Wall clock time and date at job start Sun Mar 29 2020 22:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.50093 * 2 1 4 4 C 1.53118 * 109.53333 * 120.09939 * 2 1 3 5 5 C 1.53112 * 109.16039 * 177.61592 * 4 2 1 6 6 C 1.53033 * 109.27818 * 302.34203 * 5 4 2 7 7 N 1.46841 * 109.52390 * 59.17928 * 6 5 4 8 8 C 1.46905 * 111.00342 * 174.15834 * 7 6 5 9 9 C 1.50695 * 109.47132 * 289.56744 * 8 7 6 10 10 H 1.07993 * 120.00056 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99519 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00552 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99856 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46925 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47210 * 119.99542 * 13 11 9 16 16 H 1.48497 * 109.47386 * 240.00184 * 13 11 9 17 17 C 1.46841 * 111.19875 * 298.25846 * 7 6 5 18 18 H 1.08999 * 109.46453 * 301.72786 * 17 7 6 19 19 C 1.53007 * 109.46783 * 181.74714 * 17 7 6 20 20 C 1.53003 * 109.46820 * 303.57993 * 19 17 7 21 21 O 1.42899 * 109.47249 * 184.78144 * 20 19 17 22 22 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47005 * 300.08200 * 1 2 3 24 24 H 1.08997 * 109.46900 * 60.08329 * 1 2 3 25 25 H 1.09008 * 109.52039 * 297.51889 * 4 2 1 26 26 H 1.08993 * 109.53045 * 57.64019 * 4 2 1 27 27 H 1.09001 * 109.50606 * 62.28430 * 5 4 2 28 28 H 1.09004 * 109.50886 * 182.39659 * 5 4 2 29 29 H 1.08997 * 109.46166 * 299.16111 * 6 5 4 30 30 H 1.09007 * 109.46034 * 179.19348 * 6 5 4 31 31 H 1.09008 * 109.46839 * 49.56481 * 8 7 6 32 32 H 1.08996 * 109.47318 * 169.55727 * 8 7 6 33 33 H 0.97000 * 120.00184 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.46744 * 63.57109 * 19 17 7 35 35 H 1.08991 * 109.47442 * 183.58282 * 19 17 7 36 36 H 1.09001 * 109.47094 * 304.78642 * 20 19 17 37 37 H 1.09009 * 109.47038 * 64.78622 * 20 19 17 38 38 H 0.96692 * 114.00352 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7237 1.2485 5 6 3.5719 -0.7710 1.2100 6 6 4.0237 -1.4716 -0.0733 7 7 3.5093 -0.7410 -1.2385 8 6 4.0372 -1.3043 -2.4883 9 6 5.5053 -0.9842 -2.6028 10 1 5.9969 -0.4186 -1.8253 11 6 6.2209 -1.4136 -3.7004 12 7 5.6223 -2.1029 -4.6471 13 14 8.0406 -1.0163 -3.8428 14 1 8.4711 -0.2351 -2.6555 15 1 8.8189 -2.2790 -3.9139 16 1 8.2784 -0.2184 -5.0724 17 6 2.0410 -0.7231 -1.2482 18 1 1.6654 -1.7463 -1.2545 19 6 1.5482 0.0085 -2.4984 20 6 2.1480 1.4156 -2.5355 21 8 1.6019 2.1372 -3.6414 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5151 0.8892 24 1 -0.3633 0.5125 -0.8907 25 1 1.7164 -0.1871 2.1397 26 1 1.6457 -1.7388 1.2695 27 1 3.9680 0.2444 1.2291 28 1 3.9409 -1.3223 2.0750 29 1 3.6388 -2.4913 -0.0851 30 1 5.1129 -1.4942 -0.1106 31 1 3.9002 -2.3857 -2.4858 32 1 3.5040 -0.8726 -3.3352 33 1 6.1257 -2.4046 -5.4195 34 1 1.8577 -0.5418 -3.3870 35 1 0.4608 0.0776 -2.4741 36 1 1.9096 1.9367 -1.6083 37 1 3.2303 1.3465 -2.6456 38 1 1.9379 3.0399 -3.7266 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595702115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:00 Heat of formation + Delta-G solvation = -65.357370 kcal Electronic energy + Delta-G solvation = -17026.909265 eV Core-core repulsion = 14482.505950 eV Total energy + Delta-G solvation = -2544.403315 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.19784 -36.20828 -34.13165 -32.82270 -32.15652 -28.88649 -26.88388 -25.85934 -23.74600 -22.84830 -20.54566 -20.42438 -18.54477 -16.90291 -16.35165 -15.20206 -14.93254 -14.52424 -14.20713 -14.04137 -13.44140 -13.30515 -12.85385 -12.39777 -12.15479 -12.00807 -11.69108 -11.44864 -11.16542 -11.10738 -10.89386 -10.79689 -10.57736 -10.35669 -10.14482 -9.97811 -9.82675 -9.39054 -9.17468 -9.11068 -8.37940 -7.18490 -5.99871 -4.00776 3.31501 3.39104 3.43407 4.43042 4.72002 4.85226 5.10921 5.14861 5.29179 5.35395 5.53934 5.71843 5.75656 5.81748 5.87078 5.91174 6.06262 6.12197 6.15654 6.19443 6.25775 6.30087 6.36525 6.50758 6.59375 6.73740 6.77058 6.80760 6.85349 7.36770 7.40758 7.84670 8.10666 8.16175 8.26389 8.59643 9.07440 9.63089 11.10737 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025545 B = 0.009029 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.855791 B = 3100.338099 C = 3779.664221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.077 0.923 4 C -0.112 4.112 5 C -0.117 4.117 6 C 0.065 3.935 7 N -0.531 5.531 8 C 0.185 3.815 9 C -0.504 4.504 10 H 0.062 0.938 11 C 0.054 3.946 12 N -0.898 5.898 13 Si 0.895 3.105 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.093 3.907 18 H 0.032 0.968 19 C -0.113 4.113 20 C 0.082 3.918 21 O -0.585 6.585 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.017 0.983 30 H 0.081 0.919 31 H -0.012 1.012 32 H 0.041 0.959 33 H 0.260 0.740 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 4.766 8.953 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.063 4.063 7 N -0.256 5.256 8 C 0.061 3.939 9 C -0.542 4.542 10 H 0.081 0.919 11 C -0.147 4.147 12 N -0.537 5.537 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.016 4.016 18 H 0.050 0.950 19 C -0.150 4.150 20 C 0.005 3.995 21 O -0.389 6.389 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.006 0.994 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.747 4.578 8.728 12.536 hybrid contribution 1.062 -0.288 -0.163 1.112 sum -6.685 4.290 8.565 11.682 Atomic orbital electron populations 1.21889 0.95777 1.01473 1.01404 1.21243 0.94438 1.00362 0.94535 0.90494 1.21611 0.96294 0.99932 0.97152 1.21624 0.95085 1.01404 0.97414 1.21923 1.00968 0.93742 0.89716 1.62072 1.04195 1.54957 1.04392 1.19868 0.95535 0.92692 0.85855 1.21187 0.93735 1.33857 1.05449 0.91935 1.24987 0.98482 0.95379 0.95824 1.69966 1.36125 1.37763 1.09879 0.86490 0.85254 0.77964 0.77985 1.19725 1.21191 1.21081 1.21482 0.90267 0.96538 0.93325 0.95032 1.21612 0.99477 0.95302 0.98637 1.22212 0.98886 0.91600 0.86795 1.86417 1.70850 1.29755 1.51922 0.93069 0.93122 0.92267 0.92695 0.92749 0.91564 0.92587 0.96487 0.90061 0.99433 0.94101 0.93043 0.90560 0.91912 0.94498 0.91143 0.78292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.87 37.16 0.33 -1.52 16 2 C -0.09 -1.28 2.15 -90.54 -0.19 -1.48 16 3 H 0.08 1.17 6.39 -51.93 -0.33 0.84 16 4 C -0.11 -1.56 5.29 -26.61 -0.14 -1.70 16 5 C -0.12 -1.80 6.09 -26.66 -0.16 -1.96 16 6 C 0.06 1.25 5.30 -3.84 -0.02 1.23 16 7 N -0.53 -11.14 3.69 -228.13 -0.84 -11.98 16 8 C 0.19 4.77 4.12 -4.98 -0.02 4.75 16 9 C -0.50 -13.99 8.48 -34.44 -0.29 -14.28 16 10 H 0.06 1.73 7.44 -52.49 -0.39 1.34 16 11 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 13 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 C 0.09 1.68 1.65 -67.72 -0.11 1.57 16 18 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 19 C -0.11 -2.06 4.54 -26.73 -0.12 -2.18 16 20 C 0.08 1.46 6.52 37.16 0.24 1.70 16 21 O -0.58 -9.97 13.66 -35.23 -0.48 -10.45 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.75 6.37 -51.93 -0.33 0.42 16 25 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 1.70 7.04 -51.92 -0.37 1.33 16 31 H -0.01 -0.34 8.07 -51.92 -0.42 -0.76 16 32 H 0.04 1.12 5.33 -51.93 -0.28 0.84 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.08 1.61 6.23 -51.93 -0.32 1.29 16 35 H 0.06 1.03 6.27 -51.93 -0.33 0.71 16 36 H 0.04 0.59 6.29 -51.93 -0.33 0.26 16 37 H 0.07 1.45 7.20 -51.92 -0.37 1.08 16 38 H 0.37 4.54 9.12 45.56 0.42 4.95 16 LS Contribution 289.17 15.07 4.36 4.36 Total: -1.00 -30.25 289.17 -7.40 -37.66 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.57 Total: 2.25 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.59 Total: -12.44 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.11 Total: -38.02 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.48 Total: -10.45 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.25 -7.40 -37.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595702115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.699 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds