Wall clock time and date at job start Sun Mar 29 2020 22:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.57601 * 2 1 4 4 C 1.53123 * 109.52198 * 120.15836 * 2 1 3 5 5 C 1.53039 * 109.31189 * 62.27073 * 4 2 1 6 6 N 1.46842 * 109.52266 * 59.15550 * 5 4 2 7 7 C 1.46910 * 110.99703 * 174.16402 * 6 5 4 8 8 C 1.53001 * 109.47153 * 66.04611 * 7 6 5 9 9 C 1.50696 * 109.47089 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00038 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00062 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00200 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00085 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46993 * 89.99755 * 13 11 9 15 15 H 1.48497 * 109.47435 * 209.99811 * 13 11 9 16 16 H 1.48503 * 109.47036 * 330.00146 * 13 11 9 17 17 C 1.46849 * 111.20050 * 298.25785 * 6 5 4 18 18 C 1.53036 * 109.52274 * 61.74759 * 17 6 5 19 19 H 1.09000 * 109.50390 * 60.75234 * 18 17 6 20 20 C 1.52994 * 109.50432 * 180.88126 * 18 17 6 21 21 O 1.42901 * 109.46610 * 294.99604 * 20 18 17 22 22 H 1.09006 * 109.46735 * 299.84309 * 1 2 3 23 23 H 1.09000 * 109.46901 * 59.84175 * 1 2 3 24 24 H 1.08994 * 109.47213 * 179.84112 * 1 2 3 25 25 H 1.09002 * 109.50371 * 302.30623 * 4 2 1 26 26 H 1.09003 * 109.50070 * 182.22783 * 4 2 1 27 27 H 1.08995 * 109.46501 * 179.17754 * 5 4 2 28 28 H 1.09009 * 109.45500 * 299.14277 * 5 4 2 29 29 H 1.08996 * 109.46709 * 186.04933 * 7 6 5 30 30 H 1.09002 * 109.46552 * 306.04948 * 7 6 5 31 31 H 1.08995 * 109.47022 * 300.00315 * 8 7 6 32 32 H 1.09001 * 109.46710 * 59.99819 * 8 7 6 33 33 H 0.96999 * 120.00375 * 180.02562 * 12 11 9 34 34 H 1.09001 * 109.46071 * 181.75754 * 17 6 5 35 35 H 1.09002 * 109.46350 * 301.73871 * 17 6 5 36 36 H 1.08997 * 109.47715 * 54.99438 * 20 18 17 37 37 H 1.08999 * 109.47133 * 175.00217 * 20 18 17 38 38 H 0.96707 * 113.99721 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 1.2479 5 6 1.5775 -2.1829 1.2122 6 7 2.0932 -2.8327 0.0006 7 6 1.7838 -4.2688 0.0011 8 6 0.2695 -4.4643 -0.0975 9 6 -0.0478 -5.9375 -0.0977 10 1 0.7507 -6.6619 -0.0334 11 6 -1.3574 -6.3606 -0.1798 12 7 -1.6343 -7.6462 -0.1804 13 14 -2.7384 -5.1077 -0.2917 14 1 -3.0100 -4.7964 -1.7180 15 1 -3.9639 -5.6644 0.3355 16 1 -2.3391 -3.8661 0.4186 17 6 1.5766 -2.1835 -1.2111 18 6 2.0409 -0.7257 -1.2479 19 1 3.1302 -0.6911 -1.2677 20 6 1.4843 -0.0437 -2.4992 21 8 2.0498 -0.6497 -3.6632 22 1 -0.3633 0.5114 0.8915 23 1 -0.3633 0.5163 -0.8886 24 1 -0.3633 -1.0276 -0.0028 25 1 1.6458 -0.2387 2.1394 26 1 3.1310 -0.6904 1.2678 27 1 1.9527 -2.7052 2.0922 28 1 0.4879 -2.2169 1.2069 29 1 2.2680 -4.7450 -0.8515 30 1 2.1489 -4.7187 0.9243 31 1 -0.2145 -3.9880 0.7550 32 1 -0.0955 -4.0142 -1.0207 33 1 -2.5557 -7.9439 -0.2386 34 1 1.9513 -2.7062 -2.0911 35 1 0.4871 -2.2175 -1.2049 36 1 0.4002 -0.1550 -2.5219 37 1 1.7406 1.0155 -2.4801 38 1 1.7412 -0.2661 -4.4956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598645843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:34 Heat of formation + Delta-G solvation = -65.343960 kcal Electronic energy + Delta-G solvation = -16875.274429 eV Core-core repulsion = 14330.871695 eV Total energy + Delta-G solvation = -2544.402733 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.65961 -36.69611 -34.91453 -32.63647 -31.20189 -29.84492 -27.46339 -25.66806 -24.66431 -22.63627 -21.60376 -20.08624 -18.05142 -17.30045 -16.82779 -15.65873 -15.31396 -14.59199 -14.27946 -14.16650 -13.93844 -13.40254 -13.22505 -12.83788 -12.56156 -12.36777 -11.69131 -11.59752 -11.50750 -11.37139 -11.02394 -10.88655 -10.67263 -10.23180 -10.10118 -10.06102 -9.86302 -9.78946 -9.67881 -9.20391 -8.54253 -7.54174 -6.05424 -4.03061 3.27424 3.34743 3.37476 4.18854 4.43115 4.45422 4.84288 4.93262 5.09030 5.16632 5.27924 5.36228 5.49949 5.56857 5.61513 5.70797 5.77371 5.80143 6.02179 6.05702 6.08892 6.14841 6.22760 6.31786 6.37499 6.46667 6.54930 6.61889 6.77653 7.22626 7.27558 7.55986 7.62643 7.74476 7.89241 8.53370 9.00000 9.57296 11.08072 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027248 B = 0.007920 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.355436 B = 3534.371271 C = 3666.276016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.084 4.084 3 H 0.067 0.933 4 C -0.109 4.109 5 C 0.049 3.951 6 N -0.542 5.542 7 C 0.067 3.933 8 C -0.044 4.044 9 C -0.517 4.517 10 H 0.073 0.927 11 C 0.067 3.933 12 N -0.903 5.903 13 Si 0.879 3.121 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.063 3.937 18 C -0.080 4.080 19 H 0.082 0.918 20 C 0.080 3.920 21 O -0.570 6.570 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.015 0.985 32 H 0.012 0.988 33 H 0.263 0.737 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.042 0.958 38 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.958 18.025 -1.489 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.147 4.147 5 C -0.079 4.079 6 N -0.265 5.265 7 C -0.060 4.060 8 C -0.083 4.083 9 C -0.555 4.555 10 H 0.091 0.909 11 C -0.134 4.134 12 N -0.542 5.542 13 Si 0.706 3.294 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.193 1.193 17 C -0.065 4.065 18 C -0.098 4.098 19 H 0.100 0.900 20 C 0.002 3.998 21 O -0.374 6.374 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.635 17.574 -1.026 18.483 hybrid contribution -2.137 0.761 -0.493 2.322 sum 3.497 18.334 -1.519 18.727 Atomic orbital electron populations 1.22049 0.95516 1.02722 1.01249 1.21104 0.95698 0.98666 0.94844 0.91469 1.21600 1.01171 0.95327 0.96578 1.22089 0.98160 0.93946 0.93706 1.62279 1.58806 1.04103 1.01329 1.22138 0.96798 0.85266 1.01809 1.20143 0.93816 0.98248 0.96099 1.21064 0.93650 0.90438 1.50361 0.90883 1.25026 0.98745 0.94995 0.94640 1.69914 1.19386 1.13786 1.51101 0.86794 0.81869 0.82187 0.78519 1.20332 1.21337 1.19300 1.22026 0.97773 0.93035 0.93684 1.21186 1.01372 0.95383 0.91904 0.89977 1.22292 0.96692 0.95179 0.85639 1.86535 1.71311 1.63549 1.16038 0.92750 0.92861 0.91733 0.91856 0.91351 0.91137 0.94205 0.91372 0.91473 0.96722 0.96976 0.92758 0.90433 0.94335 0.93516 0.93984 0.77911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.19 37.16 0.30 -1.66 16 2 C -0.08 -1.03 2.78 -90.49 -0.25 -1.28 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.40 5.60 -26.65 -0.15 -1.55 16 5 C 0.05 0.80 4.80 -3.84 -0.02 0.78 16 6 N -0.54 -9.79 4.86 -234.66 -1.14 -10.93 16 7 C 0.07 1.41 5.30 -3.82 -0.02 1.39 16 8 C -0.04 -1.08 3.34 -27.88 -0.09 -1.18 16 9 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 10 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -28.24 13.96 55.43 0.77 -27.46 16 13 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 17 C 0.06 1.08 3.76 -3.83 -0.01 1.07 16 18 C -0.08 -1.10 2.37 -90.54 -0.21 -1.31 16 19 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 20 C 0.08 0.95 5.86 37.15 0.22 1.16 16 21 O -0.57 -7.15 13.21 -35.23 -0.47 -7.61 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.58 6.52 -51.93 -0.34 0.25 16 24 H 0.06 0.98 4.92 -51.93 -0.26 0.72 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.12 8.06 -51.93 -0.42 0.71 16 28 H 0.04 0.71 5.13 -51.92 -0.27 0.44 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.07 1.40 8.06 -51.93 -0.42 0.99 16 31 H 0.01 0.36 5.74 -51.93 -0.30 0.06 16 32 H 0.01 0.30 5.93 -51.93 -0.31 -0.01 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.08 1.44 7.83 -51.93 -0.41 1.03 16 35 H 0.04 0.72 4.97 -51.93 -0.26 0.46 16 36 H 0.05 0.55 6.68 -51.93 -0.35 0.20 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.37 2.86 9.12 45.56 0.42 3.28 16 LS Contribution 283.64 15.07 4.27 4.27 Total: -1.00 -31.99 283.64 -7.34 -39.33 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.45 Total: 0.91 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -0.67 Total: -16.02 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.37 Total: -38.39 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.47 Total: -7.61 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.99 -7.34 -39.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598645843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.012 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds