Wall clock time and date at job start Sun Mar 29 2020 22:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08993 * 109.89525 * 2 1 4 4 C 1.54374 * 109.83242 * 239.06106 * 2 1 3 5 5 C 1.55307 * 102.25419 * 219.13343 * 4 2 1 6 6 H 1.09003 * 111.12061 * 276.16839 * 5 4 2 7 7 N 1.46902 * 111.12454 * 152.05249 * 5 4 2 8 8 C 1.46905 * 110.99871 * 158.49497 * 7 5 4 9 9 C 1.52992 * 109.46996 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47482 * 60.00113 * 9 8 7 11 11 C 1.53006 * 109.47223 * 299.99825 * 9 8 7 12 12 C 1.50699 * 109.46956 * 180.02562 * 9 8 7 13 13 H 1.08003 * 120.00271 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00161 * 179.97438 * 12 9 8 15 15 N 1.31509 * 119.99895 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00268 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46809 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46948 * 120.00386 * 16 14 12 19 19 H 1.48497 * 109.47378 * 240.00673 * 16 14 12 20 20 C 1.54939 * 100.97836 * 34.11155 * 5 4 2 21 21 O 1.43234 * 109.82551 * 120.92878 * 2 1 3 22 22 H 1.08995 * 109.46744 * 180.93710 * 1 2 3 23 23 H 1.09000 * 109.47016 * 300.94222 * 1 2 3 24 24 H 1.09000 * 109.46342 * 60.93869 * 1 2 3 25 25 H 1.09003 * 110.84949 * 100.93626 * 4 2 1 26 26 H 1.09010 * 111.02390 * 337.40281 * 4 2 1 27 27 H 1.00896 * 111.00180 * 282.45042 * 7 5 4 28 28 H 1.08996 * 109.46646 * 59.99736 * 8 7 5 29 29 H 1.09002 * 109.47085 * 300.00009 * 8 7 5 30 30 H 1.09002 * 109.47153 * 59.99783 * 10 9 8 31 31 H 1.09001 * 109.46832 * 299.99974 * 10 9 8 32 32 H 1.09004 * 109.47261 * 179.97438 * 10 9 8 33 33 H 1.08993 * 109.46955 * 180.02562 * 11 9 8 34 34 H 1.09000 * 109.47050 * 300.00346 * 11 9 8 35 35 H 1.09001 * 109.47002 * 60.00080 * 11 9 8 36 36 H 0.97006 * 120.00358 * 179.97438 * 15 14 12 37 37 H 1.09004 * 110.31359 * 82.49783 * 20 5 4 38 38 H 1.09003 * 110.31034 * 204.66293 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0538 -0.7466 -1.2456 5 6 3.2731 -1.5223 -0.6765 6 1 4.1623 -0.8923 -0.6512 7 7 3.5213 -2.7524 -1.4401 8 6 4.9062 -3.2103 -1.2651 9 6 5.1262 -4.4901 -2.0740 10 6 4.8655 -4.2086 -3.5551 11 6 4.1647 -5.5748 -1.5840 12 6 6.5466 -4.9601 -1.8940 13 1 7.2248 -4.4016 -1.2658 14 6 6.9806 -6.1032 -2.5312 15 7 6.1550 -6.7831 -3.2965 16 14 8.7415 -6.6855 -2.3086 17 1 9.4612 -5.7517 -1.4056 18 1 8.7415 -8.0465 -1.7146 19 1 9.4216 -6.7213 -3.6282 20 6 2.7758 -1.8444 0.7551 21 8 2.0159 -0.6925 1.1558 22 1 -0.3633 -1.0275 0.0168 23 1 -0.3633 0.5284 0.8814 24 1 -0.3632 0.4992 -0.8983 25 1 2.3673 -0.0427 -2.0165 26 1 1.3028 -1.4350 -1.6335 27 1 2.8662 -3.4756 -1.1836 28 1 5.0920 -3.4103 -0.2099 29 1 5.5912 -2.4377 -1.6146 30 1 5.5505 -3.4359 -3.9041 31 1 3.8379 -3.8689 -3.6849 32 1 5.0227 -5.1204 -4.1314 33 1 4.3218 -6.4867 -2.1600 34 1 4.3505 -5.7753 -0.5289 35 1 3.1371 -5.2350 -1.7139 36 1 6.4604 -7.5871 -3.7452 37 1 2.1416 -2.7308 0.7449 38 1 3.6226 -1.9919 1.4255 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592368486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:46 Heat of formation + Delta-G solvation = -58.632707 kcal Electronic energy + Delta-G solvation = -16486.454965 eV Core-core repulsion = 13942.343253 eV Total energy + Delta-G solvation = -2544.111712 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.58783 -36.73305 -33.95200 -32.07819 -31.20160 -28.60787 -25.92875 -25.58575 -25.24015 -23.77791 -21.02763 -20.86268 -18.56371 -16.82844 -16.10282 -15.54449 -15.15943 -14.53651 -14.06962 -13.78597 -13.43217 -13.05453 -12.73305 -12.59172 -12.26837 -12.02039 -11.63471 -11.49941 -11.15834 -11.09398 -10.88959 -10.73864 -10.62577 -10.51084 -10.21034 -10.07840 -9.51329 -9.41304 -9.09925 -8.64578 -8.31195 -7.77353 -5.93042 -4.03479 3.29503 3.38020 3.41439 3.81813 4.42345 4.66405 4.69293 4.95931 5.04420 5.24367 5.28629 5.32730 5.35975 5.59337 5.73927 5.78930 5.94587 6.04978 6.06431 6.25243 6.28102 6.36588 6.67865 6.85820 7.02797 7.06287 7.13534 7.34640 7.43563 7.66848 7.73407 7.80355 7.88065 8.18189 8.31776 8.53404 8.97996 9.61794 11.07552 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.057368 B = 0.005530 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.956966 B = 5062.451712 C = 5218.889062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.073 3.927 3 H 0.076 0.924 4 C -0.141 4.141 5 C 0.056 3.944 6 H 0.090 0.910 7 N -0.671 5.671 8 C 0.074 3.926 9 C 0.068 3.932 10 C -0.119 4.119 11 C -0.133 4.133 12 C -0.506 4.506 13 H 0.052 0.948 14 C 0.065 3.935 15 N -0.884 5.884 16 Si 0.888 3.112 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.022 3.978 21 O -0.383 6.383 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.340 0.660 28 H 0.015 0.985 29 H 0.057 0.943 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.019 0.981 35 H 0.010 0.990 36 H 0.257 0.743 37 H 0.058 0.942 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 9.623 4.204 13.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.094 0.906 4 C -0.179 4.179 5 C -0.056 4.056 6 H 0.108 0.892 7 N -0.303 5.303 8 C -0.054 4.054 9 C 0.067 3.933 10 C -0.177 4.177 11 C -0.191 4.191 12 C -0.545 4.545 13 H 0.071 0.929 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.057 4.057 21 O -0.302 6.302 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.160 0.840 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.038 0.962 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.194 9.846 3.708 13.335 hybrid contribution 1.021 -0.793 0.850 1.547 sum -7.172 9.053 4.559 12.417 Atomic orbital electron populations 1.22130 0.95220 1.02512 1.01923 1.22726 0.94128 0.96254 0.85389 0.90579 1.23145 0.98090 0.99486 0.97160 1.23272 0.98010 0.94292 0.89997 0.89206 1.60588 1.06715 1.05748 1.57254 1.22225 0.86387 0.99160 0.97652 1.18111 0.94561 0.88538 0.92091 1.21644 0.96537 1.00745 0.98793 1.21846 0.95108 1.03079 0.99045 1.21137 0.95807 1.09031 1.28541 0.92930 1.24885 0.97096 0.96519 0.95074 1.69840 1.34313 1.17233 1.30948 0.86599 0.85352 0.78548 0.77832 1.19946 1.21158 1.21094 1.24207 0.94953 0.88790 0.97718 1.88394 1.70975 1.40567 1.30228 0.92229 0.92310 0.91605 0.90037 0.90073 0.83954 0.96651 0.92408 0.96279 0.96131 0.90705 0.89753 0.96153 0.97106 0.93227 0.92342 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.44 37.16 0.35 -1.27 16 2 C 0.07 0.87 4.16 -26.01 -0.11 0.76 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.14 -1.75 6.24 -24.79 -0.15 -1.91 16 5 C 0.06 0.82 3.39 -65.47 -0.22 0.60 16 6 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 7 N -0.67 -11.59 5.61 -104.36 -0.59 -12.18 16 8 C 0.07 1.50 4.47 -3.83 -0.02 1.49 16 9 C 0.07 1.61 0.57 -155.66 -0.09 1.52 16 10 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 11 C -0.13 -3.09 7.92 37.16 0.29 -2.80 16 12 C -0.51 -13.50 8.01 -34.44 -0.28 -13.78 16 13 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 14 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 15 N -0.88 -24.32 9.35 55.43 0.52 -23.80 16 16 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.02 0.31 7.40 38.18 0.28 0.59 16 21 O -0.38 -5.55 11.02 -35.23 -0.39 -5.94 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.02 7.86 -51.92 -0.41 0.61 16 27 H 0.34 5.83 6.28 -39.29 -0.25 5.58 16 28 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 32 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 33 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 36 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.06 0.82 7.76 -51.93 -0.40 0.42 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -27.21 295.21 -7.36 -34.56 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.60 Total: 2.65 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 0.27 Total: -15.72 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.07 Total: -35.98 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.39 Total: -5.94 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.21 -7.36 -34.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592368486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.071 kcal (2) G-P(sol) polarization free energy of solvation -27.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds