Wall clock time and date at job start Sun Mar 29 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.50093 * 2 1 4 4 C 1.53118 * 109.53333 * 120.09939 * 2 1 3 5 5 C 1.53112 * 109.16039 * 177.61592 * 4 2 1 6 6 C 1.53033 * 109.27818 * 302.34203 * 5 4 2 7 7 N 1.46841 * 109.52390 * 59.17928 * 6 5 4 8 8 C 1.46905 * 111.00342 * 174.15834 * 7 6 5 9 9 C 1.50695 * 109.47132 * 289.56744 * 8 7 6 10 10 H 1.07993 * 120.00056 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99519 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00552 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99856 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46925 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47210 * 119.99542 * 13 11 9 16 16 H 1.48497 * 109.47386 * 240.00184 * 13 11 9 17 17 C 1.46841 * 111.19875 * 298.25846 * 7 6 5 18 18 H 1.08999 * 109.46453 * 301.72786 * 17 7 6 19 19 C 1.53007 * 109.46783 * 181.74714 * 17 7 6 20 20 C 1.53003 * 109.46820 * 303.57993 * 19 17 7 21 21 O 1.42899 * 109.47249 * 184.78144 * 20 19 17 22 22 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47005 * 300.08200 * 1 2 3 24 24 H 1.08997 * 109.46900 * 60.08329 * 1 2 3 25 25 H 1.09008 * 109.52039 * 297.51889 * 4 2 1 26 26 H 1.08993 * 109.53045 * 57.64019 * 4 2 1 27 27 H 1.09001 * 109.50606 * 62.28430 * 5 4 2 28 28 H 1.09004 * 109.50886 * 182.39659 * 5 4 2 29 29 H 1.08997 * 109.46166 * 299.16111 * 6 5 4 30 30 H 1.09007 * 109.46034 * 179.19348 * 6 5 4 31 31 H 1.09008 * 109.46839 * 49.56481 * 8 7 6 32 32 H 1.08996 * 109.47318 * 169.55727 * 8 7 6 33 33 H 0.97000 * 120.00184 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.46744 * 63.57109 * 19 17 7 35 35 H 1.08991 * 109.47442 * 183.58282 * 19 17 7 36 36 H 1.09001 * 109.47094 * 304.78642 * 20 19 17 37 37 H 1.09009 * 109.47038 * 64.78622 * 20 19 17 38 38 H 0.96692 * 114.00352 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7237 1.2485 5 6 3.5719 -0.7710 1.2100 6 6 4.0237 -1.4716 -0.0733 7 7 3.5093 -0.7410 -1.2385 8 6 4.0372 -1.3043 -2.4883 9 6 5.5053 -0.9842 -2.6028 10 1 5.9969 -0.4186 -1.8253 11 6 6.2209 -1.4136 -3.7004 12 7 5.6223 -2.1029 -4.6471 13 14 8.0406 -1.0163 -3.8428 14 1 8.4711 -0.2351 -2.6555 15 1 8.8189 -2.2790 -3.9139 16 1 8.2784 -0.2184 -5.0724 17 6 2.0410 -0.7231 -1.2482 18 1 1.6654 -1.7463 -1.2545 19 6 1.5482 0.0085 -2.4984 20 6 2.1480 1.4156 -2.5355 21 8 1.6019 2.1372 -3.6414 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5151 0.8892 24 1 -0.3633 0.5125 -0.8907 25 1 1.7164 -0.1871 2.1397 26 1 1.6457 -1.7388 1.2695 27 1 3.9680 0.2444 1.2291 28 1 3.9409 -1.3223 2.0750 29 1 3.6388 -2.4913 -0.0851 30 1 5.1129 -1.4942 -0.1106 31 1 3.9002 -2.3857 -2.4858 32 1 3.5040 -0.8726 -3.3352 33 1 6.1257 -2.4046 -5.4195 34 1 1.8577 -0.5418 -3.3870 35 1 0.4608 0.0776 -2.4741 36 1 1.9096 1.9367 -1.6083 37 1 3.2303 1.3465 -2.6456 38 1 1.9379 3.0399 -3.7266 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595702115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:59 Heat of formation + Delta-G solvation = -87.169426 kcal Electronic energy + Delta-G solvation = -17027.855107 eV Core-core repulsion = 14482.505950 eV Total energy + Delta-G solvation = -2545.349157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66227 -37.59955 -35.83788 -34.23386 -34.07286 -30.34018 -28.80749 -27.12639 -25.48783 -24.41693 -22.13428 -21.81143 -19.98156 -18.47964 -18.28221 -16.77729 -16.76175 -15.94866 -15.85108 -15.45064 -14.89166 -14.65000 -14.41885 -14.04406 -13.77010 -13.35625 -13.22511 -12.84915 -12.77952 -12.71526 -12.55146 -12.30399 -12.19818 -12.02762 -11.66753 -11.42510 -11.37969 -10.97957 -10.85294 -10.63248 -10.52797 -8.96682 -8.19150 -6.28806 1.39127 1.39701 1.53203 2.39512 3.12535 3.23299 3.45073 3.82980 3.90667 4.04882 4.25516 4.32259 4.41753 4.48886 4.58556 4.70573 4.72063 4.78678 4.88741 4.93668 4.96903 5.05899 5.12686 5.14975 5.21546 5.26533 5.33827 5.36569 5.41713 5.51170 5.60028 5.69962 6.10077 6.42025 6.69696 6.88438 6.96205 7.40526 8.91776 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025545 B = 0.009029 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.855791 B = 3100.338099 C = 3779.664221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 H 0.078 0.922 4 C -0.109 4.109 5 C -0.108 4.108 6 C 0.061 3.939 7 N -0.530 5.530 8 C 0.203 3.797 9 C -0.515 4.515 10 H 0.062 0.938 11 C -0.002 4.002 12 N -0.936 5.936 13 Si 0.968 3.032 14 H -0.262 1.262 15 H -0.280 1.280 16 H -0.279 1.279 17 C 0.091 3.909 18 H 0.018 0.982 19 C -0.111 4.111 20 C 0.093 3.907 21 O -0.597 6.597 22 H 0.052 0.948 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.006 0.994 30 H 0.057 0.943 31 H -0.052 1.052 32 H 0.018 0.982 33 H 0.263 0.737 34 H 0.034 0.966 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.029 6.226 11.014 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.067 4.067 7 N -0.255 5.255 8 C 0.077 3.923 9 C -0.554 4.554 10 H 0.080 0.920 11 C -0.199 4.199 12 N -0.577 5.577 13 Si 0.792 3.208 14 H -0.186 1.186 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.018 4.018 18 H 0.036 0.964 19 C -0.148 4.148 20 C 0.016 3.984 21 O -0.405 6.405 22 H 0.071 0.929 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.025 0.975 30 H 0.076 0.924 31 H -0.034 1.034 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.153 6.062 10.810 14.835 hybrid contribution 1.140 -0.751 -0.828 1.596 sum -7.013 5.312 9.982 13.306 Atomic orbital electron populations 1.21848 0.93522 1.02025 1.02599 1.21225 0.96198 0.99749 0.92776 0.90361 1.21624 0.94757 1.00436 0.97824 1.21572 0.96524 1.01084 0.95409 1.21991 0.99614 0.93859 0.91212 1.62038 1.06301 1.54257 1.02895 1.19477 0.94979 0.90078 0.87767 1.21476 0.94786 1.33637 1.05477 0.91979 1.25924 1.03516 0.95088 0.95378 1.70106 1.38147 1.38889 1.10550 0.85358 0.79135 0.77961 0.78305 1.18569 1.20569 1.20510 1.21627 0.88179 0.96475 0.95477 0.96405 1.21578 1.00808 0.95387 0.97051 1.22000 0.96570 0.91644 0.88180 1.86370 1.70872 1.31461 1.51821 0.92900 0.90518 0.92476 0.89386 0.92621 0.91445 0.90208 0.97530 0.92408 1.03397 0.96418 0.92859 0.94676 0.89675 0.91691 0.94709 0.75817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.87 71.98 0.64 -2.42 16 2 C -0.08 -2.18 2.15 -10.74 -0.02 -2.20 16 3 H 0.08 2.13 6.39 -2.39 -0.02 2.11 16 4 C -0.11 -2.65 5.29 30.67 0.16 -2.48 16 5 C -0.11 -3.07 6.09 30.64 0.19 -2.88 16 6 C 0.06 2.40 5.30 86.33 0.46 2.86 16 7 N -0.53 -22.88 3.69 -875.66 -3.23 -26.11 16 8 C 0.20 11.08 4.12 85.55 0.35 11.43 16 9 C -0.52 -29.66 8.48 25.60 0.22 -29.44 16 10 H 0.06 3.50 7.44 -2.91 -0.02 3.48 16 11 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 12 N -0.94 -57.82 13.29 21.45 0.28 -57.54 16 13 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 14 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 C 0.09 3.31 1.65 44.94 0.07 3.38 16 18 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 19 C -0.11 -4.11 4.54 30.60 0.14 -3.98 16 20 C 0.09 3.28 6.52 71.98 0.47 3.75 16 21 O -0.60 -19.90 13.66 -148.98 -2.03 -21.93 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.26 6.37 -2.39 -0.02 1.24 16 25 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.06 2.49 7.04 -2.38 -0.02 2.47 16 31 H -0.05 -3.15 8.07 -2.38 -0.02 -3.17 16 32 H 0.02 1.05 5.33 -2.39 -0.01 1.04 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.03 1.57 6.23 -2.39 -0.01 1.56 16 35 H 0.08 2.75 6.27 -2.39 -0.01 2.73 16 36 H 0.07 1.92 6.29 -2.39 -0.02 1.91 16 37 H 0.03 1.47 7.20 -2.38 -0.02 1.45 16 38 H 0.39 9.06 9.12 -74.06 -0.68 8.39 16 Total: -1.00 -67.82 289.17 0.54 -67.28 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.36 Total: 12.81 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 3.14 Total: -21.61 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -2.95 Total: -83.65 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -2.03 Total: -21.93 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -67.82 0.54 -67.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595702115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.892 kcal (2) G-P(sol) polarization free energy of solvation -67.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds