Wall clock time and date at job start Sun Mar 29 2020 21:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47176 * 2 1 4 4 C 1.53001 * 109.47117 * 119.99749 * 2 1 3 5 5 H 1.08998 * 109.46812 * 300.00309 * 4 2 1 6 6 O 1.42896 * 109.46911 * 60.00024 * 4 2 1 7 7 C 1.52996 * 109.46908 * 180.02562 * 4 2 1 8 8 C 1.52993 * 115.55307 * 325.57926 * 7 4 2 9 9 N 1.46906 * 109.47378 * 180.02562 * 8 7 4 10 10 C 1.46898 * 110.99888 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47041 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00078 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99811 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99787 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47259 * 90.00455 * 15 13 11 17 17 H 1.48506 * 109.46535 * 210.00186 * 15 13 11 18 18 H 1.48501 * 109.46813 * 329.99840 * 15 13 11 19 19 C 1.53000 * 117.49896 * 111.25317 * 7 4 2 20 20 C 1.53011 * 117.49681 * 179.91222 * 7 4 2 21 21 H 1.08998 * 109.47532 * 300.00383 * 1 2 3 22 22 H 1.09002 * 109.47110 * 60.00414 * 1 2 3 23 23 H 1.09004 * 109.46989 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47532 * 239.99617 * 2 1 3 25 25 H 1.08998 * 109.47203 * 59.99416 * 3 2 1 26 26 H 1.08997 * 109.47480 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46763 * 299.99798 * 3 2 1 28 28 H 0.96701 * 113.99728 * 60.00481 * 6 4 2 29 29 H 1.09004 * 109.46862 * 60.00319 * 8 7 4 30 30 H 1.09000 * 109.47250 * 300.00342 * 8 7 4 31 31 H 1.00904 * 110.99860 * 56.05050 * 9 8 7 32 32 H 1.08997 * 109.47334 * 299.99788 * 10 9 8 33 33 H 1.08995 * 109.47296 * 60.00089 * 10 9 8 34 34 H 0.97002 * 119.99396 * 180.02562 * 14 13 11 35 35 H 1.09004 * 117.49987 * 214.99678 * 19 7 4 36 36 H 1.09001 * 117.50174 * 0.02643 * 19 7 4 37 37 H 1.09002 * 117.49524 * 359.97438 * 20 7 4 38 38 H 1.08997 * 117.49704 * 144.97137 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 8 1.5636 -2.0684 1.2493 7 6 3.5699 -0.7206 1.2496 8 6 4.2301 -0.8266 -0.1265 9 7 5.6909 -0.8147 0.0289 10 6 6.3599 -0.9145 -1.2751 11 6 7.8536 -0.8986 -1.0759 12 1 8.2648 -0.8224 -0.0802 13 6 8.6952 -0.9824 -2.1648 14 7 8.1945 -1.0757 -3.3772 15 14 10.5468 -0.9634 -1.9177 16 1 11.0374 -2.3543 -1.7450 17 1 11.1981 -0.3525 -3.1043 18 1 10.8765 -0.1681 -0.7077 19 6 4.2759 0.1290 2.3082 20 6 4.2764 -1.3973 2.4261 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.6766 1.9564 0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.8490 -2.5865 0.4843 29 1 3.9231 0.0184 -0.7428 30 1 3.9237 -1.7563 -0.6059 31 1 5.9946 -1.5507 0.6487 32 1 6.0679 -1.8444 -1.7630 33 1 6.0679 -0.0697 -1.8989 34 1 8.7866 -1.1350 -4.1432 35 1 5.2107 0.6124 2.0243 36 1 3.6503 0.6871 3.0048 37 1 3.6511 -1.8425 3.2000 38 1 5.2113 -1.9183 2.2195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592432778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:02 Heat of formation + Delta-G solvation = -62.653089 kcal Electronic energy + Delta-G solvation = -16395.472841 eV Core-core repulsion = 13851.186793 eV Total energy + Delta-G solvation = -2544.286048 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67082 -37.46979 -35.87426 -35.05749 -34.11059 -29.56681 -28.21938 -27.36810 -25.81504 -23.50033 -23.13840 -21.65716 -20.12876 -18.56559 -17.46987 -16.99465 -16.69409 -16.35405 -16.01145 -15.30606 -14.82285 -14.57038 -14.36560 -13.89244 -13.67443 -13.33196 -13.17184 -12.92524 -12.83407 -12.69962 -12.66711 -12.23162 -12.17474 -11.99281 -11.79420 -11.52598 -11.43839 -11.11344 -10.76545 -10.60791 -10.47143 -9.11066 -8.24292 -6.35570 1.40394 1.41951 1.53800 2.38823 2.83242 3.09293 3.49577 3.55286 3.65761 3.93154 4.01295 4.08481 4.18296 4.28980 4.43297 4.65793 4.74554 4.81951 4.86892 4.89139 4.92486 5.02220 5.03702 5.13788 5.15080 5.20914 5.26032 5.28706 5.44637 5.48148 5.51601 5.60165 6.00556 6.42438 6.70100 6.77795 6.86514 7.35671 8.87386 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038690 B = 0.005745 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.527434 B = 4872.506763 C = 5160.807158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C -0.147 4.147 4 C 0.161 3.839 5 H 0.105 0.895 6 O -0.567 6.567 7 C -0.159 4.159 8 C 0.093 3.907 9 N -0.683 5.683 10 C 0.210 3.790 11 C -0.535 4.535 12 H 0.064 0.936 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.973 3.027 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.265 1.265 19 C -0.149 4.149 20 C -0.163 4.163 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.381 0.619 29 H 0.070 0.930 30 H 0.014 0.986 31 H 0.332 0.668 32 H -0.042 1.042 33 H -0.001 1.001 34 H 0.265 0.735 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.153 1.612 9.265 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C -0.205 4.205 4 C 0.102 3.898 5 H 0.122 0.878 6 O -0.373 6.373 7 C -0.160 4.160 8 C -0.036 4.036 9 N -0.315 5.315 10 C 0.082 3.918 11 C -0.574 4.574 12 H 0.082 0.918 13 C -0.196 4.196 14 N -0.574 5.574 15 Si 0.797 3.203 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.189 1.189 19 C -0.186 4.186 20 C -0.200 4.200 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.230 0.770 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.151 0.849 32 H -0.024 1.024 33 H 0.017 0.983 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.343 2.484 9.658 16.658 hybrid contribution 1.192 -1.124 -1.278 2.077 sum -12.152 1.360 8.380 14.823 Atomic orbital electron populations 1.21718 0.93608 1.02102 1.02004 1.21760 0.97164 0.97256 0.98122 1.21845 1.01139 0.95208 1.02265 1.21403 0.87595 0.82508 0.98323 0.87772 1.86489 1.76531 1.23926 1.50404 1.22209 0.95171 1.08106 0.90484 1.21471 0.87957 0.98990 0.95168 1.60603 1.04691 1.52406 1.13759 1.19173 0.93510 0.92736 0.86398 1.21529 0.91977 1.50257 0.93593 0.91817 1.25951 1.04532 0.94530 0.94636 1.70091 1.37142 1.51194 0.99017 0.85327 0.78456 0.78580 0.77900 1.19680 1.20687 1.18879 1.22951 1.02300 0.93397 0.99909 1.22891 1.01591 0.95859 0.99673 0.92170 0.92329 0.92398 0.91985 0.91519 0.93124 0.92426 0.77035 0.91195 0.96807 0.84940 1.02405 0.98258 0.92597 0.89288 0.87527 0.87816 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.05 71.98 0.65 -1.91 16 2 C -0.12 -2.74 2.14 -10.79 -0.02 -2.76 16 3 C -0.15 -3.31 8.60 71.98 0.62 -2.69 16 4 C 0.16 3.70 2.66 30.59 0.08 3.78 16 5 H 0.10 2.24 7.90 -2.39 -0.02 2.22 16 6 O -0.57 -13.32 12.58 -148.98 -1.87 -15.20 16 7 C -0.16 -4.33 1.22 -52.18 -0.06 -4.39 16 8 C 0.09 3.26 4.50 86.30 0.39 3.65 16 9 N -0.68 -29.21 5.40 -517.93 -2.80 -32.01 16 10 C 0.21 11.32 5.44 85.56 0.47 11.79 16 11 C -0.54 -30.72 9.32 25.60 0.24 -30.48 16 12 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 13 C 0.00 0.10 5.46 84.65 0.46 0.56 16 14 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 15 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 19 C -0.15 -3.96 9.56 30.62 0.29 -3.67 16 20 C -0.16 -4.35 9.51 30.62 0.29 -4.06 16 21 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.10 7.68 -2.38 -0.02 1.08 16 24 H 0.06 1.53 6.97 -2.39 -0.02 1.51 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.37 5.63 -2.39 -0.01 1.36 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.38 7.69 9.05 -74.06 -0.67 7.02 16 29 H 0.07 2.53 5.33 -2.38 -0.01 2.52 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.33 13.70 6.61 -89.69 -0.59 13.11 16 32 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 16 33 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.09 2.83 7.58 -2.38 -0.02 2.82 16 36 H 0.11 2.32 8.05 -2.39 -0.02 2.30 16 37 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.08 2.44 6.35 -2.39 -0.02 2.43 16 Total: -1.00 -63.08 301.97 0.82 -62.26 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -0.22 Total: 25.14 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 3.40 Total: -30.18 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -2.51 Total: -88.44 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -1.87 Total: -15.20 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -63.08 0.82 -62.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592432778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.395 kcal (2) G-P(sol) polarization free energy of solvation -63.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds