Wall clock time and date at job start Sun Mar 29 2020 21:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.46968 * 2 1 4 4 H 1.08997 * 109.47113 * 55.01641 * 3 2 1 5 5 C 1.50708 * 109.47183 * 175.01285 * 3 2 1 6 6 H 1.07994 * 120.00333 * 119.99666 * 5 3 2 7 7 C 1.37877 * 119.99481 * 300.00056 * 5 3 2 8 8 N 1.31510 * 120.00472 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99650 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47358 * 59.99749 * 9 7 5 11 11 H 1.48505 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46959 * 299.99502 * 9 7 5 13 13 N 1.46900 * 109.47031 * 295.00932 * 3 2 1 14 14 C 1.46906 * 110.99760 * 156.13116 * 13 3 2 15 15 H 1.08991 * 109.47371 * 34.64099 * 14 13 3 16 16 C 1.53007 * 109.46428 * 274.64326 * 14 13 3 17 17 C 1.53005 * 109.46660 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47337 * 59.99777 * 17 16 14 19 19 C 1.53004 * 109.47514 * 300.00298 * 18 17 16 20 20 C 1.52996 * 109.46894 * 154.64661 * 14 13 3 21 21 H 1.09000 * 109.47211 * 60.00050 * 20 14 13 22 22 O 1.42895 * 109.47238 * 299.99660 * 20 14 13 23 23 H 1.08998 * 109.47178 * 175.42135 * 1 2 3 24 24 H 1.09002 * 109.47125 * 295.42169 * 1 2 3 25 25 H 1.08995 * 109.47353 * 55.42239 * 1 2 3 26 26 H 1.08997 * 109.47392 * 240.00079 * 2 1 3 27 27 H 1.09004 * 109.47432 * 119.99709 * 2 1 3 28 28 H 0.97003 * 120.00344 * 180.02562 * 8 7 5 29 29 H 1.00905 * 111.00065 * 280.07962 * 13 3 2 30 30 H 1.09000 * 109.47278 * 299.99719 * 16 14 13 31 31 H 1.09001 * 109.47280 * 60.00389 * 16 14 13 32 32 H 1.09000 * 109.46862 * 300.00313 * 17 16 14 33 33 H 1.08995 * 109.46945 * 179.97438 * 17 16 14 34 34 H 1.09002 * 109.47535 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.46898 * 59.99720 * 18 17 16 36 36 H 1.08993 * 109.47068 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46790 * 300.00078 * 19 18 17 38 38 H 0.96704 * 113.99984 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6055 1.9815 0.8420 5 6 3.5419 1.4444 0.1235 6 1 4.1470 1.8890 -0.6527 7 6 4.1434 0.8784 1.2275 8 7 3.4066 0.3365 2.1725 9 14 6.0051 0.8813 1.3810 10 1 6.4997 2.2816 1.3814 11 1 6.3983 0.2166 2.6495 12 1 6.5975 0.1474 0.2340 13 7 1.6510 2.0994 -1.2551 14 6 1.5983 3.5583 -1.0914 15 1 2.3753 3.8742 -0.3955 16 6 0.2279 3.9606 -0.5426 17 6 0.1726 5.4801 -0.3727 18 6 0.3969 6.1534 -1.7281 19 6 1.7672 5.7511 -2.2770 20 6 1.8227 4.2320 -2.4466 21 1 1.0455 3.9161 -3.1426 22 8 3.1025 3.8562 -2.9593 23 1 -0.3633 -1.0244 -0.0820 24 1 -0.3633 0.4412 0.9282 25 1 -0.3634 0.5832 -0.8461 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8298 -0.0614 2.9494 29 1 2.2741 1.8421 -2.0060 30 1 -0.5493 3.6447 -1.2386 31 1 0.0680 3.4806 0.4229 32 1 0.9499 5.7964 0.3230 33 1 -0.8038 5.7668 0.0179 34 1 0.3571 7.2360 -1.6071 35 1 -0.3803 5.8371 -2.4239 36 1 1.9267 6.2304 -3.2428 37 1 2.5444 6.0673 -1.5812 38 1 3.3127 4.2478 -3.8181 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595528783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:02 Heat of formation + Delta-G solvation = -79.721723 kcal Electronic energy + Delta-G solvation = -16953.652762 eV Core-core repulsion = 14408.626562 eV Total energy + Delta-G solvation = -2545.026200 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.89097 -35.63053 -35.09281 -32.25510 -31.01988 -29.49578 -27.89353 -25.55815 -22.85707 -22.16839 -21.10917 -19.42446 -19.18859 -16.90051 -16.47227 -15.35450 -14.76580 -14.28260 -13.95407 -13.62731 -13.32037 -13.11370 -12.75840 -12.36877 -12.17560 -11.79297 -11.30919 -11.16463 -11.08059 -10.96796 -10.78311 -10.65034 -10.45786 -10.34416 -10.06155 -9.74913 -9.55428 -9.48502 -9.26229 -8.90852 -8.26914 -7.13471 -5.89249 -4.00653 3.35181 3.39143 3.43240 4.48314 4.53437 4.89788 4.97092 5.21964 5.34443 5.42756 5.50279 5.61917 5.81059 5.82509 5.85824 6.00510 6.18816 6.35137 6.37657 6.44357 6.46690 6.57000 6.59690 6.73749 6.78986 6.94461 7.22079 7.24485 7.55333 7.70060 7.89146 7.99953 8.20225 8.31040 8.46049 8.82997 9.13733 9.66202 11.10693 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.009134 C = 0.007797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.747764 B = 3064.753692 C = 3590.152526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.538 4.538 6 H 0.056 0.944 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.684 5.684 14 C 0.103 3.897 15 H 0.052 0.948 16 C -0.103 4.103 17 C -0.122 4.122 18 C -0.114 4.114 19 C -0.149 4.149 20 C 0.104 3.896 21 H 0.053 0.947 22 O -0.559 6.559 23 H 0.023 0.977 24 H 0.035 0.965 25 H 0.049 0.951 26 H 0.029 0.971 27 H 0.090 0.910 28 H 0.260 0.740 29 H 0.336 0.664 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 8.908 -7.468 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.577 4.577 6 H 0.074 0.926 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.008 4.008 15 H 0.070 0.930 16 C -0.142 4.142 17 C -0.160 4.160 18 C -0.151 4.151 19 C -0.188 4.188 20 C 0.045 3.955 21 H 0.071 0.929 22 O -0.363 6.363 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.154 0.846 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.155 8.369 -6.605 12.311 hybrid contribution 2.051 0.558 -0.288 2.145 sum -4.104 8.927 -6.893 12.002 Atomic orbital electron populations 1.21711 0.99118 0.98364 1.00295 1.21495 0.92013 0.99440 1.01575 1.19140 0.92704 0.91040 0.86349 0.95139 1.21929 0.92944 1.37452 1.05407 0.92563 1.24934 0.97740 0.95213 0.95797 1.69871 1.34738 1.38703 1.09494 0.86733 0.86417 0.78108 0.77155 1.20490 1.21390 1.20356 1.60955 1.56361 1.04284 1.09871 1.21254 0.96098 0.90385 0.93075 0.92983 1.21515 0.97272 0.93714 1.01682 1.21589 1.01299 0.96376 0.96767 1.21458 0.96655 0.99578 0.97425 1.22252 0.98381 0.97093 1.01058 1.22022 0.84690 0.92368 0.96459 0.92861 1.86645 1.36407 1.73904 1.39331 0.95778 0.94628 0.93150 0.95249 0.89224 0.93020 0.84619 0.92034 0.91341 0.92027 0.92218 0.92339 0.92110 0.92389 0.91268 0.78723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.85 37.15 0.37 -2.54 16 2 C -0.11 -2.64 5.45 -26.73 -0.15 -2.78 16 3 C 0.22 5.49 1.79 -68.86 -0.12 5.36 16 4 H 0.03 0.85 7.14 -51.93 -0.37 0.48 16 5 C -0.54 -15.10 8.21 -34.44 -0.28 -15.39 16 6 H 0.06 1.62 7.76 -52.49 -0.41 1.21 16 7 C 0.06 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -25.76 11.29 55.43 0.63 -25.13 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.68 -14.91 5.43 -100.95 -0.55 -15.46 16 14 C 0.10 1.98 2.02 -67.71 -0.14 1.84 16 15 H 0.05 1.19 7.59 -51.93 -0.39 0.79 16 16 C -0.10 -1.73 5.41 -26.72 -0.14 -1.88 16 17 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 18 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 19 C -0.15 -1.95 5.54 -26.75 -0.15 -2.09 16 20 C 0.10 1.63 3.01 -26.76 -0.08 1.55 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 O -0.56 -9.25 12.46 -35.23 -0.44 -9.69 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 1.02 7.63 -51.93 -0.40 0.62 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 2.46 5.95 -51.93 -0.31 2.15 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.34 7.62 7.36 -39.29 -0.29 7.33 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.27 7.44 -51.93 -0.39 0.89 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.37 4.14 9.08 45.56 0.41 4.56 16 LS Contribution 296.29 15.07 4.47 4.47 Total: -1.00 -29.54 296.29 -7.95 -37.48 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.92 Total: 8.90 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -1.11 Total: -17.53 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.08 Total: -40.59 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.44 Total: -9.69 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.54 -7.95 -37.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595528783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.238 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds