3634 -1.0269 -0.0403 25 1 1.3276 -1.4904 1.5788 26 1 2.3426 -0.0836 2.0232 27 1 4.3083 -0.8349 2.3631 28 1 5.2329 -3.0037 1.7725 29 1 5.8422 -2.2485 0.2804 30 1 6.5218 0.4788 1.5087 31 1 8.1890 0.0820 1.9884 32 1 7.5683 -0.4470 0.4060 33 1 6.1048 -2.2613 3.9936 34 1 7.3346 -0.9773 4.0831 35 1 5.6671 -0.5807 3.6037 36 1 10.1863 -1.1057 3.6909 37 1 4.0552 -0.2378 -0.9241 38 1 3.7251 -1.9288 -1.4105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592368481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:42 Heat of formation + Delta-G solvation = -73.610187 kcal Electronic energy + Delta-G solvation = -16489.360158 eV Core-core repulsion = 13944.598974 eV Total energy + Delta-G solvation = -2544.761184 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57943 -38.39032 -35.51846 -33.23826 -32.79831 -29.92497 -27.53406 -27.25621 -26.82695 -25.46086 -22.42694 -21.64659 -20.35518 -17.96083 -17.17056 -16.95233 -16.58389 -16.46479 -15.97248 -15.19670 -14.99771 -14.37673 -14.10686 -13.84324 -13.38157 -13.22037 -13.03253 -12.98469 -12.79687 -12.56470 -12.44674 -12.21003 -12.17396 -12.08093 -11.82771 -11.63726 -11.30975 -10.90669 -10.73424 -10.58325 -10.34612 -9.24580 -7.97010 -6.13684 1.40971 1.44652 1.53698 2.46301 2.92392 3.25353 3.41076 3.60164 3.82342 4.07781 4.28060 4.39491 4.48072 4.56591 4.61955 4.72557 4.78959 4.86060 4.87761 4.95440 5.01929 5.06671 5.12898 5.17844 5.28736 5.30227 5.42722 5.53716 5.70382 5.77158 5.85360 6.16307 6.25870 6.34029 6.49069 6.61761 6.95761 7.54062 9.01252 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.058612 B = 0.005524 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.606130 B = 5067.584107 C = 5210.208953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.067 3.933 3 H 0.069 0.931 4 C -0.145 4.145 5 C 0.050 3.950 6 H 0.049 0.951 7 N -0.675 5.675 8 C 0.089 3.911 9 C 0.058 3.942 10 C -0.106 4.106 11 C -0.121 4.121 12 C -0.526 4.526 13 H 0.044 0.956 14 C 0.023 3.977 15 N -0.903 5.903 16 Si 0.944 3.056 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.282 1.282 20 C 0.058 3.942 21 O -0.394 6.394 22 H 0.089 0.911 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.344 0.656 28 H 0.010 0.990 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.010 0.990 33 H 0.017 0.983 34 H 0.055 0.945 35 H 0.036 0.964 36 H 0.257 0.743 37 H 0.062 0.938 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.352 1.977 -3.051 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.010 3.990 3 H 0.087 0.913 4 C -0.182 4.182 5 C -0.061 4.061 6 H 0.067 0.933 7 N -0.309 5.309 8 C -0.040 4.040 9 C 0.058 3.942 10 C -0.164 4.164 11 C -0.179 4.179 12 C -0.565 4.565 13 H 0.062 0.938 14 C -0.176 4.176 15 N -0.542 5.542 16 Si 0.771 3.229 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.020 4.020 21 O -0.314 6.314 22 H 0.108 0.892 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.165 0.835 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.103 2.379 -3.676 14.767 hybrid contribution 1.029 -1.392 0.739 1.882 sum -13.074 0.987 -2.936 13.436 Atomic orbital electron populations 1.21813 0.91603 1.03015 1.03408 1.23093 0.96318 0.95336 0.84292 0.91285 1.23160 0.96211 1.00036 0.98839 1.22905 0.90322 0.97877 0.94967 0.93259 1.60601 1.07276 1.43193 1.19869 1.21875 0.91832 0.91227 0.99018 1.18163 0.90834 0.93365 0.91883 1.21474 0.99911 0.97703 0.97264 1.21665 0.99679 0.97520 0.99051 1.21458 0.98815 1.03092 1.33087 0.93805 1.25520 1.00049 0.96947 0.95105 1.69972 1.23951 1.24909 1.35373 0.85731 0.79752 0.79888 0.77562 1.19731 1.20964 1.20843 1.23423 0.83815 1.00128 0.94617 1.89102 1.27647 1.74896 1.39720 0.89210 0.91796 0.91987 0.89332 0.89159 0.83500 0.97154 0.93356 0.94599 0.93337 0.97127 0.96379 0.92600 0.94547 0.93337 0.92011 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.52 71.98 0.68 -1.69 16 2 C 0.07 1.51 3.93 31.10 0.12 1.63 16 3 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 4 C -0.14 -3.21 6.30 31.61 0.20 -3.01 16 5 C 0.05 1.41 3.43 45.93 0.16 1.57 16 6 H 0.05 1.44 7.85 -2.39 -0.02 1.42 16 7 N -0.68 -22.49 5.50 -486.35 -2.68 -25.17 16 8 C 0.09 3.62 4.44 86.30 0.38 4.00 16 9 C 0.06 2.76 0.57 -52.93 -0.03 2.73 16 10 C -0.11 -5.09 8.09 71.98 0.58 -4.51 16 11 C -0.12 -5.57 7.92 71.98 0.57 -5.00 16 12 C -0.53 -28.23 8.01 25.60 0.21 -28.02 16 13 H 0.04 2.37 7.74 -2.91 -0.02 2.34 16 14 C 0.02 1.23 5.15 84.65 0.44 1.67 16 15 N -0.90 -50.08 9.35 21.45 0.20 -49.87 16 16 Si 0.94 43.22 29.54 68.60 2.03 45.25 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 C 0.06 1.67 7.35 72.48 0.53 2.21 16 21 O -0.39 -11.19 11.35 -148.98 -1.69 -12.88 16 22 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.09 1.71 7.87 -2.39 -0.02 1.69 16 26 H 0.09 1.88 7.58 -2.39 -0.02 1.86 16 27 H 0.34 10.99 6.16 -89.69 -0.55 10.44 16 28 H 0.01 0.42 8.08 -2.39 -0.02 0.40 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.56 7.60 -2.39 -0.02 1.54 16 31 H 0.05 2.59 6.07 -2.39 -0.01 2.57 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 2.89 6.07 -2.39 -0.01 2.88 16 35 H 0.04 1.44 6.57 -2.39 -0.02 1.42 16 36 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 37 H 0.06 1.93 8.06 -2.39 -0.02 1.91 16 38 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -57.28 294.87 2.17 -55.11 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.46 Total: 16.00 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 3.84 Total: -28.43 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -2.48 Total: -75.04 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -1.69 Total: -12.88 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -57.28 2.17 -55.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592368481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.502 kcal (2) G-P(sol) polarization free energy of solvation -57.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds