Wall clock time and date at job start Sun Mar 29 2020 21:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.46968 * 2 1 4 4 H 1.08997 * 109.47113 * 55.01641 * 3 2 1 5 5 C 1.50708 * 109.47183 * 175.01285 * 3 2 1 6 6 H 1.07994 * 120.00333 * 119.99666 * 5 3 2 7 7 C 1.37877 * 119.99481 * 300.00056 * 5 3 2 8 8 N 1.31510 * 120.00472 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99650 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47358 * 59.99749 * 9 7 5 11 11 H 1.48505 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46959 * 299.99502 * 9 7 5 13 13 N 1.46900 * 109.47031 * 295.00932 * 3 2 1 14 14 C 1.46906 * 110.99760 * 156.13116 * 13 3 2 15 15 H 1.08991 * 109.47371 * 34.64099 * 14 13 3 16 16 C 1.53007 * 109.46428 * 274.64326 * 14 13 3 17 17 C 1.53005 * 109.46660 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47337 * 59.99777 * 17 16 14 19 19 C 1.53004 * 109.47514 * 300.00298 * 18 17 16 20 20 C 1.52996 * 109.46894 * 154.64661 * 14 13 3 21 21 H 1.09000 * 109.47211 * 60.00050 * 20 14 13 22 22 O 1.42895 * 109.47238 * 299.99660 * 20 14 13 23 23 H 1.08998 * 109.47178 * 175.42135 * 1 2 3 24 24 H 1.09002 * 109.47125 * 295.42169 * 1 2 3 25 25 H 1.08995 * 109.47353 * 55.42239 * 1 2 3 26 26 H 1.08997 * 109.47392 * 240.00079 * 2 1 3 27 27 H 1.09004 * 109.47432 * 119.99709 * 2 1 3 28 28 H 0.97003 * 120.00344 * 180.02562 * 8 7 5 29 29 H 1.00905 * 111.00065 * 280.07962 * 13 3 2 30 30 H 1.09000 * 109.47278 * 299.99719 * 16 14 13 31 31 H 1.09001 * 109.47280 * 60.00389 * 16 14 13 32 32 H 1.09000 * 109.46862 * 300.00313 * 17 16 14 33 33 H 1.08995 * 109.46945 * 179.97438 * 17 16 14 34 34 H 1.09002 * 109.47535 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.46898 * 59.99720 * 18 17 16 36 36 H 1.08993 * 109.47068 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46790 * 300.00078 * 19 18 17 38 38 H 0.96704 * 113.99984 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6055 1.9815 0.8420 5 6 3.5419 1.4444 0.1235 6 1 4.1470 1.8890 -0.6527 7 6 4.1434 0.8784 1.2275 8 7 3.4066 0.3365 2.1725 9 14 6.0051 0.8813 1.3810 10 1 6.4997 2.2816 1.3814 11 1 6.3983 0.2166 2.6495 12 1 6.5975 0.1474 0.2340 13 7 1.6510 2.0994 -1.2551 14 6 1.5983 3.5583 -1.0914 15 1 2.3753 3.8742 -0.3955 16 6 0.2279 3.9606 -0.5426 17 6 0.1726 5.4801 -0.3727 18 6 0.3969 6.1534 -1.7281 19 6 1.7672 5.7511 -2.2770 20 6 1.8227 4.2320 -2.4466 21 1 1.0455 3.9161 -3.1426 22 8 3.1025 3.8562 -2.9593 23 1 -0.3633 -1.0244 -0.0820 24 1 -0.3633 0.4412 0.9282 25 1 -0.3634 0.5832 -0.8461 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8298 -0.0614 2.9494 29 1 2.2741 1.8421 -2.0060 30 1 -0.5493 3.6447 -1.2386 31 1 0.0680 3.4806 0.4229 32 1 0.9499 5.7964 0.3230 33 1 -0.8038 5.7668 0.0179 34 1 0.3571 7.2360 -1.6071 35 1 -0.3803 5.8371 -2.4239 36 1 1.9267 6.2304 -3.2428 37 1 2.5444 6.0673 -1.5812 38 1 3.3127 4.2478 -3.8181 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595528783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:02 Heat of formation + Delta-G solvation = -100.734678 kcal Electronic energy + Delta-G solvation = -16954.563952 eV Core-core repulsion = 14408.626562 eV Total energy + Delta-G solvation = -2545.937390 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22855 -37.41561 -36.37860 -34.20211 -32.83114 -30.72628 -29.51147 -27.45899 -24.71002 -23.48890 -22.42014 -21.24627 -20.62618 -18.61802 -18.14885 -16.88746 -16.68699 -15.72195 -15.36623 -15.16432 -14.66456 -14.61111 -14.51977 -13.78503 -13.66959 -13.38186 -13.13963 -13.01020 -12.85038 -12.55777 -12.33234 -12.21246 -12.05401 -11.71373 -11.55396 -11.49576 -11.33209 -11.09220 -10.81235 -10.65043 -10.44572 -9.03131 -8.04823 -6.26252 1.35266 1.36195 1.44427 2.39278 3.13316 3.37011 3.56168 3.84118 4.11435 4.15134 4.33767 4.41612 4.56176 4.56818 4.62174 4.65586 4.78101 4.89178 4.97957 5.03157 5.15844 5.20192 5.24383 5.26940 5.31743 5.38609 5.43256 5.52003 5.57324 5.66941 5.79205 6.13753 6.24551 6.43067 6.85372 7.00737 7.06517 7.44258 8.90991 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.009134 C = 0.007797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.747764 B = 3064.753692 C = 3590.152526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.003 1.003 5 C -0.555 4.555 6 H 0.042 0.958 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.273 1.273 13 N -0.673 5.673 14 C 0.098 3.902 15 H 0.005 0.995 16 C -0.098 4.098 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.144 4.144 20 C 0.108 3.892 21 H 0.069 0.931 22 O -0.586 6.586 23 H 0.046 0.954 24 H 0.030 0.970 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.331 0.669 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 10.073 -8.981 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.015 0.985 5 C -0.594 4.594 6 H 0.061 0.939 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.198 1.198 13 N -0.302 5.302 14 C -0.013 4.013 15 H 0.023 0.977 16 C -0.136 4.136 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.182 4.182 20 C 0.050 3.950 21 H 0.087 0.913 22 O -0.394 6.394 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.787 9.551 -8.138 14.266 hybrid contribution 2.255 0.200 0.179 2.271 sum -4.532 9.751 -7.959 13.378 Atomic orbital electron populations 1.21556 0.96161 0.99982 1.00440 1.21359 0.94645 0.98362 0.99834 1.18884 0.91211 0.91450 0.86843 0.98474 1.22157 0.94398 1.37539 1.05336 0.93944 1.25654 1.02047 0.94913 0.95517 1.69993 1.36309 1.38995 1.09772 0.85774 0.81281 0.78049 0.77477 1.20408 1.20441 1.19797 1.60935 1.55329 1.06042 1.07897 1.21393 0.96186 0.88886 0.94808 0.97697 1.21447 0.95908 0.96075 1.00167 1.21580 1.02045 0.93913 0.98205 1.21462 0.96211 1.00808 0.96078 1.22208 0.98697 0.94852 1.02420 1.21950 0.84868 0.93945 0.94268 0.91303 1.86585 1.36840 1.74799 1.41207 0.93501 0.95122 0.92153 0.95641 0.92150 0.92906 0.85247 0.90678 0.94320 0.93587 0.90025 0.89918 0.90401 0.89145 0.93162 0.76026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 9.85 71.98 0.71 -4.48 16 2 C -0.10 -5.22 5.45 30.59 0.17 -5.05 16 3 C 0.23 11.89 1.79 44.17 0.08 11.97 16 4 H 0.00 -0.16 7.14 -2.39 -0.02 -0.18 16 5 C -0.56 -32.25 8.21 25.60 0.21 -32.04 16 6 H 0.04 2.53 7.76 -2.91 -0.02 2.50 16 7 C 0.02 1.06 5.29 84.66 0.45 1.50 16 8 N -0.91 -54.17 11.29 21.45 0.24 -53.92 16 9 Si 0.95 45.81 29.54 68.60 2.03 47.84 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.67 -29.93 5.43 -473.29 -2.57 -32.49 16 14 C 0.10 3.84 2.02 44.91 0.09 3.93 16 15 H 0.00 0.24 7.59 -2.39 -0.02 0.22 16 16 C -0.10 -3.26 5.41 30.60 0.17 -3.10 16 17 C -0.12 -3.09 5.92 30.59 0.18 -2.91 16 18 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 19 C -0.14 -3.38 5.54 30.58 0.17 -3.21 16 20 C 0.11 3.27 3.01 30.58 0.09 3.36 16 21 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 22 O -0.59 -18.90 12.46 -148.98 -1.86 -20.76 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 2.38 7.63 -2.39 -0.02 2.36 16 26 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 3.41 5.95 -2.38 -0.01 3.40 16 28 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.33 15.23 7.36 -89.69 -0.66 14.57 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.04 1.49 7.44 -2.39 -0.02 1.47 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.39 8.05 9.08 -74.05 -0.67 7.38 16 Total: -1.00 -65.75 296.29 0.03 -65.72 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.30 Total: 25.67 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 2.49 Total: -32.05 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.33 Total: -86.42 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.86 Total: -20.76 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -65.75 0.03 -65.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595528783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.017 kcal (2) G-P(sol) polarization free energy of solvation -65.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds