Wall clock time and date at job start Sun Mar 29 2020 21:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47327 * 2 1 4 4 C 1.53001 * 109.47192 * 119.99630 * 2 1 3 5 5 H 1.09007 * 109.47123 * 60.00213 * 4 2 1 6 6 O 1.42891 * 109.47400 * 299.99957 * 4 2 1 7 7 C 1.53002 * 109.46938 * 179.97438 * 4 2 1 8 8 C 1.52997 * 115.55465 * 325.58839 * 7 4 2 9 9 N 1.46899 * 109.47254 * 179.97438 * 8 7 4 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.46800 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00575 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99722 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99924 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00036 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47032 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47236 * 120.00183 * 15 13 11 18 18 H 1.48500 * 109.46924 * 239.99946 * 15 13 11 19 19 C 1.53009 * 117.49328 * 111.26075 * 7 4 2 20 20 C 1.53003 * 117.49495 * 179.91520 * 7 4 2 21 21 H 1.09003 * 109.46848 * 299.99827 * 1 2 3 22 22 H 1.08996 * 109.47278 * 59.99748 * 1 2 3 23 23 H 1.09007 * 109.46912 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47002 * 239.99640 * 2 1 3 25 25 H 1.08996 * 109.47102 * 59.99594 * 3 2 1 26 26 H 1.09003 * 109.47589 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46673 * 300.00232 * 3 2 1 28 28 H 0.96697 * 114.00259 * 299.99808 * 6 4 2 29 29 H 1.09002 * 109.47153 * 59.99623 * 8 7 4 30 30 H 1.09001 * 109.46832 * 299.99814 * 8 7 4 31 31 H 1.00908 * 110.99847 * 56.04959 * 9 8 7 32 32 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 33 33 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 34 34 H 0.96998 * 120.00185 * 179.97438 * 14 13 11 35 35 H 1.09008 * 117.49328 * 215.00321 * 19 7 4 36 36 H 1.08991 * 117.49745 * 0.02562 * 19 7 4 37 37 H 1.08997 * 117.50545 * 359.97438 * 20 7 4 38 38 H 1.08997 * 117.49802 * 145.00789 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 8 1.5637 -0.0475 2.4160 7 6 3.5700 -0.7217 1.2489 8 6 4.2296 -0.8284 -0.1275 9 7 5.6904 -0.8163 0.0273 10 6 6.3588 -0.9180 -1.2769 11 6 7.8526 -0.9031 -1.0782 12 1 8.2642 -0.8262 -0.0827 13 6 8.6938 -0.9876 -2.1674 14 7 8.1925 -1.0817 -3.3796 15 14 10.5454 -0.9698 -1.9211 16 1 10.8509 -0.8577 -0.4722 17 1 11.1278 -2.2273 -2.4545 18 1 11.1293 0.1904 -2.6409 19 6 4.2769 0.1277 2.3072 20 6 4.2764 -1.3985 2.4253 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1301 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.8491 0.8740 2.4821 29 1 3.9229 0.0166 -0.7439 30 1 3.9223 -1.7580 -0.6065 31 1 5.9944 -1.5520 0.6474 32 1 6.0666 -1.8486 -1.7633 33 1 6.0665 -0.0740 -1.9017 34 1 8.7842 -1.1408 -4.1459 35 1 5.2120 0.6105 2.0228 36 1 3.6520 0.6863 3.0039 37 1 3.6513 -1.8431 3.1996 38 1 5.2112 -1.9198 2.2186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592432582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:01 Heat of formation + Delta-G solvation = -59.735610 kcal Electronic energy + Delta-G solvation = -16426.544515 eV Core-core repulsion = 13882.384978 eV Total energy + Delta-G solvation = -2544.159537 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85366 -37.53649 -35.79347 -34.85576 -33.96787 -29.57255 -28.14822 -28.03815 -25.63602 -23.56825 -23.07060 -21.45862 -19.94684 -18.57774 -17.64955 -17.11983 -16.75654 -16.38048 -15.97175 -15.57936 -14.71861 -14.57168 -14.36946 -13.90982 -13.52041 -13.35018 -13.08702 -12.89588 -12.79659 -12.70328 -12.64284 -12.23311 -12.10146 -12.01447 -11.75228 -11.61033 -11.46529 -11.14313 -10.78065 -10.64511 -10.38610 -9.11661 -8.24512 -6.35775 1.40271 1.40863 1.54859 2.38693 2.86543 3.09078 3.36403 3.57075 3.78979 3.92535 4.00692 4.05528 4.18407 4.28509 4.40862 4.66082 4.73369 4.81424 4.86982 4.91558 4.92364 5.03184 5.03620 5.11019 5.18737 5.21620 5.24554 5.27096 5.46501 5.48867 5.49406 5.60185 6.00322 6.41690 6.69835 6.78551 6.86432 7.35489 8.87463 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041942 B = 0.005678 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.436223 B = 4929.832778 C = 5323.060054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C -0.153 4.153 4 C 0.161 3.839 5 H 0.097 0.903 6 O -0.560 6.560 7 C -0.158 4.158 8 C 0.094 3.906 9 N -0.682 5.682 10 C 0.209 3.791 11 C -0.534 4.534 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.974 3.026 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.278 1.278 19 C -0.148 4.148 20 C -0.169 4.169 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.381 0.619 29 H 0.072 0.928 30 H 0.012 0.988 31 H 0.332 0.668 32 H -0.042 1.042 33 H 0.000 1.000 34 H 0.265 0.735 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.190 2.587 9.748 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C -0.210 4.210 4 C 0.102 3.898 5 H 0.115 0.885 6 O -0.368 6.368 7 C -0.158 4.158 8 C -0.035 4.035 9 N -0.314 5.314 10 C 0.081 3.919 11 C -0.572 4.572 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.798 3.202 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.185 4.185 20 C -0.206 4.206 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.232 0.768 29 H 0.090 0.910 30 H 0.030 0.970 31 H 0.150 0.850 32 H -0.025 1.025 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.379 2.694 9.702 16.744 hybrid contribution 1.184 -0.577 -0.947 1.622 sum -12.194 2.117 8.755 15.160 Atomic orbital electron populations 1.21712 0.93578 1.01937 1.02182 1.21744 0.97186 0.97358 0.98201 1.21913 1.01143 0.95444 1.02474 1.21168 0.87882 0.96129 0.84667 0.88542 1.86518 1.76474 1.29992 1.43843 1.22249 0.95101 1.08086 0.90405 1.21449 0.87925 0.99076 0.95091 1.60635 1.04655 1.52371 1.13703 1.19187 0.93556 0.92748 0.86419 1.21554 0.91932 1.50124 0.93610 0.91789 1.25960 1.04565 0.94539 0.94638 1.70097 1.37094 1.51271 0.99037 0.85268 0.78492 0.77767 0.78666 1.18647 1.20309 1.20333 1.22927 1.02068 0.93443 1.00063 1.22961 1.01730 0.96205 0.99752 0.91795 0.92322 0.92766 0.91597 0.91173 0.93032 0.92376 0.76809 0.90992 0.96982 0.84981 1.02479 0.98168 0.92593 0.89416 0.87108 0.87850 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.05 71.98 0.65 -1.89 16 2 C -0.13 -2.77 2.25 -10.79 -0.02 -2.80 16 3 C -0.15 -3.28 8.29 71.98 0.60 -2.69 16 4 C 0.16 3.72 3.04 30.60 0.09 3.81 16 5 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 6 O -0.56 -11.82 11.78 -148.98 -1.76 -13.57 16 7 C -0.16 -4.33 1.56 -52.18 -0.08 -4.41 16 8 C 0.09 3.34 4.50 86.30 0.39 3.73 16 9 N -0.68 -29.38 5.40 -517.93 -2.80 -32.18 16 10 C 0.21 11.33 5.44 85.55 0.47 11.80 16 11 C -0.53 -30.72 9.32 25.60 0.24 -30.48 16 12 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 13 C 0.00 0.06 5.46 84.66 0.46 0.53 16 14 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 15 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 16 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 C -0.15 -3.89 9.13 30.62 0.28 -3.61 16 20 C -0.17 -4.56 9.54 30.62 0.29 -4.27 16 21 H 0.06 1.13 7.68 -2.39 -0.02 1.11 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.07 1.65 6.96 -2.39 -0.02 1.64 16 25 H 0.07 1.21 6.78 -2.39 -0.02 1.20 16 26 H 0.05 1.35 5.64 -2.39 -0.01 1.33 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.38 6.37 5.85 -74.06 -0.43 5.94 16 29 H 0.07 2.61 5.33 -2.39 -0.01 2.60 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.33 13.81 6.61 -89.69 -0.59 13.22 16 32 H -0.04 -2.49 8.14 -2.39 -0.02 -2.51 16 33 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.09 2.76 7.58 -2.38 -0.02 2.74 16 36 H 0.11 2.32 6.38 -2.39 -0.02 2.31 16 37 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.08 2.43 6.35 -2.39 -0.02 2.42 16 Total: -1.00 -63.16 295.33 1.14 -62.02 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.02 Total: 24.09 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 3.36 Total: -30.27 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -2.51 Total: -88.77 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -1.76 Total: -13.57 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -63.16 1.14 -62.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592432582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.283 kcal (2) G-P(sol) polarization free energy of solvation -63.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds