Wall clock time and date at job start Sun Mar 29 2020 22:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52647 * 2 1 4 4 C 1.53126 * 109.52300 * 239.81007 * 2 1 3 5 5 C 1.53040 * 109.27755 * 297.74992 * 4 2 1 6 6 N 1.46842 * 109.52316 * 300.82231 * 5 4 2 7 7 C 1.46896 * 111.00058 * 185.84263 * 6 5 4 8 8 C 1.52996 * 109.47256 * 45.78490 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.46846 * 111.20246 * 61.74167 * 6 5 4 18 18 C 1.53039 * 109.52195 * 298.26169 * 17 6 5 19 19 H 1.09006 * 109.50011 * 299.19431 * 18 17 6 20 20 C 1.53001 * 109.50349 * 179.11776 * 18 17 6 21 21 O 1.42908 * 109.47158 * 64.99782 * 20 18 17 22 22 H 1.09002 * 109.47466 * 299.87642 * 1 2 3 23 23 H 1.09002 * 109.47063 * 59.87191 * 1 2 3 24 24 H 1.09006 * 109.47509 * 179.86983 * 1 2 3 25 25 H 1.08997 * 109.50196 * 57.69000 * 4 2 1 26 26 H 1.08999 * 109.50185 * 177.77007 * 4 2 1 27 27 H 1.08995 * 109.45771 * 180.80427 * 5 4 2 28 28 H 1.09002 * 109.45923 * 60.83686 * 5 4 2 29 29 H 1.09004 * 109.46774 * 285.78689 * 7 6 5 30 30 H 1.09000 * 109.47723 * 165.79078 * 7 6 5 31 31 H 1.09004 * 109.47066 * 60.00378 * 8 7 6 32 32 H 1.08994 * 109.47405 * 300.00209 * 8 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 34 34 H 1.09007 * 109.46175 * 58.27278 * 17 6 5 35 35 H 1.08996 * 109.46866 * 178.25207 * 17 6 5 36 36 H 1.08991 * 109.47331 * 184.99323 * 20 18 17 37 37 H 1.09001 * 109.47266 * 304.99745 * 20 18 17 38 38 H 0.96695 * 113.99968 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7257 -1.2475 5 6 1.5766 -2.1833 -1.2105 6 7 2.0924 -2.8324 0.0015 7 6 1.7823 -4.2683 0.0023 8 6 2.1079 -4.8611 -1.3701 9 6 1.7892 -6.3340 -1.3694 10 1 1.3936 -6.8006 -0.4794 11 6 1.9968 -7.0848 -2.5072 12 7 2.4782 -6.5165 -3.5912 13 14 1.5945 -8.9089 -2.5087 14 1 1.0699 -9.3013 -1.1761 15 1 0.5692 -9.1888 -3.5459 16 1 2.8242 -9.6868 -2.8057 17 6 1.5766 -2.1820 1.2128 18 6 2.0416 -0.7244 1.2481 19 1 3.1310 -0.6904 1.2685 20 6 1.4858 -0.0410 2.4992 21 8 2.0513 -0.6463 3.6637 22 1 -0.3634 0.5119 0.8911 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3634 -1.0277 -0.0023 25 1 1.6457 -0.2399 -2.1392 26 1 3.1309 -0.6911 -1.2674 27 1 1.9513 -2.7064 -2.0902 28 1 0.4871 -2.2168 -1.2048 29 1 0.7234 -4.4111 0.2179 30 1 2.3791 -4.7685 0.7650 31 1 3.1668 -4.7182 -1.5857 32 1 1.5111 -4.3610 -2.1328 33 1 2.6245 -7.0448 -4.3915 34 1 0.4870 -2.2155 1.2072 35 1 1.9514 -2.7040 2.0931 36 1 1.7426 1.0180 2.4792 37 1 0.4017 -0.1517 2.5223 38 1 1.7427 -0.2624 4.4957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598645841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:30 Heat of formation + Delta-G solvation = -89.659223 kcal Electronic energy + Delta-G solvation = -16494.921801 eV Core-core repulsion = 13949.464679 eV Total energy + Delta-G solvation = -2545.457122 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79104 -37.74553 -36.26940 -34.72980 -32.34744 -31.41900 -28.68497 -26.93876 -26.02649 -24.21943 -23.21189 -21.29412 -19.40015 -18.66352 -18.18718 -16.89947 -16.64092 -16.30643 -15.83733 -15.48223 -15.06795 -14.86285 -14.58487 -14.20517 -14.00517 -13.48582 -13.28210 -12.90489 -12.81441 -12.67566 -12.45644 -12.37202 -12.00227 -11.97792 -11.63102 -11.44303 -11.29848 -11.13429 -10.88381 -10.72315 -10.55222 -9.11533 -8.22204 -6.33679 1.38744 1.39514 1.53004 2.39039 3.05698 3.10985 3.36620 3.81350 3.86167 4.10083 4.14956 4.33449 4.43734 4.44701 4.46885 4.57226 4.60806 4.66348 4.75900 4.80141 4.86661 4.95255 4.99827 5.10077 5.18349 5.20415 5.28486 5.37540 5.43440 5.53270 5.64548 5.76682 6.09242 6.32282 6.36856 6.82363 6.99772 7.35349 8.90118 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042341 B = 0.005708 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.136527 B = 4904.442865 C = 5305.841486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 H 0.096 0.904 4 C -0.106 4.106 5 C 0.051 3.949 6 N -0.550 5.550 7 C 0.078 3.922 8 C 0.032 3.968 9 C -0.547 4.547 10 H 0.057 0.943 11 C 0.003 3.997 12 N -0.931 5.931 13 Si 0.968 3.032 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.068 3.932 18 C -0.077 4.077 19 H 0.067 0.933 20 C 0.085 3.915 21 O -0.595 6.595 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.037 0.963 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.027 0.973 29 H 0.016 0.984 30 H 0.057 0.943 31 H -0.008 1.008 32 H 0.003 0.997 33 H 0.265 0.735 34 H 0.030 0.970 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.510 15.894 10.202 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.097 4.097 3 H 0.114 0.886 4 C -0.144 4.144 5 C -0.077 4.077 6 N -0.274 5.274 7 C -0.049 4.049 8 C -0.005 4.005 9 C -0.585 4.585 10 H 0.076 0.924 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.792 3.208 14 H -0.187 1.187 15 H -0.201 1.201 16 H -0.202 1.202 17 C -0.060 4.060 18 C -0.096 4.096 19 H 0.085 0.915 20 C 0.008 3.992 21 O -0.403 6.403 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.010 0.990 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -3.660 15.553 9.591 18.636 hybrid contribution -1.096 -1.053 -0.003 1.519 sum -4.756 14.501 9.588 18.023 Atomic orbital electron populations 1.21992 0.94673 1.01299 1.02902 1.21107 0.96282 0.99543 0.92775 0.88561 1.21613 1.01100 0.93023 0.98660 1.22163 0.96706 0.95873 0.92963 1.61977 1.60101 1.02554 1.02809 1.21956 0.96905 0.87089 0.98965 1.19044 0.95063 0.94484 0.91888 1.21645 1.43301 0.95337 0.98217 0.92443 1.25960 0.94747 1.03833 0.94990 1.70110 1.45945 1.38030 1.02979 0.85358 0.78069 0.78865 0.78492 1.18741 1.20119 1.20196 1.22053 0.96606 0.95405 0.91924 1.21166 1.00755 0.93320 0.94396 0.91467 1.22260 0.96788 0.96102 0.84091 1.86489 1.72005 1.64449 1.17403 0.90755 0.91567 0.94381 0.89933 0.91952 0.92642 0.95494 0.96556 0.92481 0.99001 0.97909 0.92665 0.95233 0.92061 0.91269 0.92494 0.75477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.20 71.98 0.59 -2.43 16 2 C -0.08 -1.73 2.77 -10.71 -0.03 -1.76 16 3 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 4 C -0.11 -2.96 5.60 30.65 0.17 -2.79 16 5 C 0.05 1.89 4.60 86.33 0.40 2.28 16 6 N -0.55 -21.90 4.81 -896.38 -4.31 -26.21 16 7 C 0.08 3.64 5.21 86.30 0.45 4.09 16 8 C 0.03 1.81 4.22 29.85 0.13 1.94 16 9 C -0.55 -32.43 9.11 25.60 0.23 -32.20 16 10 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 11 C 0.00 0.16 5.46 84.66 0.46 0.62 16 12 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 13 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 14 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 C 0.07 2.21 4.35 86.33 0.38 2.59 16 18 C -0.08 -1.97 2.37 -10.74 -0.03 -2.00 16 19 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 20 C 0.09 1.60 5.86 71.98 0.42 2.03 16 21 O -0.60 -12.49 13.21 -148.98 -1.97 -14.46 16 22 H 0.07 1.15 6.51 -2.39 -0.02 1.14 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.04 0.94 4.92 -2.38 -0.01 0.93 16 25 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 2.44 5.81 -2.39 -0.01 2.43 16 28 H 0.03 0.99 6.51 -2.39 -0.02 0.98 16 29 H 0.02 0.75 8.08 -2.38 -0.02 0.73 16 30 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 31 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 32 H 0.00 0.16 6.21 -2.39 -0.01 0.14 16 33 H 0.26 15.31 8.31 -92.70 -0.77 14.53 16 34 H 0.03 0.95 6.52 -2.38 -0.02 0.93 16 35 H 0.06 2.14 7.83 -2.39 -0.02 2.12 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 0.95 6.67 -2.39 -0.02 0.93 16 38 H 0.40 4.15 9.12 -74.06 -0.68 3.48 16 Total: -1.00 -69.58 289.28 -0.44 -70.02 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.36 Total: 8.48 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 3.17 Total: -27.63 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -4.02 Total: -83.72 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.97 Total: -14.46 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.58 -0.44 -70.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598645841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.641 kcal (2) G-P(sol) polarization free energy of solvation -69.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds