Wall clock time and date at job start Sun Mar 29 2020 21:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47327 * 2 1 4 4 C 1.53001 * 109.47192 * 119.99630 * 2 1 3 5 5 H 1.09007 * 109.47123 * 60.00213 * 4 2 1 6 6 O 1.42891 * 109.47400 * 299.99957 * 4 2 1 7 7 C 1.53002 * 109.46938 * 179.97438 * 4 2 1 8 8 C 1.52997 * 115.55465 * 325.58839 * 7 4 2 9 9 N 1.46899 * 109.47254 * 179.97438 * 8 7 4 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.46800 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00575 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99722 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99924 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00036 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47032 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47236 * 120.00183 * 15 13 11 18 18 H 1.48500 * 109.46924 * 239.99946 * 15 13 11 19 19 C 1.53009 * 117.49328 * 111.26075 * 7 4 2 20 20 C 1.53003 * 117.49495 * 179.91520 * 7 4 2 21 21 H 1.09003 * 109.46848 * 299.99827 * 1 2 3 22 22 H 1.08996 * 109.47278 * 59.99748 * 1 2 3 23 23 H 1.09007 * 109.46912 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47002 * 239.99640 * 2 1 3 25 25 H 1.08996 * 109.47102 * 59.99594 * 3 2 1 26 26 H 1.09003 * 109.47589 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46673 * 300.00232 * 3 2 1 28 28 H 0.96697 * 114.00259 * 299.99808 * 6 4 2 29 29 H 1.09002 * 109.47153 * 59.99623 * 8 7 4 30 30 H 1.09001 * 109.46832 * 299.99814 * 8 7 4 31 31 H 1.00908 * 110.99847 * 56.04959 * 9 8 7 32 32 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 33 33 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 34 34 H 0.96998 * 120.00185 * 179.97438 * 14 13 11 35 35 H 1.09008 * 117.49328 * 215.00321 * 19 7 4 36 36 H 1.08991 * 117.49745 * 0.02562 * 19 7 4 37 37 H 1.08997 * 117.50545 * 359.97438 * 20 7 4 38 38 H 1.08997 * 117.49802 * 145.00789 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 8 1.5637 -0.0475 2.4160 7 6 3.5700 -0.7217 1.2489 8 6 4.2296 -0.8284 -0.1275 9 7 5.6904 -0.8163 0.0273 10 6 6.3588 -0.9180 -1.2769 11 6 7.8526 -0.9031 -1.0782 12 1 8.2642 -0.8262 -0.0827 13 6 8.6938 -0.9876 -2.1674 14 7 8.1925 -1.0817 -3.3796 15 14 10.5454 -0.9698 -1.9211 16 1 10.8509 -0.8577 -0.4722 17 1 11.1278 -2.2273 -2.4545 18 1 11.1293 0.1904 -2.6409 19 6 4.2769 0.1277 2.3072 20 6 4.2764 -1.3985 2.4253 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1301 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.8491 0.8740 2.4821 29 1 3.9229 0.0166 -0.7439 30 1 3.9223 -1.7580 -0.6065 31 1 5.9944 -1.5520 0.6474 32 1 6.0666 -1.8486 -1.7633 33 1 6.0665 -0.0740 -1.9017 34 1 8.7842 -1.1408 -4.1459 35 1 5.2120 0.6105 2.0228 36 1 3.6520 0.6863 3.0039 37 1 3.6513 -1.8431 3.1996 38 1 5.2112 -1.9198 2.2186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592432582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:01 Heat of formation + Delta-G solvation = -39.763718 kcal Electronic energy + Delta-G solvation = -16425.678469 eV Core-core repulsion = 13882.384978 eV Total energy + Delta-G solvation = -2543.293491 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.73602 -36.22151 -34.22457 -33.70007 -32.03572 -27.98258 -27.14359 -26.65736 -23.99355 -22.14906 -21.38668 -20.46014 -18.72655 -16.75276 -16.38134 -15.91551 -15.37161 -14.64951 -14.43689 -14.34177 -13.43183 -13.18850 -12.70664 -12.57371 -12.27906 -12.06247 -11.82956 -11.65341 -11.34787 -11.12550 -10.97551 -10.87367 -10.80804 -10.70514 -10.53345 -10.26843 -9.90116 -9.59154 -9.29264 -9.14054 -8.49391 -7.29555 -6.04876 -4.06823 3.29873 3.37183 3.42258 4.02007 4.37986 4.42848 4.75270 4.86702 4.97102 5.17909 5.22762 5.29270 5.31386 5.35897 5.64014 5.68407 5.69073 5.76217 5.90457 5.99468 6.04113 6.13187 6.21736 6.24278 6.29288 6.36556 6.41168 6.53717 6.65929 7.23940 7.40530 7.64537 7.77395 8.11444 8.37068 8.59682 9.02745 9.58357 11.06333 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041942 B = 0.005678 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.436223 B = 4929.832778 C = 5323.060054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C -0.156 4.156 4 C 0.151 3.849 5 H 0.096 0.904 6 O -0.560 6.560 7 C -0.161 4.161 8 C 0.092 3.908 9 N -0.688 5.688 10 C 0.194 3.806 11 C -0.513 4.513 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.156 4.156 20 C -0.169 4.169 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.371 0.629 29 H 0.075 0.925 30 H 0.020 0.980 31 H 0.327 0.673 32 H -0.015 1.015 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.926 2.231 8.324 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C -0.213 4.213 4 C 0.092 3.908 5 H 0.114 0.886 6 O -0.367 6.367 7 C -0.161 4.161 8 C -0.038 4.038 9 N -0.320 5.320 10 C 0.067 3.933 11 C -0.552 4.552 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.193 4.193 20 C -0.207 4.207 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.220 0.780 29 H 0.094 0.906 30 H 0.038 0.962 31 H 0.145 0.855 32 H 0.003 0.997 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.098 2.332 8.256 15.657 hybrid contribution 1.151 -0.479 -0.501 1.344 sum -11.947 1.853 7.755 14.363 Atomic orbital electron populations 1.21757 0.94993 1.01551 1.01615 1.21774 0.96061 0.97519 0.99218 1.21954 1.02692 0.95307 1.01319 1.21306 0.89654 0.95791 0.84087 0.88609 1.86522 1.76698 1.29169 1.44330 1.22372 0.93916 1.07391 0.92465 1.21438 0.90093 0.99605 0.92669 1.60752 1.02603 1.52310 1.16342 1.19542 0.93605 0.95393 0.84739 1.21216 0.90801 1.49803 0.93343 0.91957 1.24994 0.99168 0.95334 0.95097 1.69972 1.35040 1.50696 0.98062 0.86432 0.85134 0.77505 0.78289 1.19654 1.21093 1.20988 1.22955 1.02760 0.93504 1.00074 1.22931 1.02081 0.96027 0.99613 0.92302 0.92977 0.93019 0.90041 0.93110 0.90778 0.92673 0.77957 0.90645 0.96220 0.85490 0.99693 0.95463 0.92964 0.87132 0.89736 0.89448 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.05 37.16 0.34 -1.12 16 2 C -0.13 -1.47 2.25 -90.62 -0.20 -1.68 16 3 C -0.16 -1.77 8.29 37.16 0.31 -1.46 16 4 C 0.15 1.87 3.04 -26.73 -0.08 1.79 16 5 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 6 O -0.56 -6.74 11.78 -35.23 -0.42 -7.15 16 7 C -0.16 -2.28 1.56 -154.50 -0.24 -2.52 16 8 C 0.09 1.60 4.50 -3.83 -0.02 1.58 16 9 N -0.69 -14.47 5.40 -115.06 -0.62 -15.09 16 10 C 0.19 5.07 5.44 -4.98 -0.03 5.04 16 11 C -0.51 -14.53 9.32 -34.44 -0.32 -14.85 16 12 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 15 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.16 -2.16 9.13 -26.69 -0.24 -2.41 16 20 C -0.17 -2.40 9.54 -26.69 -0.25 -2.65 16 21 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.03 6.96 -51.93 -0.36 0.67 16 25 H 0.05 0.50 6.78 -51.93 -0.35 0.15 16 26 H 0.07 0.98 5.64 -51.93 -0.29 0.69 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.37 3.72 5.85 45.56 0.27 3.99 16 29 H 0.08 1.33 5.33 -51.93 -0.28 1.05 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.33 6.70 6.61 -39.29 -0.26 6.44 16 32 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 35 H 0.11 1.77 7.58 -51.92 -0.39 1.38 16 36 H 0.08 1.01 6.38 -51.93 -0.33 0.68 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.10 1.43 6.35 -51.93 -0.33 1.11 16 LS Contribution 295.33 15.07 4.45 4.45 Total: -1.00 -29.53 295.33 -7.37 -36.90 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.66 Total: 7.16 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -0.84 Total: -16.78 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.11 Total: -41.26 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.42 Total: -7.15 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.53 -7.37 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592432582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.863 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds