Wall clock time and date at job start Sun Mar 29 2020 22:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52647 * 2 1 4 4 C 1.53126 * 109.52300 * 239.81007 * 2 1 3 5 5 C 1.53040 * 109.27755 * 297.74992 * 4 2 1 6 6 N 1.46842 * 109.52316 * 300.82231 * 5 4 2 7 7 C 1.46896 * 111.00058 * 185.84263 * 6 5 4 8 8 C 1.52996 * 109.47256 * 45.78490 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.46846 * 111.20246 * 61.74167 * 6 5 4 18 18 C 1.53039 * 109.52195 * 298.26169 * 17 6 5 19 19 H 1.09006 * 109.50011 * 299.19431 * 18 17 6 20 20 C 1.53001 * 109.50349 * 179.11776 * 18 17 6 21 21 O 1.42908 * 109.47158 * 64.99782 * 20 18 17 22 22 H 1.09002 * 109.47466 * 299.87642 * 1 2 3 23 23 H 1.09002 * 109.47063 * 59.87191 * 1 2 3 24 24 H 1.09006 * 109.47509 * 179.86983 * 1 2 3 25 25 H 1.08997 * 109.50196 * 57.69000 * 4 2 1 26 26 H 1.08999 * 109.50185 * 177.77007 * 4 2 1 27 27 H 1.08995 * 109.45771 * 180.80427 * 5 4 2 28 28 H 1.09002 * 109.45923 * 60.83686 * 5 4 2 29 29 H 1.09004 * 109.46774 * 285.78689 * 7 6 5 30 30 H 1.09000 * 109.47723 * 165.79078 * 7 6 5 31 31 H 1.09004 * 109.47066 * 60.00378 * 8 7 6 32 32 H 1.08994 * 109.47405 * 300.00209 * 8 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 34 34 H 1.09007 * 109.46175 * 58.27278 * 17 6 5 35 35 H 1.08996 * 109.46866 * 178.25207 * 17 6 5 36 36 H 1.08991 * 109.47331 * 184.99323 * 20 18 17 37 37 H 1.09001 * 109.47266 * 304.99745 * 20 18 17 38 38 H 0.96695 * 113.99968 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7257 -1.2475 5 6 1.5766 -2.1833 -1.2105 6 7 2.0924 -2.8324 0.0015 7 6 1.7823 -4.2683 0.0023 8 6 2.1079 -4.8611 -1.3701 9 6 1.7892 -6.3340 -1.3694 10 1 1.3936 -6.8006 -0.4794 11 6 1.9968 -7.0848 -2.5072 12 7 2.4782 -6.5165 -3.5912 13 14 1.5945 -8.9089 -2.5087 14 1 1.0699 -9.3013 -1.1761 15 1 0.5692 -9.1888 -3.5459 16 1 2.8242 -9.6868 -2.8057 17 6 1.5766 -2.1820 1.2128 18 6 2.0416 -0.7244 1.2481 19 1 3.1310 -0.6904 1.2685 20 6 1.4858 -0.0410 2.4992 21 8 2.0513 -0.6463 3.6637 22 1 -0.3634 0.5119 0.8911 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3634 -1.0277 -0.0023 25 1 1.6457 -0.2399 -2.1392 26 1 3.1309 -0.6911 -1.2674 27 1 1.9513 -2.7064 -2.0902 28 1 0.4871 -2.2168 -1.2048 29 1 0.7234 -4.4111 0.2179 30 1 2.3791 -4.7685 0.7650 31 1 3.1668 -4.7182 -1.5857 32 1 1.5111 -4.3610 -2.1328 33 1 2.6245 -7.0448 -4.3915 34 1 0.4870 -2.2155 1.2072 35 1 1.9514 -2.7040 2.0931 36 1 1.7426 1.0180 2.4792 37 1 0.4017 -0.1517 2.5223 38 1 1.7427 -0.2624 4.4957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598645841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:30 Heat of formation + Delta-G solvation = -66.156578 kcal Electronic energy + Delta-G solvation = -16493.902650 eV Core-core repulsion = 13949.464679 eV Total energy + Delta-G solvation = -2544.437971 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.54507 -36.69446 -34.79370 -32.70599 -31.14632 -29.53469 -27.50635 -25.45050 -24.53836 -22.53021 -21.95456 -19.58545 -18.28520 -17.31941 -16.51052 -15.60048 -15.20901 -14.52288 -14.32583 -14.14522 -13.93719 -13.49926 -13.33110 -12.69834 -12.26385 -12.14003 -11.79348 -11.50023 -11.43164 -11.00821 -10.93396 -10.82092 -10.50893 -10.49159 -10.14971 -10.02161 -9.91652 -9.74320 -9.21686 -9.00888 -8.31469 -7.54093 -5.97883 -3.99665 3.32862 3.40173 3.44665 4.15935 4.41938 4.57143 4.88976 4.94369 5.08951 5.18123 5.35262 5.38268 5.49907 5.59566 5.67018 5.71711 5.80570 5.85802 6.02838 6.06107 6.13177 6.26116 6.31121 6.39712 6.44452 6.57141 6.67057 6.70367 7.00038 7.56957 7.60046 7.70713 7.88621 7.90990 8.09823 8.47038 9.07304 9.63883 11.13633 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042341 B = 0.005708 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.136527 B = 4904.442865 C = 5305.841486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 H 0.066 0.934 4 C -0.110 4.110 5 C 0.048 3.952 6 N -0.539 5.539 7 C 0.064 3.936 8 C 0.021 3.979 9 C -0.520 4.520 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.065 3.935 18 C -0.079 4.079 19 H 0.084 0.916 20 C 0.081 3.919 21 O -0.570 6.570 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.028 0.972 29 H 0.017 0.983 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.020 0.980 33 H 0.260 0.740 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 14.815 9.134 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.148 4.148 5 C -0.079 4.079 6 N -0.264 5.264 7 C -0.063 4.063 8 C -0.017 4.017 9 C -0.559 4.559 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.063 4.063 18 C -0.098 4.098 19 H 0.102 0.898 20 C 0.002 3.998 21 O -0.375 6.375 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.685 14.449 8.495 16.975 hybrid contribution -1.422 -0.743 0.330 1.638 sum -4.107 13.706 8.824 16.811 Atomic orbital electron populations 1.22019 0.95679 1.02355 1.01128 1.21116 0.95557 0.98711 0.94981 0.91532 1.21625 1.01461 0.95491 0.96255 1.22221 0.96917 0.93795 0.95014 1.61999 1.59373 1.04051 1.00964 1.22288 0.97268 0.84855 1.01890 1.19249 0.97651 0.94850 0.89906 1.21244 1.42766 0.94093 0.97749 0.92725 1.24993 0.95279 0.98466 0.95604 1.69980 1.45300 1.35866 1.02233 0.86538 0.78007 0.85496 0.77972 1.19770 1.21073 1.20970 1.22012 0.96490 0.93615 0.94165 1.21169 1.01627 0.95134 0.91859 0.89807 1.22309 0.96474 0.95351 0.85616 1.86545 1.71408 1.63501 1.16039 0.93055 0.92722 0.91995 0.91813 0.91196 0.88943 0.95432 0.96462 0.92008 0.95693 0.96165 0.93080 0.95646 0.90782 0.93922 0.93641 0.77998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.20 37.16 0.30 -1.47 16 2 C -0.08 -1.05 2.77 -90.50 -0.25 -1.30 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -1.59 5.60 -26.65 -0.15 -1.74 16 5 C 0.05 0.87 4.60 -3.84 -0.02 0.85 16 6 N -0.54 -10.44 4.81 -234.68 -1.13 -11.56 16 7 C 0.06 1.42 5.21 -3.83 -0.02 1.40 16 8 C 0.02 0.55 4.22 -27.88 -0.12 0.43 16 9 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 10 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 13 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 C 0.07 1.08 4.35 -3.83 -0.02 1.06 16 18 C -0.08 -1.08 2.37 -90.54 -0.21 -1.29 16 19 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 20 C 0.08 0.89 5.86 37.16 0.22 1.10 16 21 O -0.57 -6.64 13.21 -35.23 -0.47 -7.11 16 22 H 0.05 0.50 6.51 -51.93 -0.34 0.16 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.82 4.92 -51.93 -0.26 0.57 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.09 1.91 5.81 -51.93 -0.30 1.61 16 28 H 0.03 0.50 6.51 -51.93 -0.34 0.16 16 29 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.56 6.21 -51.93 -0.32 0.23 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 34 H 0.03 0.42 6.52 -51.92 -0.34 0.08 16 35 H 0.07 1.29 7.83 -51.93 -0.41 0.88 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.46 6.67 -51.93 -0.35 0.12 16 38 H 0.37 2.47 9.12 45.56 0.42 2.88 16 LS Contribution 289.28 15.07 4.36 4.36 Total: -1.00 -31.53 289.28 -7.77 -39.30 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.57 Total: -0.81 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.67 Total: -14.70 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.39 Total: -37.97 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.47 Total: -7.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.53 -7.77 -39.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598645841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.860 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds