Wall clock time and date at job start Sun Mar 29 2020 22:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.53351 * 2 1 4 4 C 1.53123 * 109.50457 * 120.09591 * 2 1 3 5 5 C 1.53126 * 109.15421 * 62.29056 * 4 2 1 6 6 C 1.53037 * 109.28086 * 57.65547 * 5 4 2 7 7 N 1.46841 * 109.52120 * 300.81943 * 6 5 4 8 8 C 1.46907 * 110.99808 * 185.84159 * 7 6 5 9 9 C 1.50702 * 109.46835 * 299.29343 * 8 7 6 10 10 H 1.07995 * 120.00231 * 354.26653 * 9 8 7 11 11 C 1.37879 * 119.99559 * 174.26121 * 9 8 7 12 12 N 1.31507 * 120.00452 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99443 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47004 * 90.00701 * 13 11 9 15 15 H 1.48504 * 109.46966 * 210.00187 * 13 11 9 16 16 H 1.48491 * 109.47453 * 330.00209 * 13 11 9 17 17 C 1.46845 * 111.20115 * 61.74382 * 7 6 5 18 18 H 1.08995 * 109.46109 * 58.27250 * 17 7 6 19 19 C 1.53000 * 109.45176 * 178.24790 * 17 7 6 20 20 C 1.53003 * 109.46794 * 184.01636 * 19 17 7 21 21 O 1.42904 * 109.46938 * 181.54097 * 20 19 17 22 22 H 1.08999 * 109.47300 * 299.90088 * 1 2 3 23 23 H 1.09003 * 109.47203 * 59.90286 * 1 2 3 24 24 H 1.09004 * 109.47126 * 179.89769 * 1 2 3 25 25 H 1.09004 * 109.52371 * 182.19192 * 4 2 1 26 26 H 1.09000 * 109.52264 * 302.38679 * 4 2 1 27 27 H 1.09007 * 109.49960 * 177.59545 * 5 4 2 28 28 H 1.08999 * 109.50426 * 297.71191 * 5 4 2 29 29 H 1.09001 * 109.46038 * 180.80102 * 6 5 4 30 30 H 1.08996 * 109.46056 * 60.83301 * 6 5 4 31 31 H 1.09004 * 109.46856 * 59.29551 * 8 7 6 32 32 H 1.08999 * 109.46925 * 179.29258 * 8 7 6 33 33 H 0.96998 * 120.00457 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.47208 * 304.01251 * 19 17 7 35 35 H 1.08999 * 109.47629 * 64.01985 * 19 17 7 36 36 H 1.08997 * 109.47422 * 301.54835 * 20 19 17 37 37 H 1.09000 * 109.47017 * 61.54455 * 20 19 17 38 38 H 0.96700 * 113.99807 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7238 1.2488 5 6 1.5750 -2.1818 1.2107 6 6 2.0847 -2.8420 -0.0725 7 7 1.5677 -2.1134 -1.2379 8 6 1.9224 -2.7995 -2.4875 9 6 3.4225 -2.8763 -2.6099 10 1 4.0496 -2.3776 -1.8859 11 6 3.9942 -3.5833 -3.6464 12 7 3.2306 -4.1902 -4.5284 13 14 5.8536 -3.6778 -3.7986 14 1 6.3523 -4.8581 -3.0478 15 1 6.2271 -3.8078 -5.2300 16 1 6.4595 -2.4430 -3.2391 17 6 2.0410 -0.7234 -1.2480 18 1 3.1309 -0.7110 -1.2544 19 6 1.5158 -0.0154 -2.4986 20 6 2.0897 1.4015 -2.5613 21 8 1.5710 2.0751 -3.7100 22 1 -0.3634 0.5123 0.8909 23 1 -0.3634 0.5154 -0.8891 24 1 -0.3633 -1.0277 -0.0018 25 1 3.1306 -0.6901 1.2690 26 1 1.6442 -0.2375 2.1398 27 1 1.9716 -2.7134 2.0757 28 1 0.4857 -2.2162 1.2297 29 1 1.7424 -3.8762 -0.1095 30 1 3.1743 -2.8195 -0.0843 31 1 1.5064 -3.8070 -2.4795 32 1 1.5166 -2.2456 -3.3340 33 1 3.6328 -4.6873 -5.2578 34 1 1.8209 -0.5706 -3.3856 35 1 0.4277 0.0349 -2.4577 36 1 1.8077 1.9480 -1.6614 37 1 3.1764 1.3506 -2.6299 38 1 1.8934 2.9808 -3.8138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595702114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:58 Heat of formation + Delta-G solvation = -63.860499 kcal Electronic energy + Delta-G solvation = -17145.174200 eV Core-core repulsion = 14600.835794 eV Total energy + Delta-G solvation = -2544.338406 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.22275 -36.47880 -34.09054 -32.62029 -31.98133 -28.75543 -26.62612 -26.04116 -23.69489 -23.14651 -20.90541 -20.12420 -18.05284 -17.09919 -16.00061 -15.32305 -15.25624 -14.58266 -14.34110 -13.83189 -13.56074 -13.08493 -12.80932 -12.62066 -12.11005 -11.72221 -11.54223 -11.38121 -11.01663 -10.91161 -10.89612 -10.63532 -10.35178 -10.26118 -10.19245 -9.92798 -9.72629 -9.64375 -9.44420 -9.11723 -8.38216 -7.09031 -5.99589 -4.08729 3.27366 3.34600 3.36729 4.41846 4.49451 5.06930 5.22234 5.27994 5.30905 5.42236 5.55434 5.66908 5.76705 5.88126 5.93782 5.99638 6.10925 6.17073 6.25364 6.32037 6.38721 6.42038 6.51978 6.59680 6.73143 6.84770 6.90783 6.99758 7.05828 7.35656 7.58739 7.89622 7.95241 8.13218 8.33729 8.38898 9.02006 9.57763 11.04894 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.010327 C = 0.008101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.293363 B = 2710.658952 C = 3455.493220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.060 0.940 4 C -0.113 4.113 5 C -0.119 4.119 6 C 0.066 3.934 7 N -0.532 5.532 8 C 0.181 3.819 9 C -0.546 4.546 10 H 0.055 0.945 11 C 0.065 3.935 12 N -0.890 5.890 13 Si 0.886 3.114 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.104 3.896 18 H 0.042 0.958 19 C -0.116 4.116 20 C 0.078 3.922 21 O -0.574 6.574 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.035 0.965 33 H 0.262 0.738 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 9.148 8.475 12.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.078 0.922 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.063 4.063 7 N -0.257 5.257 8 C 0.056 3.944 9 C -0.585 4.585 10 H 0.073 0.927 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.714 3.286 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.005 4.005 18 H 0.060 0.940 19 C -0.153 4.153 20 C 0.000 4.000 21 O -0.379 6.379 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.362 8.449 8.264 12.288 hybrid contribution 2.452 0.352 -0.159 2.482 sum -0.910 8.801 8.106 11.999 Atomic orbital electron populations 1.21791 0.95041 1.02824 0.99871 1.21272 0.96590 0.97889 0.95011 0.92189 1.21577 1.00006 0.96304 0.97153 1.21677 1.01224 0.95236 0.97531 1.21821 0.97844 0.97073 0.89546 1.62383 1.58253 1.00743 1.04278 1.19853 0.94094 0.94311 0.86130 1.21725 0.93224 1.32485 1.11084 0.92723 1.24943 0.97711 0.95317 0.95735 1.69934 1.34845 1.33513 1.14542 0.86699 0.86319 0.78335 0.77273 1.20711 1.21160 1.20074 1.21204 0.97094 0.89945 0.92243 0.93984 1.21632 1.01093 0.92735 0.99864 1.22286 0.96944 0.94139 0.86654 1.86521 1.72993 1.30456 1.47885 0.94483 0.92951 0.90986 0.92738 0.92869 0.92842 0.91580 0.91781 0.94565 0.94905 0.94675 0.92859 0.89427 0.91167 0.94178 0.94044 0.78408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.38 37.16 0.31 -1.71 16 2 C -0.09 -1.37 2.46 -90.54 -0.22 -1.60 16 3 H 0.06 0.85 6.54 -51.93 -0.34 0.51 16 4 C -0.11 -1.65 5.51 -26.60 -0.15 -1.79 16 5 C -0.12 -1.84 5.74 -26.65 -0.15 -2.00 16 6 C 0.07 1.28 5.05 -3.84 -0.02 1.26 16 7 N -0.53 -11.21 3.97 -228.12 -0.91 -12.12 16 8 C 0.18 4.63 4.69 -4.97 -0.02 4.61 16 9 C -0.55 -14.88 7.71 -34.44 -0.27 -15.15 16 10 H 0.05 1.49 5.86 -52.49 -0.31 1.18 16 11 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 12 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 13 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.10 1.98 1.25 -67.72 -0.08 1.90 16 18 H 0.04 0.90 6.77 -51.93 -0.35 0.55 16 19 C -0.12 -2.20 4.52 -26.73 -0.12 -2.32 16 20 C 0.08 1.23 6.82 37.16 0.25 1.49 16 21 O -0.57 -9.00 13.66 -35.23 -0.48 -9.48 16 22 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.78 6.34 -51.93 -0.33 0.45 16 24 H 0.07 1.15 6.01 -51.93 -0.31 0.84 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.07 1.01 6.58 -51.93 -0.34 0.66 16 29 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 30 H 0.04 0.77 6.82 -51.93 -0.35 0.42 16 31 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.04 0.96 5.92 -51.93 -0.31 0.65 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.09 1.99 6.01 -51.93 -0.31 1.68 16 35 H 0.07 1.32 6.21 -51.93 -0.32 1.00 16 36 H 0.04 0.55 6.48 -51.93 -0.34 0.22 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.37 3.76 9.12 45.56 0.42 4.18 16 LS Contribution 283.32 15.07 4.27 4.27 Total: -1.00 -29.81 283.32 -7.26 -37.07 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.29 Total: 2.81 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.57 Total: -13.57 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.17 Total: -37.63 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.48 Total: -9.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.81 -7.26 -37.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595702114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.788 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds