Wall clock time and date at job start Sun Mar 29 2020 21:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46801 * 2 1 4 4 H 1.09002 * 109.47094 * 304.14724 * 3 2 1 5 5 C 1.50703 * 109.46607 * 184.15168 * 3 2 1 6 6 H 1.08000 * 119.99809 * 245.40294 * 5 3 2 7 7 C 1.37873 * 120.00151 * 65.40650 * 5 3 2 8 8 N 1.31517 * 119.99809 * 193.89127 * 7 5 3 9 9 Si 1.86799 * 120.00139 * 13.89274 * 7 5 3 10 10 H 1.48498 * 109.47263 * 84.19664 * 9 7 5 11 11 H 1.48505 * 109.47077 * 204.19173 * 9 7 5 12 12 H 1.48501 * 109.47057 * 324.19324 * 9 7 5 13 13 N 1.46900 * 109.47293 * 64.14979 * 3 2 1 14 14 C 1.46900 * 110.99606 * 262.09044 * 13 3 2 15 15 C 1.53002 * 109.46670 * 175.07932 * 14 13 3 16 16 O 1.42902 * 109.47049 * 65.00023 * 15 14 13 17 17 C 1.42906 * 113.99669 * 180.02562 * 16 15 14 18 18 C 1.53780 * 113.61334 * 209.99606 * 17 16 15 19 19 C 1.53779 * 87.17494 * 220.06395 * 18 17 16 20 20 C 1.53781 * 87.07974 * 25.38883 * 19 18 17 21 21 H 1.09002 * 109.47212 * 177.38663 * 1 2 3 22 22 H 1.09003 * 109.47025 * 297.37786 * 1 2 3 23 23 H 1.09002 * 109.47319 * 57.38156 * 1 2 3 24 24 H 1.09001 * 109.47097 * 240.00136 * 2 1 3 25 25 H 1.08999 * 109.47026 * 119.99837 * 2 1 3 26 26 H 0.97001 * 119.99727 * 179.97438 * 8 7 5 27 27 H 1.00892 * 110.99596 * 138.13277 * 13 3 2 28 28 H 1.08995 * 109.47376 * 55.08269 * 14 13 3 29 29 H 1.08998 * 109.47166 * 295.07577 * 14 13 3 30 30 H 1.09003 * 109.47202 * 304.99536 * 15 14 13 31 31 H 1.08998 * 109.47149 * 184.99643 * 15 14 13 32 32 H 1.08998 * 112.90782 * 341.24604 * 17 16 15 33 33 H 1.08996 * 113.61414 * 105.46491 * 18 17 16 34 34 H 1.08998 * 113.61473 * 334.65302 * 18 17 16 35 35 H 1.09001 * 113.61420 * 139.94116 * 19 18 17 36 36 H 1.09000 * 113.61004 * 270.84282 * 19 18 17 37 37 H 1.09002 * 113.61065 * 89.11896 * 20 19 18 38 38 H 1.09005 * 113.61142 * 219.93230 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6171 1.9774 -0.8505 5 6 3.5434 1.4438 -0.1029 6 1 4.1405 1.8129 0.7179 7 6 4.1567 0.9738 -1.2447 8 7 5.4465 0.7169 -1.2402 9 14 3.1556 0.7018 -2.7982 10 1 3.0358 1.9823 -3.5405 11 1 3.8336 -0.3048 -3.6541 12 1 1.8017 0.2115 -2.4351 13 7 1.6338 2.1056 1.2464 14 6 0.4208 2.9092 1.0441 15 6 -0.0401 3.4832 2.3853 16 8 0.9424 4.3983 2.8747 17 6 0.6077 4.9939 4.1298 18 6 1.1855 6.4071 4.3145 19 6 1.4803 6.0136 5.7716 20 6 1.5245 4.5551 5.2861 21 1 -0.3634 -1.0266 -0.0469 22 1 -0.3633 0.4726 0.9126 23 1 -0.3634 0.5540 -0.8656 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8779 0.3859 -2.0435 27 1 2.3838 2.6697 1.6168 28 1 -0.3664 2.2804 0.6282 29 1 0.6365 3.7252 0.3544 30 1 -0.1705 2.6724 3.1020 31 1 -0.9875 4.0051 2.2508 32 1 -0.4545 4.9226 4.3635 33 1 0.4425 7.1986 4.2177 34 1 2.0817 6.5932 3.7227 35 1 2.4389 6.3812 6.1378 36 1 0.6570 6.2215 6.4550 37 1 2.5135 4.2335 4.9596 38 1 1.0565 3.8514 5.9746 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594006632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:48 Heat of formation + Delta-G solvation = -31.970657 kcal Electronic energy + Delta-G solvation = -16156.048345 eV Core-core repulsion = 13613.092787 eV Total energy + Delta-G solvation = -2542.955558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.15373 -36.92287 -35.52406 -32.43530 -31.38119 -28.77744 -26.14788 -25.62464 -24.49168 -22.54960 -21.34631 -19.72270 -19.46333 -17.03987 -16.87623 -15.59044 -15.29902 -15.11934 -14.49398 -13.80657 -13.53616 -13.09467 -12.83119 -12.43879 -12.40719 -12.17393 -11.85724 -11.72413 -11.55897 -11.13828 -11.03119 -10.76655 -10.70044 -10.46197 -10.38334 -10.10644 -9.78208 -9.28920 -9.18035 -9.02917 -8.41413 -7.34808 -6.08250 -4.03829 3.30440 3.39110 3.41652 3.93022 4.43975 4.58847 4.64938 4.84700 4.87976 5.10837 5.24543 5.26528 5.54423 5.63914 5.67540 5.78525 5.83010 5.84576 5.96121 6.06755 6.08009 6.09906 6.22292 6.27317 6.32504 6.38255 6.70810 6.79887 7.07276 7.10069 7.51342 7.51428 7.71778 8.04817 8.47830 8.69534 9.01516 9.57538 11.04893 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033443 B = 0.006051 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.032162 B = 4626.062551 C = 5067.942963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.190 3.810 4 H 0.000 1.000 5 C -0.528 4.528 6 H 0.076 0.924 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.863 3.137 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.677 5.677 14 C 0.054 3.946 15 C 0.066 3.934 16 O -0.368 6.368 17 C 0.063 3.937 18 C -0.138 4.138 19 C -0.143 4.143 20 C -0.156 4.156 21 H 0.034 0.966 22 H 0.056 0.944 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.263 0.737 27 H 0.347 0.653 28 H 0.081 0.919 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 7.382 9.377 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.081 3.919 4 H 0.018 0.982 5 C -0.566 4.566 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.690 3.310 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.173 1.173 13 N -0.309 5.309 14 C -0.076 4.076 15 C -0.011 4.011 16 O -0.287 6.287 17 C 0.004 3.996 18 C -0.176 4.176 19 C -0.181 4.181 20 C -0.193 4.193 21 H 0.053 0.947 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.165 0.835 28 H 0.099 0.901 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.947 6.802 9.398 16.653 hybrid contribution -0.277 0.502 -1.328 1.446 sum -12.224 7.304 8.070 16.368 Atomic orbital electron populations 1.21918 0.98850 0.99473 1.00475 1.21927 0.92578 0.99540 1.01080 1.19432 0.95380 0.90656 0.86432 0.98247 1.21221 0.89300 1.43056 1.03017 0.90590 1.24905 0.94730 0.94242 0.98751 1.69973 1.10337 1.44086 1.28663 0.87265 0.81957 0.78140 0.83648 1.20666 1.21514 1.17294 1.60545 1.06679 1.33222 1.30442 1.22132 0.96038 0.95655 0.93770 1.22676 0.90263 0.91499 0.96684 1.88002 1.45287 1.59525 1.35879 1.23666 0.97599 0.93776 0.84526 1.23206 1.01927 0.96013 0.96452 1.22654 1.02000 0.97146 0.96254 1.23495 1.01887 0.96357 0.97584 0.94655 0.92555 0.94459 0.92815 0.92270 0.92697 0.83457 0.90085 0.95463 0.92742 0.94084 0.90170 0.91498 0.89088 0.90926 0.90379 0.88879 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.65 37.16 0.32 -2.44 16 2 C -0.11 -2.53 4.97 -26.73 -0.13 -2.67 16 3 C 0.19 4.56 1.80 -68.86 -0.12 4.44 16 4 H 0.00 0.00 6.42 -51.93 -0.33 -0.33 16 5 C -0.53 -14.99 9.00 -34.44 -0.31 -15.30 16 6 H 0.08 2.34 7.73 -52.49 -0.41 1.94 16 7 C 0.08 2.22 5.36 -17.82 -0.10 2.12 16 8 N -0.89 -27.46 13.96 55.43 0.77 -26.69 16 9 Si 0.86 21.41 25.87 -169.99 -4.40 17.02 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.25 -5.80 5.35 56.52 0.30 -5.49 16 13 N -0.68 -14.31 6.08 -107.95 -0.66 -14.96 16 14 C 0.05 0.95 5.40 -3.82 -0.02 0.93 16 15 C 0.07 0.97 6.12 37.16 0.23 1.20 16 16 O -0.37 -5.85 9.96 -35.23 -0.35 -6.20 16 17 C 0.06 0.78 4.32 -25.83 -0.11 0.66 16 18 C -0.14 -1.51 7.91 -25.92 -0.20 -1.72 16 19 C -0.14 -1.37 8.08 -25.92 -0.21 -1.58 16 20 C -0.16 -1.81 7.92 -25.83 -0.20 -2.01 16 21 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.97 6.30 -51.93 -0.33 0.65 16 23 H 0.04 0.66 8.11 -51.93 -0.42 0.24 16 24 H 0.05 1.26 4.72 -51.93 -0.25 1.02 16 25 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.35 7.78 7.66 -39.30 -0.30 7.48 16 28 H 0.08 1.34 5.55 -51.93 -0.29 1.05 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 297.21 15.07 4.48 4.48 Total: -1.00 -30.08 297.21 -7.63 -37.71 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.62 Total: 5.01 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.86 Total: -16.36 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.12 Total: -41.65 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.35 Total: -6.20 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.40 Total: 17.02 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.08 -7.63 -37.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.739 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds