Wall clock time and date at job start Sun Mar 29 2020 22:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.52727 * 2 1 4 4 C 1.53127 * 109.57400 * 239.84418 * 2 1 3 5 5 C 1.53038 * 109.27941 * 182.40961 * 4 2 1 6 6 N 1.46830 * 109.51757 * 59.17550 * 5 4 2 7 7 C 1.46901 * 110.98168 * 174.15669 * 6 5 4 8 8 C 1.53000 * 109.47158 * 294.21498 * 7 6 5 9 9 C 1.50699 * 109.47018 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00024 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00197 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99682 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00315 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46910 * 90.00004 * 13 11 9 15 15 H 1.48497 * 109.47200 * 209.99700 * 13 11 9 16 16 H 1.48499 * 109.47085 * 329.99974 * 13 11 9 17 17 C 1.46847 * 111.21086 * 298.25173 * 6 5 4 18 18 C 1.53044 * 109.51335 * 61.74856 * 17 6 5 19 19 H 1.09000 * 109.50050 * 60.80717 * 18 17 6 20 20 C 1.53000 * 109.49930 * 180.88542 * 18 17 6 21 21 O 1.42907 * 109.47143 * 294.99854 * 20 18 17 22 22 H 1.09003 * 109.46610 * 299.86829 * 1 2 3 23 23 H 1.08996 * 109.47038 * 59.86896 * 1 2 3 24 24 H 1.09002 * 109.47219 * 179.87185 * 1 2 3 25 25 H 1.08997 * 109.50037 * 302.34913 * 4 2 1 26 26 H 1.09000 * 109.49970 * 62.46574 * 4 2 1 27 27 H 1.08995 * 109.46433 * 179.19502 * 5 4 2 28 28 H 1.09004 * 109.46142 * 299.17444 * 5 4 2 29 29 H 1.09001 * 109.46985 * 54.21857 * 7 6 5 30 30 H 1.09002 * 109.46593 * 174.21847 * 7 6 5 31 31 H 1.09002 * 109.46999 * 300.00307 * 8 7 6 32 32 H 1.08998 * 109.46977 * 59.99901 * 8 7 6 33 33 H 0.96998 * 119.99705 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.46448 * 301.73578 * 17 6 5 35 35 H 1.08994 * 109.45958 * 181.75943 * 17 6 5 36 36 H 1.08994 * 109.47321 * 54.99808 * 20 18 17 37 37 H 1.08994 * 109.47089 * 175.00165 * 20 18 17 38 38 H 0.96697 * 114.00137 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0430 -0.7248 -1.2475 5 6 3.5721 -0.7736 -1.2106 6 7 4.0114 -1.4766 0.0013 7 6 5.4684 -1.6641 0.0018 8 6 5.8614 -2.6081 -1.1364 9 6 7.3560 -2.8010 -1.1355 10 1 7.9647 -2.3000 -0.3973 11 6 7.9465 -3.6161 -2.0778 12 7 7.2053 -4.2258 -2.9770 13 14 9.7992 -3.8546 -2.0772 14 1 10.1487 -5.0139 -1.2174 15 1 10.2661 -4.1083 -3.4638 16 1 10.4556 -2.6314 -1.5498 17 6 3.5709 -0.7731 1.2128 18 6 2.0417 -0.7244 1.2481 19 1 1.6457 -1.7397 1.2685 20 6 1.5835 0.0278 2.4992 21 8 1.9650 -0.7075 3.6636 22 1 -0.3633 0.5118 0.8912 23 1 -0.3633 0.5159 -0.8888 24 1 -0.3634 -1.0277 -0.0023 25 1 1.6469 -1.7400 -1.2672 26 1 1.7173 -0.1891 -2.1392 27 1 3.9400 -1.3015 -2.0903 28 1 3.9678 0.2421 -1.2046 29 1 5.9587 -0.7009 -0.1393 30 1 5.7790 -2.0940 0.9540 31 1 5.3710 -3.5713 -0.9953 32 1 5.5507 -2.1783 -2.0886 33 1 7.6207 -4.7996 -3.6397 34 1 3.9667 0.2425 1.2072 35 1 3.9380 -1.3010 2.0929 36 1 2.0501 1.0126 2.5223 37 1 0.4995 0.1397 2.4792 38 1 1.7057 -0.2887 4.4958 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598645842.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:32 Heat of formation + Delta-G solvation = -72.140702 kcal Electronic energy + Delta-G solvation = -16300.891687 eV Core-core repulsion = 13756.194224 eV Total energy + Delta-G solvation = -2544.697462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.29984 -36.66745 -34.86452 -32.81069 -31.15348 -29.90272 -27.53194 -25.52600 -24.02283 -21.90205 -21.82603 -19.71574 -19.50722 -17.36544 -16.41894 -15.27614 -15.07477 -14.49014 -14.42390 -14.16663 -13.92515 -13.59301 -12.93101 -12.82158 -12.24559 -12.05479 -12.01211 -11.83200 -11.36532 -11.04010 -10.88927 -10.83004 -10.62084 -10.48054 -10.18283 -10.09064 -9.87065 -9.72496 -9.21239 -9.05708 -8.28160 -7.60262 -5.95218 -3.97234 3.35251 3.41053 3.44415 4.14746 4.41932 4.58336 4.83048 4.91714 5.00150 5.16470 5.33132 5.40571 5.47537 5.60532 5.66312 5.69167 5.76999 5.83574 5.86107 6.06928 6.10538 6.20845 6.24746 6.38631 6.39735 6.51948 6.61628 6.67101 7.04972 7.57128 7.60990 7.69165 7.87968 7.97596 8.15005 8.49321 9.10120 9.66042 11.16261 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042382 B = 0.005463 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.497627 B = 5124.241058 C = 5605.126843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.065 0.935 4 C -0.109 4.109 5 C 0.053 3.947 6 N -0.539 5.539 7 C 0.064 3.936 8 C 0.028 3.972 9 C -0.521 4.521 10 H 0.053 0.947 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.066 3.934 18 C -0.079 4.079 19 H 0.085 0.915 20 C 0.080 3.920 21 O -0.569 6.569 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.023 0.977 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.024 0.976 32 H 0.017 0.983 33 H 0.260 0.740 34 H 0.020 0.980 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.313 10.123 7.969 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.075 4.075 6 N -0.263 5.263 7 C -0.062 4.062 8 C -0.009 4.009 9 C -0.560 4.560 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.063 4.063 18 C -0.098 4.098 19 H 0.104 0.896 20 C 0.001 3.999 21 O -0.374 6.374 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -13.265 9.135 7.352 17.705 hybrid contribution 1.205 1.074 0.351 1.652 sum -12.060 10.209 7.703 17.579 Atomic orbital electron populations 1.21900 0.95403 1.02005 1.01229 1.21152 0.95220 0.99132 0.94994 0.91704 1.21637 0.95816 1.00995 0.96239 1.22116 0.94374 0.96213 0.94819 1.61980 1.15118 1.48367 1.00829 1.22306 0.83533 0.98699 1.01709 1.19102 0.95447 0.94417 0.91979 1.21213 0.92568 1.27916 1.14278 0.92839 1.24990 0.98023 0.95765 0.95532 1.69979 1.35114 1.30776 1.17452 0.86600 0.85788 0.78483 0.77152 1.20640 1.21253 1.19962 1.22005 0.93806 0.96185 0.94256 1.21203 0.96324 1.00439 0.91805 0.89630 1.22317 0.97847 0.94033 0.85657 1.86551 1.83214 1.51630 1.16015 0.92925 0.92722 0.92407 0.90995 0.91834 0.89497 0.95904 0.96444 0.92145 0.95713 0.96498 0.93048 0.96143 0.90511 0.94101 0.93448 0.77992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.92 37.16 0.33 -1.12 16 2 C -0.09 -1.05 2.29 -90.50 -0.21 -1.26 16 3 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.11 -1.53 5.38 -26.65 -0.14 -1.68 16 5 C 0.05 0.93 5.29 -3.84 -0.02 0.91 16 6 N -0.54 -10.47 4.66 -234.68 -1.09 -11.56 16 7 C 0.06 1.44 4.90 -3.82 -0.02 1.42 16 8 C 0.03 0.75 4.90 -27.88 -0.14 0.61 16 9 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.37 13.29 55.43 0.74 -26.64 16 13 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.07 1.09 4.63 -3.83 -0.02 1.07 16 18 C -0.08 -1.07 2.09 -90.54 -0.19 -1.26 16 19 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 20 C 0.08 0.87 6.25 37.16 0.23 1.10 16 21 O -0.57 -6.67 13.21 -35.23 -0.47 -7.13 16 22 H 0.05 0.45 6.40 -51.93 -0.33 0.12 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.72 6.21 -51.93 -0.32 1.40 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.06 1.35 7.99 -51.93 -0.41 0.94 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 1.35 7.72 -51.93 -0.40 0.95 16 36 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.44 6.27 -51.93 -0.33 0.11 16 38 H 0.37 2.48 9.12 45.56 0.42 2.89 16 LS Contribution 296.96 15.07 4.48 4.48 Total: -1.00 -31.91 296.96 -7.85 -39.76 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.90 Total: -1.87 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.58 Total: -14.06 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.36 Total: -38.20 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.47 Total: -7.13 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.91 -7.85 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598645842.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.381 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds