Wall clock time and date at job start Sun Mar 29 2020 22:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.53351 * 2 1 4 4 C 1.53123 * 109.50457 * 120.09591 * 2 1 3 5 5 C 1.53126 * 109.15421 * 62.29056 * 4 2 1 6 6 C 1.53037 * 109.28086 * 57.65547 * 5 4 2 7 7 N 1.46841 * 109.52120 * 300.81943 * 6 5 4 8 8 C 1.46907 * 110.99808 * 185.84159 * 7 6 5 9 9 C 1.50702 * 109.46835 * 299.29343 * 8 7 6 10 10 H 1.07995 * 120.00231 * 354.26653 * 9 8 7 11 11 C 1.37879 * 119.99559 * 174.26121 * 9 8 7 12 12 N 1.31507 * 120.00452 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99443 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47004 * 90.00701 * 13 11 9 15 15 H 1.48504 * 109.46966 * 210.00187 * 13 11 9 16 16 H 1.48491 * 109.47453 * 330.00209 * 13 11 9 17 17 C 1.46845 * 111.20115 * 61.74382 * 7 6 5 18 18 H 1.08995 * 109.46109 * 58.27250 * 17 7 6 19 19 C 1.53000 * 109.45176 * 178.24790 * 17 7 6 20 20 C 1.53003 * 109.46794 * 184.01636 * 19 17 7 21 21 O 1.42904 * 109.46938 * 181.54097 * 20 19 17 22 22 H 1.08999 * 109.47300 * 299.90088 * 1 2 3 23 23 H 1.09003 * 109.47203 * 59.90286 * 1 2 3 24 24 H 1.09004 * 109.47126 * 179.89769 * 1 2 3 25 25 H 1.09004 * 109.52371 * 182.19192 * 4 2 1 26 26 H 1.09000 * 109.52264 * 302.38679 * 4 2 1 27 27 H 1.09007 * 109.49960 * 177.59545 * 5 4 2 28 28 H 1.08999 * 109.50426 * 297.71191 * 5 4 2 29 29 H 1.09001 * 109.46038 * 180.80102 * 6 5 4 30 30 H 1.08996 * 109.46056 * 60.83301 * 6 5 4 31 31 H 1.09004 * 109.46856 * 59.29551 * 8 7 6 32 32 H 1.08999 * 109.46925 * 179.29258 * 8 7 6 33 33 H 0.96998 * 120.00457 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.47208 * 304.01251 * 19 17 7 35 35 H 1.08999 * 109.47629 * 64.01985 * 19 17 7 36 36 H 1.08997 * 109.47422 * 301.54835 * 20 19 17 37 37 H 1.09000 * 109.47017 * 61.54455 * 20 19 17 38 38 H 0.96700 * 113.99807 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7238 1.2488 5 6 1.5750 -2.1818 1.2107 6 6 2.0847 -2.8420 -0.0725 7 7 1.5677 -2.1134 -1.2379 8 6 1.9224 -2.7995 -2.4875 9 6 3.4225 -2.8763 -2.6099 10 1 4.0496 -2.3776 -1.8859 11 6 3.9942 -3.5833 -3.6464 12 7 3.2306 -4.1902 -4.5284 13 14 5.8536 -3.6778 -3.7986 14 1 6.3523 -4.8581 -3.0478 15 1 6.2271 -3.8078 -5.2300 16 1 6.4595 -2.4430 -3.2391 17 6 2.0410 -0.7234 -1.2480 18 1 3.1309 -0.7110 -1.2544 19 6 1.5158 -0.0154 -2.4986 20 6 2.0897 1.4015 -2.5613 21 8 1.5710 2.0751 -3.7100 22 1 -0.3634 0.5123 0.8909 23 1 -0.3634 0.5154 -0.8891 24 1 -0.3633 -1.0277 -0.0018 25 1 3.1306 -0.6901 1.2690 26 1 1.6442 -0.2375 2.1398 27 1 1.9716 -2.7134 2.0757 28 1 0.4857 -2.2162 1.2297 29 1 1.7424 -3.8762 -0.1095 30 1 3.1743 -2.8195 -0.0843 31 1 1.5064 -3.8070 -2.4795 32 1 1.5166 -2.2456 -3.3340 33 1 3.6328 -4.6873 -5.2578 34 1 1.8209 -0.5706 -3.3856 35 1 0.4277 0.0349 -2.4577 36 1 1.8077 1.9480 -1.6614 37 1 3.1764 1.3506 -2.6299 38 1 1.8934 2.9808 -3.8138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595702114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:58 Heat of formation + Delta-G solvation = -85.693694 kcal Electronic energy + Delta-G solvation = -17146.120959 eV Core-core repulsion = 14600.835794 eV Total energy + Delta-G solvation = -2545.285164 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.71899 -37.74740 -35.85490 -34.03075 -33.94036 -30.16337 -28.57462 -27.33878 -25.54618 -24.53384 -22.59227 -21.57333 -19.64876 -18.45494 -17.91210 -16.96770 -16.61732 -16.22230 -16.09153 -15.15639 -15.01592 -14.55867 -14.40727 -14.21828 -13.71607 -13.26615 -13.06987 -12.94197 -12.76058 -12.68441 -12.27884 -12.10452 -12.08787 -11.96227 -11.81857 -11.55920 -11.29756 -11.08282 -10.82180 -10.64166 -10.51495 -8.93791 -8.13709 -6.34193 1.33150 1.33605 1.43871 2.35197 3.09030 3.16909 3.62979 3.90491 4.03301 4.11153 4.21474 4.38809 4.42946 4.53251 4.58305 4.70320 4.77416 4.83889 4.92964 4.95729 5.10747 5.14397 5.19001 5.21649 5.29635 5.34788 5.41215 5.43535 5.49047 5.52833 5.76823 5.78065 6.09139 6.31776 6.65967 6.88152 6.96472 7.36836 8.87170 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.010327 C = 0.008101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.293363 B = 2710.658952 C = 3455.493220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.084 0.916 4 C -0.111 4.111 5 C -0.110 4.110 6 C 0.064 3.936 7 N -0.530 5.530 8 C 0.196 3.804 9 C -0.549 4.549 10 H 0.053 0.947 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.953 3.047 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.268 1.268 17 C 0.106 3.894 18 H 0.016 0.984 19 C -0.112 4.112 20 C 0.086 3.914 21 O -0.594 6.594 22 H 0.066 0.934 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.014 0.986 31 H -0.001 1.001 32 H 0.011 0.989 33 H 0.264 0.736 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 11.061 10.588 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.102 0.898 4 C -0.148 4.148 5 C -0.147 4.147 6 C -0.065 4.065 7 N -0.254 5.254 8 C 0.070 3.930 9 C -0.588 4.588 10 H 0.071 0.929 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.778 3.222 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.193 1.193 17 C -0.003 4.003 18 H 0.034 0.966 19 C -0.150 4.150 20 C 0.008 3.992 21 O -0.402 6.402 22 H 0.085 0.915 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.017 0.983 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.857 10.392 10.396 14.974 hybrid contribution 2.242 -0.231 -0.839 2.405 sum -0.615 10.161 9.557 13.963 Atomic orbital electron populations 1.21739 0.94122 1.02077 1.01110 1.21285 0.97244 0.98591 0.93132 0.89764 1.21600 0.99962 0.95365 0.97895 1.21624 1.01609 0.96057 0.95443 1.21892 0.96526 0.96955 0.91089 1.62336 1.58294 1.01868 1.02883 1.19468 0.93142 0.92563 0.87857 1.21929 0.94010 1.32006 1.10848 0.92892 1.25802 1.02609 0.95041 0.95427 1.70065 1.36918 1.34434 1.15230 0.85629 0.80446 0.78680 0.77400 1.19861 1.20709 1.19262 1.21276 0.95593 0.88848 0.94551 0.96571 1.21537 1.01104 0.94561 0.97795 1.22138 0.96442 0.92468 0.88133 1.86460 1.73349 1.32534 1.47896 0.91470 0.93471 0.92754 0.93070 0.89415 0.90588 0.90857 0.93270 0.96756 0.98258 0.97124 0.92731 0.94376 0.91264 0.90867 0.94306 0.75478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 8.38 71.98 0.60 -2.90 16 2 C -0.08 -2.35 2.46 -10.74 -0.03 -2.38 16 3 H 0.08 2.01 6.54 -2.39 -0.02 1.99 16 4 C -0.11 -2.83 5.51 30.68 0.17 -2.66 16 5 C -0.11 -3.15 5.74 30.65 0.18 -2.97 16 6 C 0.06 2.52 5.05 86.33 0.44 2.95 16 7 N -0.53 -23.00 3.97 -875.65 -3.48 -26.48 16 8 C 0.20 10.64 4.69 85.56 0.40 11.04 16 9 C -0.55 -31.09 7.71 25.60 0.20 -30.89 16 10 H 0.05 2.97 5.86 -2.91 -0.02 2.95 16 11 C 0.01 0.60 5.46 84.66 0.46 1.06 16 12 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 13 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 17 C 0.11 4.03 1.25 44.94 0.06 4.09 16 18 H 0.02 0.70 6.77 -2.39 -0.02 0.69 16 19 C -0.11 -4.34 4.52 30.60 0.14 -4.20 16 20 C 0.09 2.61 6.82 71.98 0.49 3.10 16 21 O -0.59 -17.78 13.66 -148.98 -2.04 -19.81 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.05 1.28 6.34 -2.39 -0.02 1.27 16 24 H 0.05 1.62 6.01 -2.38 -0.01 1.61 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.07 2.04 6.58 -2.39 -0.02 2.02 16 29 H 0.05 2.03 8.12 -2.39 -0.02 2.01 16 30 H 0.01 0.62 6.82 -2.39 -0.02 0.60 16 31 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.01 0.63 5.92 -2.39 -0.01 0.62 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.04 1.83 6.01 -2.39 -0.01 1.82 16 35 H 0.07 2.64 6.21 -2.39 -0.01 2.63 16 36 H 0.07 1.75 6.48 -2.39 -0.02 1.74 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.40 7.12 9.12 -74.06 -0.68 6.45 16 Total: -1.00 -67.09 283.32 0.27 -66.82 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.37 Total: 12.65 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 3.10 Total: -23.77 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -3.19 Total: -82.84 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -2.04 Total: -19.81 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.09 0.27 -66.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595702114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.871 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds