Wall clock time and date at job start Sun Mar 29 2020 22:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.50275 * 2 1 4 4 C 1.53120 * 109.50305 * 239.91906 * 2 1 3 5 5 C 1.53119 * 109.16316 * 297.68009 * 4 2 1 6 6 C 1.53042 * 109.27489 * 302.34351 * 5 4 2 7 7 N 1.46844 * 109.52553 * 59.17921 * 6 5 4 8 8 C 1.46898 * 111.00142 * 174.15760 * 7 6 5 9 9 C 1.50704 * 109.46865 * 67.56538 * 8 7 6 10 10 H 1.08003 * 119.99893 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99856 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99681 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99904 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47122 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47185 * 120.00158 * 13 11 9 16 16 H 1.48503 * 109.47084 * 240.00482 * 13 11 9 17 17 C 1.46843 * 111.19965 * 298.26162 * 7 6 5 18 18 H 1.09004 * 109.45180 * 301.72526 * 17 7 6 19 19 C 1.52998 * 109.46313 * 181.75433 * 17 7 6 20 20 C 1.53005 * 109.47136 * 176.81034 * 19 17 7 21 21 O 1.42899 * 109.47089 * 185.62333 * 20 19 17 22 22 H 1.08998 * 109.47574 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47344 * 300.07958 * 1 2 3 24 24 H 1.09000 * 109.46847 * 60.07674 * 1 2 3 25 25 H 1.08996 * 109.51960 * 177.77049 * 4 2 1 26 26 H 1.09004 * 109.57305 * 57.61283 * 4 2 1 27 27 H 1.08994 * 109.50321 * 182.40506 * 5 4 2 28 28 H 1.08995 * 109.54088 * 62.30111 * 5 4 2 29 29 H 1.08998 * 109.46283 * 179.19760 * 6 5 4 30 30 H 1.09004 * 109.46025 * 299.16443 * 6 5 4 31 31 H 1.09003 * 109.46811 * 187.56125 * 8 7 6 32 32 H 1.08999 * 109.47473 * 307.56536 * 8 7 6 33 33 H 0.97008 * 119.99767 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.47722 * 296.81343 * 19 17 7 35 35 H 1.09009 * 109.47313 * 56.81593 * 19 17 7 36 36 H 1.08993 * 109.47333 * 305.62801 * 20 19 17 37 37 H 1.08998 * 109.46953 * 65.62976 * 20 19 17 38 38 H 0.96703 * 113.99841 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2490 5 6 1.5757 -2.1817 -1.2111 6 6 2.0861 -2.8417 0.0719 7 7 1.5691 -2.1136 1.2376 8 6 1.9245 -2.7997 2.4870 9 6 3.4157 -2.7281 2.6927 10 1 4.0372 -2.2237 1.9675 11 6 3.9866 -3.3064 3.8065 12 7 3.2297 -3.9210 4.6892 13 14 5.8350 -3.2182 4.0611 14 1 6.4553 -2.4780 2.9330 15 1 6.1261 -2.5128 5.3350 16 1 6.3930 -4.5932 4.1179 17 6 2.0416 -0.7234 1.2478 18 1 3.1316 -0.7105 1.2538 19 6 1.5166 -0.0156 2.4985 20 6 2.0735 1.4085 2.5503 21 8 1.6907 2.0252 3.7812 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5150 0.8892 24 1 -0.3633 0.5126 -0.8907 25 1 3.1304 -0.6891 -1.2695 26 1 1.6446 -0.2375 -2.1404 27 1 1.9723 -2.7129 -2.0762 28 1 0.4865 -2.2172 -1.2301 29 1 1.7444 -3.8761 0.1089 30 1 3.1758 -2.8188 0.0834 31 1 1.4188 -2.3169 3.3232 32 1 1.6155 -3.8434 2.4290 33 1 3.6314 -4.3283 5.4727 34 1 0.4278 0.0210 2.4653 35 1 1.8349 -0.5626 3.3862 36 1 3.1609 1.3762 2.4828 37 1 1.6747 1.9851 1.7157 38 1 2.0098 2.9325 3.8825 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595702112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:54 Heat of formation + Delta-G solvation = -86.651846 kcal Electronic energy + Delta-G solvation = -17184.557268 eV Core-core repulsion = 14639.230556 eV Total energy + Delta-G solvation = -2545.326713 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71561 -37.74228 -35.85346 -34.03650 -33.92352 -30.15502 -28.57644 -27.34132 -25.54316 -24.49270 -22.61224 -21.57128 -19.66760 -18.45261 -17.90602 -16.98861 -16.56350 -16.16735 -16.11351 -15.15165 -15.02005 -14.54500 -14.40317 -14.22459 -13.72878 -13.22438 -13.08840 -12.97308 -12.74385 -12.67710 -12.28168 -12.17400 -12.06640 -11.94220 -11.79221 -11.52855 -11.30102 -11.07891 -10.80074 -10.64584 -10.54798 -8.93617 -8.13890 -6.34060 1.32092 1.33179 1.44317 2.35085 3.09605 3.17730 3.63272 3.92238 4.03071 4.11890 4.23131 4.39334 4.43311 4.53633 4.59759 4.71297 4.77636 4.83194 4.93953 4.96435 5.09565 5.14293 5.18874 5.23085 5.28238 5.34947 5.42168 5.43152 5.51611 5.54217 5.76975 5.77954 6.08851 6.31706 6.66010 6.88270 6.97485 7.37068 8.87309 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021312 B = 0.010652 C = 0.008299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.477790 B = 2627.975335 C = 3373.210341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.111 4.111 5 C -0.109 4.109 6 C 0.062 3.938 7 N -0.530 5.530 8 C 0.199 3.801 9 C -0.546 4.546 10 H 0.053 0.947 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.953 3.047 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.277 1.277 17 C 0.108 3.892 18 H 0.018 0.982 19 C -0.110 4.110 20 C 0.087 3.913 21 O -0.595 6.595 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.012 0.988 31 H 0.009 0.991 32 H -0.003 1.003 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.187 10.607 -10.984 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.102 0.898 4 C -0.148 4.148 5 C -0.147 4.147 6 C -0.067 4.067 7 N -0.254 5.254 8 C 0.072 3.928 9 C -0.586 4.586 10 H 0.071 0.929 11 C -0.189 4.189 12 N -0.567 5.567 13 Si 0.778 3.222 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.203 1.203 17 C -0.001 4.001 18 H 0.036 0.964 19 C -0.148 4.148 20 C 0.009 3.991 21 O -0.404 6.404 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.030 0.970 31 H 0.027 0.973 32 H 0.015 0.985 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.986 9.937 -10.780 14.962 hybrid contribution 2.221 -0.114 0.903 2.400 sum -0.765 9.823 -9.877 13.951 Atomic orbital electron populations 1.21737 0.94101 1.02095 1.01106 1.21288 0.97262 0.98598 0.93172 0.89845 1.21597 0.99941 0.95417 0.97889 1.21611 1.01644 0.96014 0.95389 1.21930 0.96389 0.97098 0.91259 1.62332 1.58315 1.01963 1.02808 1.19419 0.93210 0.92368 0.87753 1.21949 0.94639 1.35141 1.06824 0.92854 1.25795 1.02467 0.94846 0.95764 1.70079 1.37005 1.37365 1.12202 0.85588 0.80504 0.77984 0.78133 1.19102 1.20525 1.20305 1.21273 0.95678 0.88705 0.94411 0.96446 1.21494 1.00830 0.94550 0.97928 1.22140 0.97754 0.93156 0.86069 1.86474 1.79841 1.33717 1.40326 0.92730 0.93480 0.91460 0.93131 0.89406 0.90526 0.90792 0.93014 0.96967 0.97294 0.98491 0.92762 0.91465 0.94414 0.94246 0.90864 0.75540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.38 71.98 0.60 -2.89 16 2 C -0.08 -2.38 2.44 -10.74 -0.03 -2.40 16 3 H 0.08 2.01 6.68 -2.39 -0.02 1.99 16 4 C -0.11 -2.83 5.51 30.67 0.17 -2.66 16 5 C -0.11 -3.09 5.74 30.65 0.18 -2.91 16 6 C 0.06 2.40 5.16 86.33 0.45 2.85 16 7 N -0.53 -22.98 3.98 -875.64 -3.48 -26.47 16 8 C 0.20 10.80 4.57 85.56 0.39 11.19 16 9 C -0.55 -30.97 7.53 25.60 0.19 -30.77 16 10 H 0.05 3.00 5.84 -2.91 -0.02 2.98 16 11 C 0.01 0.60 5.46 84.66 0.46 1.06 16 12 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 13 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 C 0.11 4.14 1.15 44.94 0.05 4.19 16 18 H 0.02 0.77 6.49 -2.38 -0.02 0.75 16 19 C -0.11 -4.34 4.46 30.60 0.14 -4.20 16 20 C 0.09 2.68 6.61 71.98 0.48 3.16 16 21 O -0.60 -18.52 13.66 -148.98 -2.04 -20.56 16 22 H 0.05 1.62 6.01 -2.39 -0.01 1.61 16 23 H 0.05 1.28 6.36 -2.39 -0.02 1.26 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 2.03 6.59 -2.39 -0.02 2.01 16 29 H 0.05 2.08 8.04 -2.39 -0.02 2.07 16 30 H 0.01 0.52 7.13 -2.38 -0.02 0.50 16 31 H 0.01 0.54 6.35 -2.39 -0.02 0.52 16 32 H 0.00 -0.18 8.03 -2.39 -0.02 -0.20 16 33 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 34 H 0.07 2.60 6.26 -2.39 -0.01 2.58 16 35 H 0.04 1.86 6.05 -2.38 -0.01 1.85 16 36 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.78 6.82 -2.39 -0.02 1.76 16 38 H 0.40 7.51 9.12 -74.06 -0.68 6.83 16 Total: -1.00 -67.46 283.57 0.24 -67.23 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.37 Total: 12.55 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 3.08 Total: -23.41 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -3.20 Total: -82.94 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -2.04 Total: -20.56 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.46 0.24 -67.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595702112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.424 kcal (2) G-P(sol) polarization free energy of solvation -67.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds