Wall clock time and date at job start Sun Mar 29 2020 22:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08993 * 109.89525 * 2 1 4 4 C 1.54374 * 109.83242 * 239.06106 * 2 1 3 5 5 C 1.55307 * 102.25419 * 219.13343 * 4 2 1 6 6 H 1.09003 * 111.12061 * 276.16839 * 5 4 2 7 7 N 1.46902 * 111.12454 * 152.05249 * 5 4 2 8 8 C 1.46905 * 110.99871 * 158.49497 * 7 5 4 9 9 C 1.52992 * 109.46996 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47482 * 60.00113 * 9 8 7 11 11 C 1.53006 * 109.47223 * 299.99825 * 9 8 7 12 12 C 1.50699 * 109.46956 * 180.02562 * 9 8 7 13 13 H 1.08003 * 120.00271 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00161 * 179.97438 * 12 9 8 15 15 N 1.31509 * 119.99895 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00268 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46809 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46948 * 120.00386 * 16 14 12 19 19 H 1.48497 * 109.47378 * 240.00673 * 16 14 12 20 20 C 1.54939 * 100.97836 * 34.11155 * 5 4 2 21 21 O 1.43234 * 109.82551 * 120.92878 * 2 1 3 22 22 H 1.08995 * 109.46744 * 180.93710 * 1 2 3 23 23 H 1.09000 * 109.47016 * 300.94222 * 1 2 3 24 24 H 1.09000 * 109.46342 * 60.93869 * 1 2 3 25 25 H 1.09003 * 110.84949 * 100.93626 * 4 2 1 26 26 H 1.09010 * 111.02390 * 337.40281 * 4 2 1 27 27 H 1.00896 * 111.00180 * 282.45042 * 7 5 4 28 28 H 1.08996 * 109.46646 * 59.99736 * 8 7 5 29 29 H 1.09002 * 109.47085 * 300.00009 * 8 7 5 30 30 H 1.09002 * 109.47153 * 59.99783 * 10 9 8 31 31 H 1.09001 * 109.46832 * 299.99974 * 10 9 8 32 32 H 1.09004 * 109.47261 * 179.97438 * 10 9 8 33 33 H 1.08993 * 109.46955 * 180.02562 * 11 9 8 34 34 H 1.09000 * 109.47050 * 300.00346 * 11 9 8 35 35 H 1.09001 * 109.47002 * 60.00080 * 11 9 8 36 36 H 0.97006 * 120.00358 * 179.97438 * 15 14 12 37 37 H 1.09004 * 110.31359 * 82.49783 * 20 5 4 38 38 H 1.09003 * 110.31034 * 204.66293 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0538 -0.7466 -1.2456 5 6 3.2731 -1.5223 -0.6765 6 1 4.1623 -0.8923 -0.6512 7 7 3.5213 -2.7524 -1.4401 8 6 4.9062 -3.2103 -1.2651 9 6 5.1262 -4.4901 -2.0740 10 6 4.8655 -4.2086 -3.5551 11 6 4.1647 -5.5748 -1.5840 12 6 6.5466 -4.9601 -1.8940 13 1 7.2248 -4.4016 -1.2658 14 6 6.9806 -6.1032 -2.5312 15 7 6.1550 -6.7831 -3.2965 16 14 8.7415 -6.6855 -2.3086 17 1 9.4612 -5.7517 -1.4056 18 1 8.7415 -8.0465 -1.7146 19 1 9.4216 -6.7213 -3.6282 20 6 2.7758 -1.8444 0.7551 21 8 2.0159 -0.6925 1.1558 22 1 -0.3633 -1.0275 0.0168 23 1 -0.3633 0.5284 0.8814 24 1 -0.3632 0.4992 -0.8983 25 1 2.3673 -0.0427 -2.0165 26 1 1.3028 -1.4350 -1.6335 27 1 2.8662 -3.4756 -1.1836 28 1 5.0920 -3.4103 -0.2099 29 1 5.5912 -2.4377 -1.6146 30 1 5.5505 -3.4359 -3.9041 31 1 3.8379 -3.8689 -3.6849 32 1 5.0227 -5.1204 -4.1314 33 1 4.3218 -6.4867 -2.1600 34 1 4.3505 -5.7753 -0.5289 35 1 3.1371 -5.2350 -1.7139 36 1 6.4604 -7.5871 -3.7452 37 1 2.1416 -2.7308 0.7449 38 1 3.6226 -1.9919 1.4255 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592368486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:45 Heat of formation + Delta-G solvation = -75.056963 kcal Electronic energy + Delta-G solvation = -16487.167174 eV Core-core repulsion = 13942.343253 eV Total energy + Delta-G solvation = -2544.823921 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68785 -38.40797 -35.52866 -33.23650 -32.82377 -29.95026 -27.50935 -27.24800 -26.90457 -25.43837 -22.11385 -21.93040 -20.39959 -17.99723 -17.84644 -16.97423 -16.63926 -16.12430 -15.41244 -15.10087 -14.78730 -14.50473 -14.23106 -13.88009 -13.48677 -13.40254 -13.19681 -12.95731 -12.77468 -12.59601 -12.44703 -12.34153 -12.13148 -12.05698 -11.90806 -11.68729 -11.31793 -10.90016 -10.59910 -10.52752 -10.34366 -9.19388 -7.96686 -6.13361 1.41331 1.45051 1.54022 2.46398 2.75711 3.25772 3.46416 3.64147 3.85868 4.02703 4.17009 4.27437 4.47439 4.54035 4.60929 4.70149 4.74087 4.81858 4.87936 4.97481 5.02894 5.10668 5.17370 5.19858 5.28720 5.35191 5.43131 5.54642 5.70737 5.77459 6.02460 6.16068 6.23948 6.33375 6.47862 6.59121 6.96112 7.54424 9.01598 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.057368 B = 0.005530 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.956966 B = 5062.451712 C = 5218.889062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.069 3.931 3 H 0.089 0.911 4 C -0.133 4.133 5 C 0.053 3.947 6 H 0.087 0.913 7 N -0.670 5.670 8 C 0.089 3.911 9 C 0.058 3.942 10 C -0.106 4.106 11 C -0.122 4.122 12 C -0.525 4.525 13 H 0.045 0.955 14 C 0.023 3.977 15 N -0.903 5.903 16 Si 0.944 3.056 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.026 3.974 21 O -0.398 6.398 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.342 0.658 28 H 0.012 0.988 29 H 0.050 0.950 30 H 0.010 0.990 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.017 0.983 35 H 0.034 0.966 36 H 0.257 0.743 37 H 0.060 0.940 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 10.638 4.500 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 H 0.107 0.893 4 C -0.171 4.171 5 C -0.058 4.058 6 H 0.105 0.895 7 N -0.302 5.302 8 C -0.040 4.040 9 C 0.057 3.943 10 C -0.164 4.164 11 C -0.180 4.180 12 C -0.564 4.564 13 H 0.063 0.937 14 C -0.176 4.176 15 N -0.542 5.542 16 Si 0.771 3.229 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.052 4.052 21 O -0.318 6.318 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.162 0.838 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.851 10.874 4.008 14.583 hybrid contribution 1.190 -1.070 0.759 1.771 sum -7.661 9.804 4.767 13.325 Atomic orbital electron populations 1.22114 0.93765 1.02470 1.03094 1.22925 0.95315 0.96439 0.84185 0.89319 1.23111 0.96896 0.99406 0.97651 1.23311 0.98965 0.93142 0.90356 0.89505 1.60517 1.04951 1.06572 1.58138 1.21874 0.88182 0.97268 0.96645 1.18167 0.93408 0.90267 0.92438 1.21477 0.97202 0.99078 0.98651 1.21679 0.96435 1.01665 0.98231 1.21458 0.97294 1.09218 1.28427 0.93713 1.25520 1.00284 0.96796 0.95036 1.69968 1.35549 1.17356 1.31360 0.85734 0.81558 0.78001 0.77651 1.19689 1.20927 1.20950 1.24108 0.94924 0.88974 0.97240 1.88383 1.71112 1.40682 1.31597 0.92844 0.91963 0.89681 0.88940 0.89979 0.83762 0.96950 0.93132 0.97031 0.94551 0.93364 0.92585 0.96341 0.94681 0.93344 0.92229 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.44 71.99 0.68 -2.09 16 2 C 0.07 1.47 4.16 31.06 0.13 1.59 16 3 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.13 -2.97 6.24 31.85 0.20 -2.77 16 5 C 0.05 1.47 3.39 46.37 0.16 1.63 16 6 H 0.09 2.45 7.88 -2.39 -0.02 2.44 16 7 N -0.67 -22.04 5.61 -484.08 -2.72 -24.76 16 8 C 0.09 3.55 4.47 86.30 0.39 3.94 16 9 C 0.06 2.73 0.57 -52.93 -0.03 2.70 16 10 C -0.11 -5.09 8.09 71.98 0.58 -4.50 16 11 C -0.12 -5.62 7.92 71.98 0.57 -5.05 16 12 C -0.53 -28.04 8.01 25.60 0.21 -27.83 16 13 H 0.04 2.40 7.74 -2.91 -0.02 2.37 16 14 C 0.02 1.22 5.15 84.66 0.44 1.65 16 15 N -0.90 -50.01 9.35 21.45 0.20 -49.81 16 16 Si 0.94 43.09 29.54 68.60 2.03 45.12 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 C 0.03 0.70 7.40 72.64 0.54 1.24 16 21 O -0.40 -10.83 11.02 -148.98 -1.64 -12.47 16 22 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.08 1.85 7.86 -2.38 -0.02 1.83 16 27 H 0.34 11.06 6.28 -89.70 -0.56 10.50 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 2.07 8.09 -2.39 -0.02 2.05 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.04 1.57 7.60 -2.39 -0.02 1.55 16 32 H 0.05 2.56 6.07 -2.38 -0.01 2.54 16 33 H 0.06 2.91 6.07 -2.39 -0.01 2.89 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.03 1.39 6.57 -2.39 -0.02 1.38 16 36 H 0.26 13.69 8.31 -92.70 -0.77 12.92 16 37 H 0.06 1.59 7.76 -2.38 -0.02 1.57 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -56.62 295.21 2.17 -54.45 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.45 Total: 16.97 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.85 Total: -29.49 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -2.52 Total: -74.57 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -1.64 Total: -12.47 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -56.62 2.17 -54.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592368486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.607 kcal (2) G-P(sol) polarization free energy of solvation -56.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds