Wall clock time and date at job start Sun Mar 29 2020 22:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99993 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00130 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47108 * 89.99504 * 9 7 5 11 11 H 1.48498 * 109.47097 * 209.99712 * 9 7 5 12 12 H 1.48499 * 109.46508 * 329.99366 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.09000 * 112.84927 * 23.80491 * 15 14 13 17 17 C 1.53774 * 113.61273 * 155.00113 * 15 14 13 18 18 C 1.53782 * 87.08079 * 139.98339 * 17 15 14 19 19 H 1.09005 * 113.61099 * 220.02130 * 18 17 15 20 20 O 1.42902 * 113.61700 * 89.11834 * 18 17 15 21 21 C 1.53773 * 113.61451 * 252.49922 * 15 14 13 22 22 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 23 23 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 24 24 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 27 27 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 28 28 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 29 29 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 30 30 H 0.96999 * 120.00009 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 32 32 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 34 34 H 1.08999 * 113.61402 * 254.52887 * 17 15 14 35 35 H 1.09000 * 113.61810 * 25.34657 * 17 15 14 36 36 H 0.96693 * 113.99910 * 180.02562 * 20 18 17 37 37 H 1.09006 * 113.61615 * 334.56574 * 21 15 14 38 38 H 1.09003 * 113.61832 * 105.46900 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 1.4324 0.1378 -4.8058 9 14 2.9453 -2.0006 -3.9032 10 1 2.0867 -3.2114 -3.9491 11 1 3.7376 -1.9078 -5.1557 12 1 3.8653 -2.0898 -2.7410 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 1 2.9299 -1.2760 3.5119 17 6 2.0923 0.2374 4.8916 18 6 1.5460 -0.9370 5.7206 19 1 0.8121 -0.6388 6.4694 20 8 2.5654 -1.7878 6.2489 21 6 0.9191 -1.4620 4.4183 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 3.1300 -0.7218 -1.2489 29 1 1.6767 -1.7491 -1.2491 30 1 1.6668 -0.1937 -5.6867 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2494 33 1 1.8198 0.9437 2.4401 34 1 3.1077 0.5273 5.1616 35 1 1.4112 1.0864 4.8330 36 1 2.2280 -2.5285 6.7710 37 1 -0.0840 -1.0785 4.2310 38 1 0.9873 -2.5441 4.3062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595000665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:27 Heat of formation + Delta-G solvation = -65.698275 kcal Electronic energy + Delta-G solvation = -16193.751921 eV Core-core repulsion = 13649.333823 eV Total energy + Delta-G solvation = -2544.418098 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47364 -38.83203 -36.15618 -34.62654 -32.97027 -29.56960 -27.93206 -26.99274 -26.52753 -24.66198 -23.26706 -20.65806 -19.39271 -18.87720 -18.11181 -16.84213 -16.39427 -16.25949 -15.78847 -15.33386 -15.19565 -14.51314 -14.40915 -14.11563 -13.57540 -13.34929 -13.21584 -12.94690 -12.77745 -12.69687 -12.41303 -12.25264 -12.12288 -11.78502 -11.71919 -11.40908 -11.23689 -11.02507 -10.86079 -10.70752 -10.52250 -9.28415 -8.22544 -6.22686 1.34611 1.36102 1.47183 2.38536 3.12351 3.20627 3.34166 3.61750 3.87111 3.91424 4.12292 4.18540 4.31568 4.32996 4.55218 4.71838 4.79073 4.85954 4.90428 4.93021 5.03178 5.07772 5.09814 5.18103 5.26498 5.30302 5.37199 5.44321 5.52642 5.61874 5.75545 5.81646 6.19084 6.41400 6.54886 6.84328 6.92162 7.39818 8.93637 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046912 B = 0.005380 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.721867 B = 5203.152974 C = 5483.152790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.049 4.049 3 C -0.124 4.124 4 C -0.004 4.004 5 C -0.503 4.503 6 H 0.046 0.954 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.939 3.061 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.252 1.252 13 C 0.081 3.919 14 N -0.671 5.671 15 C 0.055 3.945 16 H 0.056 0.944 17 C -0.133 4.133 18 C 0.084 3.916 19 H 0.092 0.908 20 O -0.573 6.573 21 C -0.153 4.153 22 H 0.068 0.932 23 H 0.028 0.972 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.263 0.737 31 H 0.021 0.979 32 H 0.060 0.940 33 H 0.344 0.656 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.398 0.602 37 H 0.097 0.903 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -2.710 22.203 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.050 4.050 3 C -0.182 4.182 4 C -0.042 4.042 5 C -0.542 4.542 6 H 0.064 0.936 7 C -0.193 4.193 8 N -0.595 5.595 9 Si 0.764 3.236 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.176 1.176 13 C -0.049 4.049 14 N -0.303 5.303 15 C -0.055 4.055 16 H 0.074 0.926 17 C -0.171 4.171 18 C 0.025 3.975 19 H 0.110 0.890 20 O -0.382 6.382 21 C -0.192 4.192 22 H 0.087 0.913 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.165 0.835 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.248 0.752 37 H 0.116 0.884 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.402 -2.615 21.721 21.882 hybrid contribution 0.998 -0.767 -0.789 1.486 sum 1.400 -3.382 20.932 21.250 Atomic orbital electron populations 1.21505 0.94445 1.00329 1.00231 1.20365 0.96227 0.95465 0.92928 1.21694 0.99702 0.95822 1.00947 1.19604 0.95520 0.95377 0.93677 1.21420 1.30122 1.12196 0.90419 0.93596 1.25897 0.97541 1.00114 0.95770 1.70059 1.48244 1.42799 0.98433 0.85817 0.79734 0.80161 0.77870 1.19581 1.21282 1.17621 1.21889 0.95909 0.97654 0.89441 1.60686 1.62681 1.06396 1.00513 1.23019 0.96656 0.97111 0.88749 0.92609 1.23336 1.02566 0.97045 0.94122 1.22576 0.89821 0.91406 0.93710 0.88986 1.86416 1.35371 1.43802 1.72598 1.23713 0.99424 0.99935 0.96091 0.91289 0.95253 0.94475 0.93904 0.94360 0.91294 0.97120 0.97210 0.92857 0.96083 0.92135 0.83503 0.91374 0.86858 0.75189 0.88436 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.11 8.06 71.98 0.58 -3.53 16 2 C -0.05 -1.89 0.60 -52.18 -0.03 -1.92 16 3 C -0.12 -4.52 7.89 71.98 0.57 -3.95 16 4 C 0.00 -0.19 3.11 29.85 0.09 -0.09 16 5 C -0.50 -28.67 8.20 25.60 0.21 -28.46 16 6 H 0.05 2.85 5.92 -2.91 -0.02 2.83 16 7 C 0.00 0.15 5.47 84.65 0.46 0.62 16 8 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 9 Si 0.94 45.40 27.47 68.60 1.88 47.29 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 12 H -0.25 -11.48 6.54 99.48 0.65 -10.83 16 13 C 0.08 2.58 4.49 86.30 0.39 2.97 16 14 N -0.67 -17.39 5.77 -488.86 -2.82 -20.21 16 15 C 0.05 1.25 4.08 45.44 0.19 1.43 16 16 H 0.06 1.47 7.87 -2.39 -0.02 1.45 16 17 C -0.13 -2.40 7.48 31.12 0.23 -2.17 16 18 C 0.08 1.36 5.28 31.12 0.16 1.52 16 19 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 20 O -0.57 -9.94 13.59 -148.98 -2.02 -11.96 16 21 C -0.15 -2.96 7.71 31.12 0.24 -2.72 16 22 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 23 H 0.03 1.27 6.62 -2.39 -0.02 1.25 16 24 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.04 1.62 6.62 -2.39 -0.02 1.60 16 27 H 0.07 2.02 6.57 -2.39 -0.02 2.01 16 28 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 29 H 0.01 0.46 7.57 -2.38 -0.02 0.44 16 30 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.02 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.34 8.35 6.58 -89.69 -0.59 7.76 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.40 3.25 9.12 -74.06 -0.68 2.58 16 37 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -66.99 297.16 0.15 -66.85 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -0.28 Total: 14.44 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 3.09 Total: -36.31 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -2.52 Total: -80.30 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -2.02 Total: -11.96 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Total: -66.99 0.15 -66.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595000665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.148 kcal (2) G-P(sol) polarization free energy of solvation -66.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds