Wall clock time and date at job start Sun Mar 29 2020 21:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46801 * 2 1 4 4 H 1.09002 * 109.47094 * 304.14724 * 3 2 1 5 5 C 1.50703 * 109.46607 * 184.15168 * 3 2 1 6 6 H 1.08000 * 119.99809 * 245.40294 * 5 3 2 7 7 C 1.37873 * 120.00151 * 65.40650 * 5 3 2 8 8 N 1.31517 * 119.99809 * 193.89127 * 7 5 3 9 9 Si 1.86799 * 120.00139 * 13.89274 * 7 5 3 10 10 H 1.48498 * 109.47263 * 84.19664 * 9 7 5 11 11 H 1.48505 * 109.47077 * 204.19173 * 9 7 5 12 12 H 1.48501 * 109.47057 * 324.19324 * 9 7 5 13 13 N 1.46900 * 109.47293 * 64.14979 * 3 2 1 14 14 C 1.46900 * 110.99606 * 262.09044 * 13 3 2 15 15 C 1.53002 * 109.46670 * 175.07932 * 14 13 3 16 16 O 1.42902 * 109.47049 * 65.00023 * 15 14 13 17 17 C 1.42906 * 113.99669 * 180.02562 * 16 15 14 18 18 C 1.53780 * 113.61334 * 209.99606 * 17 16 15 19 19 C 1.53779 * 87.17494 * 220.06395 * 18 17 16 20 20 C 1.53781 * 87.07974 * 25.38883 * 19 18 17 21 21 H 1.09002 * 109.47212 * 177.38663 * 1 2 3 22 22 H 1.09003 * 109.47025 * 297.37786 * 1 2 3 23 23 H 1.09002 * 109.47319 * 57.38156 * 1 2 3 24 24 H 1.09001 * 109.47097 * 240.00136 * 2 1 3 25 25 H 1.08999 * 109.47026 * 119.99837 * 2 1 3 26 26 H 0.97001 * 119.99727 * 179.97438 * 8 7 5 27 27 H 1.00892 * 110.99596 * 138.13277 * 13 3 2 28 28 H 1.08995 * 109.47376 * 55.08269 * 14 13 3 29 29 H 1.08998 * 109.47166 * 295.07577 * 14 13 3 30 30 H 1.09003 * 109.47202 * 304.99536 * 15 14 13 31 31 H 1.08998 * 109.47149 * 184.99643 * 15 14 13 32 32 H 1.08998 * 112.90782 * 341.24604 * 17 16 15 33 33 H 1.08996 * 113.61414 * 105.46491 * 18 17 16 34 34 H 1.08998 * 113.61473 * 334.65302 * 18 17 16 35 35 H 1.09001 * 113.61420 * 139.94116 * 19 18 17 36 36 H 1.09000 * 113.61004 * 270.84282 * 19 18 17 37 37 H 1.09002 * 113.61065 * 89.11896 * 20 19 18 38 38 H 1.09005 * 113.61142 * 219.93230 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6171 1.9774 -0.8505 5 6 3.5434 1.4438 -0.1029 6 1 4.1405 1.8129 0.7179 7 6 4.1567 0.9738 -1.2447 8 7 5.4465 0.7169 -1.2402 9 14 3.1556 0.7018 -2.7982 10 1 3.0358 1.9823 -3.5405 11 1 3.8336 -0.3048 -3.6541 12 1 1.8017 0.2115 -2.4351 13 7 1.6338 2.1056 1.2464 14 6 0.4208 2.9092 1.0441 15 6 -0.0401 3.4832 2.3853 16 8 0.9424 4.3983 2.8747 17 6 0.6077 4.9939 4.1298 18 6 1.1855 6.4071 4.3145 19 6 1.4803 6.0136 5.7716 20 6 1.5245 4.5551 5.2861 21 1 -0.3634 -1.0266 -0.0469 22 1 -0.3633 0.4726 0.9126 23 1 -0.3634 0.5540 -0.8656 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8779 0.3859 -2.0435 27 1 2.3838 2.6697 1.6168 28 1 -0.3664 2.2804 0.6282 29 1 0.6365 3.7252 0.3544 30 1 -0.1705 2.6724 3.1020 31 1 -0.9875 4.0051 2.2508 32 1 -0.4545 4.9226 4.3635 33 1 0.4425 7.1986 4.2177 34 1 2.0817 6.5932 3.7227 35 1 2.4389 6.3812 6.1378 36 1 0.6570 6.2215 6.4550 37 1 2.5135 4.2335 4.9596 38 1 1.0565 3.8514 5.9746 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594006632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:48 Heat of formation + Delta-G solvation = -52.794935 kcal Electronic energy + Delta-G solvation = -16156.951353 eV Core-core repulsion = 13613.092787 eV Total energy + Delta-G solvation = -2543.858567 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13940 -38.46949 -36.81193 -34.47525 -33.04214 -30.39152 -27.87256 -26.51920 -25.44171 -24.36098 -22.72092 -21.43227 -20.50210 -18.97629 -18.12147 -17.17333 -16.57579 -16.34715 -15.86218 -15.37134 -15.01796 -14.87332 -14.38945 -13.94483 -13.76294 -13.34434 -13.27677 -13.08213 -12.94498 -12.66693 -12.52192 -12.25669 -12.13183 -11.81118 -11.54666 -11.54076 -11.24339 -11.14419 -10.99559 -10.58940 -10.25226 -9.06698 -8.32833 -6.33662 1.33956 1.35843 1.46463 2.34020 2.88775 3.01838 3.55501 3.73045 3.77562 3.97829 4.01088 4.26401 4.41661 4.45951 4.49241 4.52544 4.55451 4.71683 4.79411 4.85891 4.88372 4.89178 5.00239 5.06213 5.07083 5.23025 5.28387 5.31615 5.42793 5.45819 5.57002 5.82909 6.01868 6.47156 6.51458 6.69336 6.86712 7.32338 8.84034 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033443 B = 0.006051 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.032162 B = 4626.062551 C = 5067.942963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.195 3.805 4 H 0.000 1.000 5 C -0.537 4.537 6 H 0.031 0.969 7 C 0.019 3.981 8 N -0.943 5.943 9 Si 0.929 3.071 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.220 1.220 13 N -0.677 5.677 14 C 0.052 3.948 15 C 0.071 3.929 16 O -0.400 6.400 17 C 0.053 3.947 18 C -0.140 4.140 19 C -0.129 4.129 20 C -0.163 4.163 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.266 0.734 27 H 0.334 0.666 28 H 0.099 0.901 29 H 0.016 0.984 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.165 7.654 9.411 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C 0.085 3.915 4 H 0.017 0.983 5 C -0.575 4.575 6 H 0.049 0.951 7 C -0.179 4.179 8 N -0.582 5.582 9 Si 0.752 3.248 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.143 1.143 13 N -0.307 5.307 14 C -0.078 4.078 15 C -0.006 4.006 16 O -0.320 6.320 17 C -0.005 4.005 18 C -0.178 4.178 19 C -0.166 4.166 20 C -0.201 4.201 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.151 0.849 28 H 0.116 0.884 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.207 7.080 9.453 19.255 hybrid contribution 0.801 0.465 -1.228 1.538 sum -14.407 7.545 8.225 18.224 Atomic orbital electron populations 1.21823 0.95118 1.01390 1.01531 1.21826 0.95889 0.97581 0.99854 1.19329 0.92255 0.92265 0.87636 0.98290 1.21535 0.91834 1.42355 1.01801 0.95076 1.25810 0.95802 0.93984 1.02344 1.70117 1.12509 1.45793 1.29793 0.86201 0.81593 0.78232 0.78755 1.20251 1.21239 1.14273 1.60564 1.07428 1.33906 1.28836 1.22285 0.94627 0.95214 0.95650 1.22626 0.91063 0.91867 0.94997 1.87975 1.46418 1.59948 1.37614 1.24005 0.99021 0.94249 0.83217 1.23203 1.01541 0.95930 0.97113 1.22651 1.03153 0.95001 0.95806 1.23493 1.00529 0.98131 0.97967 0.92375 0.91440 0.93456 0.93941 0.93734 0.92534 0.84899 0.88351 0.96577 0.92476 0.90897 0.87787 0.89642 0.91103 0.90595 0.87942 0.91549 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 8.65 71.98 0.62 -4.07 16 2 C -0.11 -4.90 4.97 30.60 0.15 -4.75 16 3 C 0.19 9.29 1.80 44.17 0.08 9.37 16 4 H 0.00 -0.02 6.42 -2.39 -0.02 -0.04 16 5 C -0.54 -31.53 9.00 25.60 0.23 -31.30 16 6 H 0.03 2.04 7.73 -2.91 -0.02 2.02 16 7 C 0.02 1.12 5.36 84.65 0.45 1.57 16 8 N -0.94 -59.94 13.96 21.45 0.30 -59.64 16 9 Si 0.93 44.09 25.87 68.60 1.77 45.87 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.22 -9.37 5.35 99.48 0.53 -8.84 16 13 N -0.68 -28.57 6.08 -495.44 -3.01 -31.58 16 14 C 0.05 1.73 5.40 86.30 0.47 2.19 16 15 C 0.07 1.95 6.12 71.98 0.44 2.39 16 16 O -0.40 -12.42 9.96 -148.98 -1.48 -13.91 16 17 C 0.05 1.22 4.32 31.18 0.13 1.35 16 18 C -0.14 -2.88 7.91 31.12 0.25 -2.63 16 19 C -0.13 -2.22 8.08 31.12 0.25 -1.97 16 20 C -0.16 -3.68 7.92 31.18 0.25 -3.43 16 21 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.07 2.08 6.30 -2.39 -0.02 2.07 16 23 H 0.05 1.48 8.11 -2.39 -0.02 1.46 16 24 H 0.04 1.91 4.72 -2.39 -0.01 1.90 16 25 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 27 H 0.33 15.54 7.66 -89.70 -0.69 14.86 16 28 H 0.10 2.93 5.55 -2.39 -0.01 2.92 16 29 H 0.02 0.57 8.14 -2.39 -0.02 0.56 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.89 7.87 -2.39 -0.02 1.88 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -67.06 297.21 1.06 -66.00 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.16 Total: 24.54 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 3.32 Total: -31.27 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -2.71 Total: -91.22 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -1.48 Total: -13.91 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.77 Total: 45.87 kcal Total: -67.06 1.06 -66.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.205 kcal (2) G-P(sol) polarization free energy of solvation -67.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds