Wall clock time and date at job start Sun Mar 29 2020 21:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47176 * 2 1 4 4 C 1.53001 * 109.47117 * 119.99749 * 2 1 3 5 5 H 1.08998 * 109.46812 * 300.00309 * 4 2 1 6 6 O 1.42896 * 109.46911 * 60.00024 * 4 2 1 7 7 C 1.52996 * 109.46908 * 180.02562 * 4 2 1 8 8 C 1.52993 * 115.55307 * 325.57926 * 7 4 2 9 9 N 1.46906 * 109.47378 * 180.02562 * 8 7 4 10 10 C 1.46898 * 110.99888 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47041 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00078 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99811 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99787 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47259 * 90.00455 * 15 13 11 17 17 H 1.48506 * 109.46535 * 210.00186 * 15 13 11 18 18 H 1.48501 * 109.46813 * 329.99840 * 15 13 11 19 19 C 1.53000 * 117.49896 * 111.25317 * 7 4 2 20 20 C 1.53011 * 117.49681 * 179.91222 * 7 4 2 21 21 H 1.08998 * 109.47532 * 300.00383 * 1 2 3 22 22 H 1.09002 * 109.47110 * 60.00414 * 1 2 3 23 23 H 1.09004 * 109.46989 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47532 * 239.99617 * 2 1 3 25 25 H 1.08998 * 109.47203 * 59.99416 * 3 2 1 26 26 H 1.08997 * 109.47480 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46763 * 299.99798 * 3 2 1 28 28 H 0.96701 * 113.99728 * 60.00481 * 6 4 2 29 29 H 1.09004 * 109.46862 * 60.00319 * 8 7 4 30 30 H 1.09000 * 109.47250 * 300.00342 * 8 7 4 31 31 H 1.00904 * 110.99860 * 56.05050 * 9 8 7 32 32 H 1.08997 * 109.47334 * 299.99788 * 10 9 8 33 33 H 1.08995 * 109.47296 * 60.00089 * 10 9 8 34 34 H 0.97002 * 119.99396 * 180.02562 * 14 13 11 35 35 H 1.09004 * 117.49987 * 214.99678 * 19 7 4 36 36 H 1.09001 * 117.50174 * 0.02643 * 19 7 4 37 37 H 1.09002 * 117.49524 * 359.97438 * 20 7 4 38 38 H 1.08997 * 117.49704 * 144.97137 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 8 1.5636 -2.0684 1.2493 7 6 3.5699 -0.7206 1.2496 8 6 4.2301 -0.8266 -0.1265 9 7 5.6909 -0.8147 0.0289 10 6 6.3599 -0.9145 -1.2751 11 6 7.8536 -0.8986 -1.0759 12 1 8.2648 -0.8224 -0.0802 13 6 8.6952 -0.9824 -2.1648 14 7 8.1945 -1.0757 -3.3772 15 14 10.5468 -0.9634 -1.9177 16 1 11.0374 -2.3543 -1.7450 17 1 11.1981 -0.3525 -3.1043 18 1 10.8765 -0.1681 -0.7077 19 6 4.2759 0.1290 2.3082 20 6 4.2764 -1.3973 2.4261 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.6766 1.9564 0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.8490 -2.5865 0.4843 29 1 3.9231 0.0184 -0.7428 30 1 3.9237 -1.7563 -0.6059 31 1 5.9946 -1.5507 0.6487 32 1 6.0679 -1.8444 -1.7630 33 1 6.0679 -0.0697 -1.8989 34 1 8.7866 -1.1350 -4.1432 35 1 5.2107 0.6124 2.0243 36 1 3.6503 0.6871 3.0048 37 1 3.6511 -1.8425 3.2000 38 1 5.2113 -1.9183 2.2195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592432778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:03 Heat of formation + Delta-G solvation = -42.194683 kcal Electronic energy + Delta-G solvation = -16394.585698 eV Core-core repulsion = 13851.186793 eV Total energy + Delta-G solvation = -2543.398905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.53022 -36.20419 -34.15697 -34.08007 -32.10964 -27.93743 -26.97176 -26.27243 -24.16644 -22.08354 -21.44081 -20.68980 -18.87509 -16.65502 -16.23158 -15.72779 -15.32011 -14.70345 -14.43656 -14.08499 -13.63247 -13.08612 -12.76451 -12.57328 -12.36858 -12.09887 -11.93126 -11.65308 -11.33763 -11.11629 -11.04016 -10.88465 -10.78420 -10.72940 -10.43879 -10.24479 -9.87673 -9.49902 -9.40603 -9.16387 -8.49563 -7.30709 -6.05126 -4.07171 3.30604 3.36722 3.41276 3.96118 4.41316 4.54833 4.65593 4.88691 5.00006 5.16390 5.19503 5.31030 5.33839 5.38904 5.59982 5.66927 5.72878 5.78410 5.89077 5.99784 6.06476 6.11695 6.19669 6.24302 6.29686 6.37642 6.40818 6.55821 6.65068 7.22814 7.39518 7.69948 7.76612 8.10951 8.36315 8.58799 9.02021 9.57996 11.06021 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038690 B = 0.005745 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.527434 B = 4872.506763 C = 5160.807158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C -0.150 4.150 4 C 0.152 3.848 5 H 0.093 0.907 6 O -0.561 6.561 7 C -0.163 4.163 8 C 0.091 3.909 9 N -0.688 5.688 10 C 0.194 3.806 11 C -0.514 4.514 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.153 4.153 20 C -0.166 4.166 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.374 0.626 29 H 0.076 0.924 30 H 0.016 0.984 31 H 0.327 0.673 32 H -0.015 1.015 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.861 1.440 7.918 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C -0.207 4.207 4 C 0.093 3.907 5 H 0.111 0.889 6 O -0.366 6.366 7 C -0.164 4.164 8 C -0.039 4.039 9 N -0.320 5.320 10 C 0.068 3.932 11 C -0.553 4.553 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.190 4.190 20 C -0.203 4.203 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.221 0.779 29 H 0.094 0.906 30 H 0.034 0.966 31 H 0.145 0.855 32 H 0.003 0.997 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.034 2.319 8.294 15.622 hybrid contribution 1.148 -1.069 -0.844 1.782 sum -11.886 1.249 7.450 14.083 Atomic orbital electron populations 1.21764 0.95016 1.01915 1.01234 1.21794 0.96058 0.97636 0.99008 1.21886 1.02714 0.94848 1.01287 1.21445 0.89326 0.82325 0.97608 0.88873 1.86507 1.76574 1.23787 1.49781 1.22316 0.94025 1.07551 0.92481 1.21459 0.90202 0.99358 0.92847 1.60728 1.02561 1.52290 1.16394 1.19534 0.93599 0.95367 0.84717 1.21175 0.90796 1.49974 0.93315 0.92009 1.24990 0.99168 0.95312 0.95088 1.69964 1.35145 1.50588 0.98067 0.86485 0.85025 0.78120 0.77702 1.20726 1.21229 1.19759 1.22971 1.02956 0.93306 0.99742 1.22880 1.01964 0.95873 0.99573 0.93041 0.92974 0.92300 0.90639 0.92991 0.90823 0.92851 0.77902 0.90632 0.96561 0.85472 0.99731 0.95470 0.92907 0.86971 0.90032 0.89416 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.05 37.16 0.34 -1.14 16 2 C -0.13 -1.48 2.14 -90.62 -0.19 -1.67 16 3 C -0.15 -1.78 8.60 37.16 0.32 -1.46 16 4 C 0.15 1.90 2.66 -26.73 -0.07 1.82 16 5 H 0.09 1.15 7.90 -51.93 -0.41 0.74 16 6 O -0.56 -7.15 12.58 -35.23 -0.44 -7.60 16 7 C -0.16 -2.30 1.22 -154.51 -0.19 -2.49 16 8 C 0.09 1.57 4.50 -3.82 -0.02 1.55 16 9 N -0.69 -14.40 5.40 -115.06 -0.62 -15.02 16 10 C 0.19 5.07 5.44 -4.97 -0.03 5.04 16 11 C -0.51 -14.53 9.32 -34.44 -0.32 -14.85 16 12 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 15 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.15 -2.15 9.56 -26.69 -0.26 -2.40 16 20 C -0.17 -2.33 9.51 -26.68 -0.25 -2.59 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 24 H 0.08 0.95 6.97 -51.93 -0.36 0.58 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.01 5.63 -51.93 -0.29 0.72 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.37 4.02 9.05 45.56 0.41 4.43 16 29 H 0.08 1.33 5.33 -51.93 -0.28 1.05 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.33 6.66 6.61 -39.29 -0.26 6.40 16 32 H -0.02 -0.42 8.14 -51.93 -0.42 -0.84 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.11 1.81 7.58 -51.93 -0.39 1.42 16 36 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.10 1.44 6.35 -51.93 -0.33 1.11 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -29.60 301.97 -7.22 -36.82 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.66 Total: 7.38 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -0.77 Total: -16.68 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.11 Total: -41.13 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.44 Total: -7.60 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.60 -7.22 -36.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592432778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.374 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds