Wall clock time and date at job start Sun Mar 29 2020 22:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.50275 * 2 1 4 4 C 1.53120 * 109.50305 * 239.91906 * 2 1 3 5 5 C 1.53119 * 109.16316 * 297.68009 * 4 2 1 6 6 C 1.53042 * 109.27489 * 302.34351 * 5 4 2 7 7 N 1.46844 * 109.52553 * 59.17921 * 6 5 4 8 8 C 1.46898 * 111.00142 * 174.15760 * 7 6 5 9 9 C 1.50704 * 109.46865 * 67.56538 * 8 7 6 10 10 H 1.08003 * 119.99893 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99856 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99681 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99904 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47122 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47185 * 120.00158 * 13 11 9 16 16 H 1.48503 * 109.47084 * 240.00482 * 13 11 9 17 17 C 1.46843 * 111.19965 * 298.26162 * 7 6 5 18 18 H 1.09004 * 109.45180 * 301.72526 * 17 7 6 19 19 C 1.52998 * 109.46313 * 181.75433 * 17 7 6 20 20 C 1.53005 * 109.47136 * 176.81034 * 19 17 7 21 21 O 1.42899 * 109.47089 * 185.62333 * 20 19 17 22 22 H 1.08998 * 109.47574 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47344 * 300.07958 * 1 2 3 24 24 H 1.09000 * 109.46847 * 60.07674 * 1 2 3 25 25 H 1.08996 * 109.51960 * 177.77049 * 4 2 1 26 26 H 1.09004 * 109.57305 * 57.61283 * 4 2 1 27 27 H 1.08994 * 109.50321 * 182.40506 * 5 4 2 28 28 H 1.08995 * 109.54088 * 62.30111 * 5 4 2 29 29 H 1.08998 * 109.46283 * 179.19760 * 6 5 4 30 30 H 1.09004 * 109.46025 * 299.16443 * 6 5 4 31 31 H 1.09003 * 109.46811 * 187.56125 * 8 7 6 32 32 H 1.08999 * 109.47473 * 307.56536 * 8 7 6 33 33 H 0.97008 * 119.99767 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.47722 * 296.81343 * 19 17 7 35 35 H 1.09009 * 109.47313 * 56.81593 * 19 17 7 36 36 H 1.08993 * 109.47333 * 305.62801 * 20 19 17 37 37 H 1.08998 * 109.46953 * 65.62976 * 20 19 17 38 38 H 0.96703 * 113.99841 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2490 5 6 1.5757 -2.1817 -1.2111 6 6 2.0861 -2.8417 0.0719 7 7 1.5691 -2.1136 1.2376 8 6 1.9245 -2.7997 2.4870 9 6 3.4157 -2.7281 2.6927 10 1 4.0372 -2.2237 1.9675 11 6 3.9866 -3.3064 3.8065 12 7 3.2297 -3.9210 4.6892 13 14 5.8350 -3.2182 4.0611 14 1 6.4553 -2.4780 2.9330 15 1 6.1261 -2.5128 5.3350 16 1 6.3930 -4.5932 4.1179 17 6 2.0416 -0.7234 1.2478 18 1 3.1316 -0.7105 1.2538 19 6 1.5166 -0.0156 2.4985 20 6 2.0735 1.4085 2.5503 21 8 1.6907 2.0252 3.7812 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5150 0.8892 24 1 -0.3633 0.5126 -0.8907 25 1 3.1304 -0.6891 -1.2695 26 1 1.6446 -0.2375 -2.1404 27 1 1.9723 -2.7129 -2.0762 28 1 0.4865 -2.2172 -1.2301 29 1 1.7444 -3.8761 0.1089 30 1 3.1758 -2.8188 0.0834 31 1 1.4188 -2.3169 3.3232 32 1 1.6155 -3.8434 2.4290 33 1 3.6314 -4.3283 5.4727 34 1 0.4278 0.0210 2.4653 35 1 1.8349 -0.5626 3.3862 36 1 3.1609 1.3762 2.4828 37 1 1.6747 1.9851 1.7157 38 1 2.0098 2.9325 3.8825 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595702112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:55 Heat of formation + Delta-G solvation = -64.693084 kcal Electronic energy + Delta-G solvation = -17183.605065 eV Core-core repulsion = 14639.230556 eV Total energy + Delta-G solvation = -2544.374509 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21501 -36.44431 -34.08935 -32.60482 -31.97438 -28.73709 -26.63522 -26.03282 -23.70381 -23.08034 -20.92883 -20.11234 -18.05871 -17.08221 -15.99054 -15.32206 -15.21307 -14.52419 -14.34783 -13.81655 -13.54456 -13.08971 -12.78972 -12.62202 -12.11065 -11.69287 -11.55016 -11.36812 -11.01423 -10.90288 -10.89085 -10.60426 -10.38957 -10.24140 -10.21694 -9.88086 -9.69228 -9.66949 -9.40131 -9.12923 -8.38904 -7.08741 -5.99390 -4.08393 3.27083 3.35361 3.37843 4.42357 4.53129 5.07790 5.23787 5.27955 5.31397 5.42455 5.57627 5.69024 5.76829 5.88463 5.96378 5.99946 6.12325 6.18505 6.24203 6.32099 6.39483 6.43368 6.52598 6.58760 6.72576 6.83116 6.90841 7.03729 7.10005 7.35977 7.58923 7.92484 7.96626 8.13058 8.33570 8.39241 9.02354 9.58264 11.05211 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021312 B = 0.010652 C = 0.008299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.477790 B = 2627.975335 C = 3373.210341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.060 0.940 4 C -0.113 4.113 5 C -0.118 4.118 6 C 0.064 3.936 7 N -0.533 5.533 8 C 0.183 3.817 9 C -0.545 4.545 10 H 0.056 0.944 11 C 0.065 3.935 12 N -0.889 5.889 13 Si 0.885 3.115 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.106 3.894 18 H 0.045 0.955 19 C -0.114 4.114 20 C 0.079 3.921 21 O -0.574 6.574 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.036 0.964 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.038 0.962 38 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 8.674 -8.841 12.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.078 0.922 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.065 4.065 7 N -0.257 5.257 8 C 0.058 3.942 9 C -0.584 4.584 10 H 0.074 0.926 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.713 3.287 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.003 4.003 18 H 0.062 0.938 19 C -0.152 4.152 20 C 0.001 3.999 21 O -0.378 6.378 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.427 7.976 -8.618 12.232 hybrid contribution 2.409 0.481 0.217 2.466 sum -1.018 8.457 -8.401 11.964 Atomic orbital electron populations 1.21787 0.95078 1.02794 0.99847 1.21280 0.96562 0.97927 0.95066 0.92212 1.21573 1.00018 0.96265 0.97187 1.21660 1.01239 0.95272 0.97422 1.21844 0.97693 0.97082 0.89836 1.62376 1.58276 1.00894 1.04151 1.19816 0.94179 0.94070 0.86139 1.21759 0.93892 1.35767 1.07005 0.92632 1.24942 0.97678 0.95116 0.95969 1.69953 1.34947 1.36317 1.11585 0.86649 0.86231 0.77728 0.78073 1.19969 1.20960 1.21014 1.21210 0.97249 0.89704 0.92147 0.93753 1.21589 1.00827 0.92694 1.00052 1.22266 0.97970 0.94846 0.84812 1.86536 1.79467 1.31547 1.40224 0.91016 0.92967 0.94509 0.92741 0.92870 0.92850 0.91549 0.91836 0.94774 0.94458 0.95402 0.92926 0.91417 0.89134 0.94091 0.94356 0.78480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.38 37.16 0.31 -1.71 16 2 C -0.09 -1.39 2.44 -90.54 -0.22 -1.61 16 3 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 4 C -0.11 -1.65 5.51 -26.61 -0.15 -1.79 16 5 C -0.12 -1.82 5.74 -26.65 -0.15 -1.97 16 6 C 0.06 1.24 5.16 -3.83 -0.02 1.22 16 7 N -0.53 -11.21 3.98 -228.12 -0.91 -12.12 16 8 C 0.18 4.68 4.57 -4.98 -0.02 4.66 16 9 C -0.55 -14.85 7.53 -34.44 -0.26 -15.11 16 10 H 0.06 1.52 5.84 -52.48 -0.31 1.21 16 11 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 12 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 13 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 17 C 0.11 2.03 1.15 -67.72 -0.08 1.95 16 18 H 0.04 0.96 6.49 -51.93 -0.34 0.62 16 19 C -0.11 -2.21 4.46 -26.73 -0.12 -2.33 16 20 C 0.08 1.28 6.61 37.16 0.25 1.53 16 21 O -0.57 -9.29 13.66 -35.23 -0.48 -9.77 16 22 H 0.07 1.15 6.01 -51.93 -0.31 0.83 16 23 H 0.05 0.78 6.36 -51.93 -0.33 0.44 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.00 6.59 -51.93 -0.34 0.66 16 29 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 30 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 31 H 0.04 1.03 6.35 -51.93 -0.33 0.70 16 32 H 0.03 0.77 8.03 -51.93 -0.42 0.35 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 34 H 0.07 1.29 6.26 -51.93 -0.32 0.97 16 35 H 0.09 2.12 6.05 -51.92 -0.31 1.81 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.53 6.82 -51.93 -0.35 0.18 16 38 H 0.37 3.92 9.12 45.56 0.42 4.33 16 LS Contribution 283.57 15.07 4.27 4.27 Total: -1.00 -29.90 283.57 -7.30 -37.19 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.34 Total: 2.80 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -0.56 Total: -13.42 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.17 Total: -37.65 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.48 Total: -9.77 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.90 -7.30 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595702112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.499 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds