Wall clock time and date at job start Sun Mar 29 2020 22:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99993 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00130 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47108 * 89.99504 * 9 7 5 11 11 H 1.48498 * 109.47097 * 209.99712 * 9 7 5 12 12 H 1.48499 * 109.46508 * 329.99366 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.09000 * 112.84927 * 23.80491 * 15 14 13 17 17 C 1.53774 * 113.61273 * 155.00113 * 15 14 13 18 18 C 1.53782 * 87.08079 * 139.98339 * 17 15 14 19 19 H 1.09005 * 113.61099 * 220.02130 * 18 17 15 20 20 O 1.42902 * 113.61700 * 89.11834 * 18 17 15 21 21 C 1.53773 * 113.61451 * 252.49922 * 15 14 13 22 22 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 23 23 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 24 24 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 27 27 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 28 28 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 29 29 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 30 30 H 0.96999 * 120.00009 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 32 32 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 34 34 H 1.08999 * 113.61402 * 254.52887 * 17 15 14 35 35 H 1.09000 * 113.61810 * 25.34657 * 17 15 14 36 36 H 0.96693 * 113.99910 * 180.02562 * 20 18 17 37 37 H 1.09006 * 113.61615 * 334.56574 * 21 15 14 38 38 H 1.09003 * 113.61832 * 105.46900 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 1.4324 0.1378 -4.8058 9 14 2.9453 -2.0006 -3.9032 10 1 2.0867 -3.2114 -3.9491 11 1 3.7376 -1.9078 -5.1557 12 1 3.8653 -2.0898 -2.7410 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 1 2.9299 -1.2760 3.5119 17 6 2.0923 0.2374 4.8916 18 6 1.5460 -0.9370 5.7206 19 1 0.8121 -0.6388 6.4694 20 8 2.5654 -1.7878 6.2489 21 6 0.9191 -1.4620 4.4183 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 3.1300 -0.7218 -1.2489 29 1 1.6767 -1.7491 -1.2491 30 1 1.6668 -0.1937 -5.6867 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2494 33 1 1.8198 0.9437 2.4401 34 1 3.1077 0.5273 5.1616 35 1 1.4112 1.0864 4.8330 36 1 2.2280 -2.5285 6.7710 37 1 -0.0840 -1.0785 4.2310 38 1 0.9873 -2.5441 4.3062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595000665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:27 Heat of formation + Delta-G solvation = -42.839481 kcal Electronic energy + Delta-G solvation = -16192.760689 eV Core-core repulsion = 13649.333823 eV Total energy + Delta-G solvation = -2543.426866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.57695 -37.38290 -35.18025 -32.74806 -31.50086 -27.62261 -26.37821 -25.88629 -25.41628 -23.30548 -21.69880 -19.79059 -17.82187 -17.29960 -16.76157 -15.78558 -15.37604 -14.79742 -14.10343 -13.90159 -13.77368 -13.26742 -12.76899 -12.45816 -12.41282 -12.19724 -11.99361 -11.68732 -11.07520 -11.01657 -10.88062 -10.81235 -10.52408 -10.47892 -10.24706 -9.92891 -9.76195 -9.64702 -9.22220 -8.86434 -8.47661 -8.13053 -5.98105 -3.94065 3.33886 3.41372 3.45290 3.87355 4.43542 4.45263 4.50278 4.65472 4.79323 5.10227 5.35072 5.37651 5.60624 5.63516 5.70138 5.73745 5.88917 5.92775 6.07453 6.11042 6.24582 6.30716 6.45925 6.61773 6.73080 6.82194 7.10433 7.16565 7.22980 7.35534 7.36949 7.42958 7.49416 7.67483 7.87806 8.62028 9.07833 9.65239 11.15033 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046912 B = 0.005380 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.721867 B = 5203.152974 C = 5483.152790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.050 4.050 3 C -0.131 4.131 4 C -0.005 4.005 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.675 5.675 15 C 0.066 3.934 16 H 0.072 0.928 17 C -0.137 4.137 18 C 0.075 3.925 19 H 0.067 0.933 20 O -0.554 6.554 21 C -0.156 4.156 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.012 0.988 29 H 0.010 0.990 30 H 0.261 0.739 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.340 0.660 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.379 0.621 37 H 0.096 0.904 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -1.894 19.726 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.050 4.050 3 C -0.188 4.188 4 C -0.043 4.043 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.062 4.062 14 N -0.307 5.307 15 C -0.045 4.045 16 H 0.090 0.910 17 C -0.175 4.175 18 C 0.016 3.984 19 H 0.085 0.915 20 O -0.360 6.360 21 C -0.194 4.194 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.226 0.774 37 H 0.114 0.886 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.036 -1.787 19.208 19.290 hybrid contribution 1.180 -1.070 -0.056 1.594 sum 1.144 -2.857 19.152 19.397 Atomic orbital electron populations 1.21609 0.94564 1.00616 1.00646 1.20426 0.96182 0.95053 0.93336 1.21778 0.99609 0.96474 1.00924 1.19631 0.95808 0.95462 0.93364 1.21144 1.31382 1.13209 0.88696 0.90427 1.25015 0.95809 0.96728 0.96024 1.69911 1.46192 1.40668 0.97811 0.86849 0.81312 0.84075 0.77446 1.20443 1.21572 1.19204 1.22177 0.96193 0.98124 0.89669 1.60706 1.62839 1.06222 1.00914 1.22917 0.96540 0.96143 0.88883 0.91027 1.23322 1.02287 0.96570 0.95352 1.22616 0.89856 0.92229 0.93721 0.91464 1.86459 1.34542 1.42797 1.72169 1.23728 0.99919 1.00311 0.95462 0.93702 0.92165 0.94276 0.94154 0.91163 0.94575 0.96968 0.97188 0.92911 0.95925 0.91708 0.83993 0.90959 0.88233 0.77373 0.88590 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 2 C -0.05 -0.97 0.60 -154.51 -0.09 -1.06 16 3 C -0.13 -2.43 7.89 37.16 0.29 -2.13 16 4 C 0.00 -0.12 3.11 -27.88 -0.09 -0.20 16 5 C -0.51 -14.11 8.20 -34.44 -0.28 -14.40 16 6 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -27.96 13.96 55.43 0.77 -27.19 16 9 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 13 C 0.07 1.14 4.49 -3.82 -0.02 1.12 16 14 N -0.67 -9.58 5.77 -105.87 -0.61 -10.19 16 15 C 0.07 0.82 4.08 -66.91 -0.27 0.55 16 16 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 17 C -0.14 -1.44 7.48 -25.92 -0.19 -1.63 16 18 C 0.08 0.73 5.28 -25.92 -0.14 0.59 16 19 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 20 O -0.55 -5.55 13.59 -35.23 -0.48 -6.03 16 21 C -0.16 -1.71 7.71 -25.92 -0.20 -1.91 16 22 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 23 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 27 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 28 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 29 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.02 0.39 8.13 -51.93 -0.42 -0.03 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.34 4.62 6.58 -39.29 -0.26 4.36 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.38 2.07 9.12 45.56 0.42 2.49 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 297.16 15.07 4.48 4.48 Total: -1.00 -30.94 297.16 -7.02 -37.96 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.72 Total: 2.88 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -0.79 Total: -19.26 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.16 Total: -37.38 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.48 Total: -6.03 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.94 -7.02 -37.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595000665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.879 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds