Wall clock time and date at job start Sun Mar 29 2020 22:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.52727 * 2 1 4 4 C 1.53127 * 109.57400 * 239.84418 * 2 1 3 5 5 C 1.53038 * 109.27941 * 182.40961 * 4 2 1 6 6 N 1.46830 * 109.51757 * 59.17550 * 5 4 2 7 7 C 1.46901 * 110.98168 * 174.15669 * 6 5 4 8 8 C 1.53000 * 109.47158 * 294.21498 * 7 6 5 9 9 C 1.50699 * 109.47018 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00024 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00197 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99682 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00315 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46910 * 90.00004 * 13 11 9 15 15 H 1.48497 * 109.47200 * 209.99700 * 13 11 9 16 16 H 1.48499 * 109.47085 * 329.99974 * 13 11 9 17 17 C 1.46847 * 111.21086 * 298.25173 * 6 5 4 18 18 C 1.53044 * 109.51335 * 61.74856 * 17 6 5 19 19 H 1.09000 * 109.50050 * 60.80717 * 18 17 6 20 20 C 1.53000 * 109.49930 * 180.88542 * 18 17 6 21 21 O 1.42907 * 109.47143 * 294.99854 * 20 18 17 22 22 H 1.09003 * 109.46610 * 299.86829 * 1 2 3 23 23 H 1.08996 * 109.47038 * 59.86896 * 1 2 3 24 24 H 1.09002 * 109.47219 * 179.87185 * 1 2 3 25 25 H 1.08997 * 109.50037 * 302.34913 * 4 2 1 26 26 H 1.09000 * 109.49970 * 62.46574 * 4 2 1 27 27 H 1.08995 * 109.46433 * 179.19502 * 5 4 2 28 28 H 1.09004 * 109.46142 * 299.17444 * 5 4 2 29 29 H 1.09001 * 109.46985 * 54.21857 * 7 6 5 30 30 H 1.09002 * 109.46593 * 174.21847 * 7 6 5 31 31 H 1.09002 * 109.46999 * 300.00307 * 8 7 6 32 32 H 1.08998 * 109.46977 * 59.99901 * 8 7 6 33 33 H 0.96998 * 119.99705 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.46448 * 301.73578 * 17 6 5 35 35 H 1.08994 * 109.45958 * 181.75943 * 17 6 5 36 36 H 1.08994 * 109.47321 * 54.99808 * 20 18 17 37 37 H 1.08994 * 109.47089 * 175.00165 * 20 18 17 38 38 H 0.96697 * 114.00137 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0430 -0.7248 -1.2475 5 6 3.5721 -0.7736 -1.2106 6 7 4.0114 -1.4766 0.0013 7 6 5.4684 -1.6641 0.0018 8 6 5.8614 -2.6081 -1.1364 9 6 7.3560 -2.8010 -1.1355 10 1 7.9647 -2.3000 -0.3973 11 6 7.9465 -3.6161 -2.0778 12 7 7.2053 -4.2258 -2.9770 13 14 9.7992 -3.8546 -2.0772 14 1 10.1487 -5.0139 -1.2174 15 1 10.2661 -4.1083 -3.4638 16 1 10.4556 -2.6314 -1.5498 17 6 3.5709 -0.7731 1.2128 18 6 2.0417 -0.7244 1.2481 19 1 1.6457 -1.7397 1.2685 20 6 1.5835 0.0278 2.4992 21 8 1.9650 -0.7075 3.6636 22 1 -0.3633 0.5118 0.8912 23 1 -0.3633 0.5159 -0.8888 24 1 -0.3634 -1.0277 -0.0023 25 1 1.6469 -1.7400 -1.2672 26 1 1.7173 -0.1891 -2.1392 27 1 3.9400 -1.3015 -2.0903 28 1 3.9678 0.2421 -1.2046 29 1 5.9587 -0.7009 -0.1393 30 1 5.7790 -2.0940 0.9540 31 1 5.3710 -3.5713 -0.9953 32 1 5.5507 -2.1783 -2.0886 33 1 7.6207 -4.7996 -3.6397 34 1 3.9667 0.2425 1.2072 35 1 3.9380 -1.3010 2.0929 36 1 2.0501 1.0126 2.5223 37 1 0.4995 0.1397 2.4792 38 1 1.7057 -0.2887 4.4958 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598645842.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:32 Heat of formation + Delta-G solvation = -95.658933 kcal Electronic energy + Delta-G solvation = -16301.911514 eV Core-core repulsion = 13756.194224 eV Total energy + Delta-G solvation = -2545.717289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53230 -37.73891 -36.25800 -34.84126 -32.33586 -31.73295 -28.86170 -26.89512 -25.71011 -23.44607 -23.01911 -21.41303 -20.63636 -18.61917 -18.20461 -16.64737 -16.52318 -16.32609 -15.82600 -15.28530 -15.09344 -14.79541 -14.53930 -14.24109 -13.85889 -13.43861 -13.32045 -13.13580 -12.83084 -12.61594 -12.53390 -12.37777 -12.01524 -11.89867 -11.68219 -11.46918 -11.33220 -11.11904 -11.02735 -10.66834 -10.53131 -9.17404 -8.21049 -6.32897 1.39175 1.41444 1.52357 2.39627 3.03847 3.11979 3.36025 3.80205 3.83692 4.03296 4.12154 4.29208 4.42944 4.47195 4.50507 4.56817 4.61443 4.67081 4.74998 4.82812 4.86607 4.96124 5.02858 5.05398 5.17994 5.19995 5.27698 5.36901 5.45172 5.55542 5.65452 5.77748 6.11153 6.32081 6.36190 6.83656 6.99338 7.36146 8.91325 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042382 B = 0.005463 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.497627 B = 5124.241058 C = 5605.126843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.076 0.924 4 C -0.104 4.104 5 C 0.052 3.948 6 N -0.553 5.553 7 C 0.080 3.920 8 C 0.038 3.962 9 C -0.547 4.547 10 H 0.059 0.941 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.969 3.031 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.263 1.263 17 C 0.068 3.932 18 C -0.077 4.077 19 H 0.065 0.935 20 C 0.084 3.916 21 O -0.595 6.595 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.029 0.971 29 H 0.018 0.982 30 H 0.057 0.943 31 H -0.010 1.010 32 H -0.004 1.004 33 H 0.264 0.736 34 H 0.028 0.972 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.806 11.667 8.886 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.094 0.906 4 C -0.142 4.142 5 C -0.075 4.075 6 N -0.278 5.278 7 C -0.048 4.048 8 C 0.001 3.999 9 C -0.586 4.586 10 H 0.077 0.923 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.793 3.207 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.187 1.187 17 C -0.060 4.060 18 C -0.096 4.096 19 H 0.083 0.917 20 C 0.007 3.993 21 O -0.403 6.403 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.008 0.992 32 H 0.015 0.985 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -13.781 10.699 8.297 19.320 hybrid contribution 1.331 0.573 0.067 1.450 sum -12.451 11.272 8.364 18.763 Atomic orbital electron populations 1.21853 0.93031 1.02198 1.02871 1.21116 0.97085 0.98895 0.92791 0.90583 1.21623 0.92748 1.01131 0.98672 1.22123 0.97113 0.95564 0.92748 1.61914 1.12895 1.50155 1.02835 1.21945 0.85959 0.97404 0.99448 1.18911 0.94662 0.93545 0.92817 1.21622 0.93646 1.28497 1.14785 0.92316 1.25982 1.03708 0.95098 0.94819 1.70118 1.37595 1.31308 1.18144 0.85397 0.78869 0.78909 0.77550 1.19701 1.20481 1.18737 1.22045 0.96229 0.95735 0.91993 1.21194 0.93711 1.00244 0.94443 0.91679 1.22275 0.99317 0.93643 0.84110 1.86496 1.83713 1.52713 1.17400 0.90960 0.91450 0.92961 0.92242 0.89661 0.92765 0.95312 0.96377 0.92430 0.99207 0.98547 0.92687 0.95399 0.91957 0.92794 0.90923 0.75468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.92 71.98 0.64 -1.68 16 2 C -0.08 -1.76 2.29 -10.71 -0.02 -1.79 16 3 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 4 C -0.10 -2.85 5.38 30.65 0.16 -2.68 16 5 C 0.05 1.89 5.29 86.33 0.46 2.35 16 6 N -0.55 -22.09 4.66 -896.39 -4.17 -26.27 16 7 C 0.08 3.71 4.90 86.30 0.42 4.13 16 8 C 0.04 2.15 4.90 29.85 0.15 2.30 16 9 C -0.55 -32.60 9.11 25.60 0.23 -32.36 16 10 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 11 C 0.00 0.11 5.46 84.65 0.46 0.57 16 12 N -0.93 -58.42 13.29 21.45 0.28 -58.14 16 13 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 17 C 0.07 2.22 4.63 86.33 0.40 2.62 16 18 C -0.08 -1.98 2.09 -10.74 -0.02 -2.01 16 19 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 20 C 0.08 1.61 6.25 71.98 0.45 2.06 16 21 O -0.59 -12.72 13.21 -148.98 -1.97 -14.69 16 22 H 0.07 0.92 6.40 -2.39 -0.02 0.90 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.05 2.28 6.21 -2.39 -0.01 2.26 16 28 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 30 H 0.06 2.66 7.99 -2.39 -0.02 2.64 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.00 -0.22 6.43 -2.39 -0.02 -0.24 16 33 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 2.20 7.72 -2.39 -0.02 2.18 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 1.04 6.27 -2.39 -0.01 1.02 16 38 H 0.40 4.27 9.12 -74.06 -0.68 3.59 16 Total: -1.00 -70.41 296.96 -0.16 -70.57 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.34 Total: 7.59 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 3.33 Total: -26.50 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -3.89 Total: -84.40 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -1.97 Total: -14.69 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -70.41 -0.16 -70.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598645842.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.088 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds