Wall clock time and date at job start Sun Mar 29 2020 22:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.57601 * 2 1 4 4 C 1.53123 * 109.52198 * 120.15836 * 2 1 3 5 5 C 1.53039 * 109.31189 * 62.27073 * 4 2 1 6 6 N 1.46842 * 109.52266 * 59.15550 * 5 4 2 7 7 C 1.46910 * 110.99703 * 174.16402 * 6 5 4 8 8 C 1.53001 * 109.47153 * 66.04611 * 7 6 5 9 9 C 1.50696 * 109.47089 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00038 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00062 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00200 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00085 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46993 * 89.99755 * 13 11 9 15 15 H 1.48497 * 109.47435 * 209.99811 * 13 11 9 16 16 H 1.48503 * 109.47036 * 330.00146 * 13 11 9 17 17 C 1.46849 * 111.20050 * 298.25785 * 6 5 4 18 18 C 1.53036 * 109.52274 * 61.74759 * 17 6 5 19 19 H 1.09000 * 109.50390 * 60.75234 * 18 17 6 20 20 C 1.52994 * 109.50432 * 180.88126 * 18 17 6 21 21 O 1.42901 * 109.46610 * 294.99604 * 20 18 17 22 22 H 1.09006 * 109.46735 * 299.84309 * 1 2 3 23 23 H 1.09000 * 109.46901 * 59.84175 * 1 2 3 24 24 H 1.08994 * 109.47213 * 179.84112 * 1 2 3 25 25 H 1.09002 * 109.50371 * 302.30623 * 4 2 1 26 26 H 1.09003 * 109.50070 * 182.22783 * 4 2 1 27 27 H 1.08995 * 109.46501 * 179.17754 * 5 4 2 28 28 H 1.09009 * 109.45500 * 299.14277 * 5 4 2 29 29 H 1.08996 * 109.46709 * 186.04933 * 7 6 5 30 30 H 1.09002 * 109.46552 * 306.04948 * 7 6 5 31 31 H 1.08995 * 109.47022 * 300.00315 * 8 7 6 32 32 H 1.09001 * 109.46710 * 59.99819 * 8 7 6 33 33 H 0.96999 * 120.00375 * 180.02562 * 12 11 9 34 34 H 1.09001 * 109.46071 * 181.75754 * 17 6 5 35 35 H 1.09002 * 109.46350 * 301.73871 * 17 6 5 36 36 H 1.08997 * 109.47715 * 54.99438 * 20 18 17 37 37 H 1.08999 * 109.47133 * 175.00217 * 20 18 17 38 38 H 0.96707 * 113.99721 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 1.2479 5 6 1.5775 -2.1829 1.2122 6 7 2.0932 -2.8327 0.0006 7 6 1.7838 -4.2688 0.0011 8 6 0.2695 -4.4643 -0.0975 9 6 -0.0478 -5.9375 -0.0977 10 1 0.7507 -6.6619 -0.0334 11 6 -1.3574 -6.3606 -0.1798 12 7 -1.6343 -7.6462 -0.1804 13 14 -2.7384 -5.1077 -0.2917 14 1 -3.0100 -4.7964 -1.7180 15 1 -3.9639 -5.6644 0.3355 16 1 -2.3391 -3.8661 0.4186 17 6 1.5766 -2.1835 -1.2111 18 6 2.0409 -0.7257 -1.2479 19 1 3.1302 -0.6911 -1.2677 20 6 1.4843 -0.0437 -2.4992 21 8 2.0498 -0.6497 -3.6632 22 1 -0.3633 0.5114 0.8915 23 1 -0.3633 0.5163 -0.8886 24 1 -0.3633 -1.0276 -0.0028 25 1 1.6458 -0.2387 2.1394 26 1 3.1310 -0.6904 1.2678 27 1 1.9527 -2.7052 2.0922 28 1 0.4879 -2.2169 1.2069 29 1 2.2680 -4.7450 -0.8515 30 1 2.1489 -4.7187 0.9243 31 1 -0.2145 -3.9880 0.7550 32 1 -0.0955 -4.0142 -1.0207 33 1 -2.5557 -7.9439 -0.2386 34 1 1.9513 -2.7062 -2.0911 35 1 0.4871 -2.2175 -1.2049 36 1 0.4002 -0.1550 -2.5219 37 1 1.7406 1.0155 -2.4801 38 1 1.7412 -0.2661 -4.4956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598645843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:33 Heat of formation + Delta-G solvation = -89.971828 kcal Electronic energy + Delta-G solvation = -16876.342373 eV Core-core repulsion = 14330.871695 eV Total energy + Delta-G solvation = -2545.470678 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87362 -37.77302 -36.30430 -34.72042 -32.35381 -31.66864 -28.68697 -27.01938 -26.04764 -24.31807 -22.81470 -21.68661 -19.30061 -18.97867 -18.19219 -16.84333 -16.56424 -16.43059 -15.68166 -15.54100 -15.18071 -14.89327 -14.57344 -14.35300 -14.21782 -13.60101 -13.33709 -12.96056 -12.89062 -12.68175 -12.43327 -12.24410 -12.14628 -11.90832 -11.55826 -11.51414 -11.42295 -11.20546 -11.02263 -10.81877 -10.75019 -9.07661 -8.35637 -6.39941 1.26764 1.28389 1.40101 2.28487 2.98478 3.05689 3.36008 3.81714 3.87074 4.10067 4.14145 4.34265 4.38757 4.43546 4.49888 4.54719 4.60238 4.65569 4.73524 4.77791 4.82927 4.89680 4.98378 5.09588 5.13832 5.18644 5.27584 5.33230 5.37920 5.40526 5.49888 5.57587 6.07962 6.28602 6.30199 6.68421 6.96650 7.24416 8.81040 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027248 B = 0.007920 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.355436 B = 3534.371271 C = 3666.276016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.080 4.080 3 H 0.099 0.901 4 C -0.103 4.103 5 C 0.044 3.956 6 N -0.539 5.539 7 C 0.076 3.924 8 C -0.030 4.030 9 C -0.532 4.532 10 H 0.034 0.966 11 C 0.007 3.993 12 N -0.947 5.947 13 Si 0.949 3.051 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.253 1.253 17 C 0.064 3.936 18 C -0.076 4.076 19 H 0.076 0.924 20 C 0.081 3.919 21 O -0.595 6.595 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.031 0.969 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.016 0.984 32 H 0.011 0.989 33 H 0.267 0.733 34 H 0.055 0.945 35 H 0.024 0.976 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.520 21.504 -1.377 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.099 4.099 3 H 0.117 0.883 4 C -0.141 4.141 5 C -0.084 4.084 6 N -0.262 5.262 7 C -0.052 4.052 8 C -0.069 4.069 9 C -0.570 4.570 10 H 0.053 0.947 11 C -0.190 4.190 12 N -0.588 5.588 13 Si 0.772 3.228 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.177 1.177 17 C -0.064 4.064 18 C -0.095 4.095 19 H 0.094 0.906 20 C 0.004 3.996 21 O -0.403 6.403 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.210 21.076 -0.925 21.730 hybrid contribution -1.932 -0.408 -0.543 2.048 sum 3.278 20.667 -1.468 20.977 Atomic orbital electron populations 1.22032 0.95573 1.00988 1.02787 1.21133 0.95556 0.99892 0.93274 0.88251 1.21601 1.01585 0.92747 0.98157 1.22221 0.97237 0.96365 0.92528 1.62316 1.58780 1.02302 1.02761 1.21911 0.94385 0.87802 1.01113 1.19984 0.96167 0.94916 0.95816 1.21387 0.93045 0.92308 1.50311 0.94716 1.25983 1.01724 0.97179 0.94091 1.70058 1.20372 1.16090 1.52267 0.85682 0.78187 0.79723 0.79212 1.19220 1.20367 1.17692 1.22025 0.96707 0.95387 0.92244 1.21185 1.01044 0.93068 0.94208 0.90569 1.22302 0.96506 0.96331 0.84500 1.86486 1.71831 1.64563 1.17400 0.91254 0.91380 0.94992 0.89540 0.90796 0.91292 0.95742 0.92541 0.91808 0.96586 0.97083 0.92364 0.92661 0.95830 0.93442 0.90953 0.75584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 8.19 71.98 0.59 -2.78 16 2 C -0.08 -1.66 2.78 -10.71 -0.03 -1.69 16 3 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.10 -2.33 5.60 30.65 0.17 -2.16 16 5 C 0.04 1.38 4.80 86.33 0.41 1.80 16 6 N -0.54 -19.32 4.86 -896.33 -4.35 -23.68 16 7 C 0.08 3.27 5.30 86.30 0.46 3.73 16 8 C -0.03 -1.49 3.34 29.85 0.10 -1.39 16 9 C -0.53 -31.94 9.66 25.60 0.25 -31.69 16 10 H 0.03 2.28 7.99 -2.91 -0.02 2.25 16 11 C 0.01 0.45 5.47 84.65 0.46 0.91 16 12 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 13 Si 0.95 45.75 27.47 68.60 1.88 47.64 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 17 C 0.06 2.18 3.76 86.32 0.32 2.51 16 18 C -0.08 -1.92 2.37 -10.74 -0.03 -1.94 16 19 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 20 C 0.08 1.68 5.86 71.98 0.42 2.10 16 21 O -0.59 -13.77 13.21 -148.98 -1.97 -15.74 16 22 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.07 1.24 6.52 -2.39 -0.02 1.23 16 24 H 0.03 0.90 4.92 -2.39 -0.01 0.88 16 25 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 28 H 0.02 0.84 5.13 -2.38 -0.01 0.83 16 29 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 30 H 0.06 2.75 8.06 -2.39 -0.02 2.73 16 31 H 0.02 0.79 5.74 -2.39 -0.01 0.77 16 32 H 0.01 0.55 5.93 -2.39 -0.01 0.53 16 33 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 34 H 0.05 2.08 7.83 -2.39 -0.02 2.07 16 35 H 0.02 0.87 4.97 -2.39 -0.01 0.86 16 36 H 0.05 0.97 6.68 -2.39 -0.02 0.96 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.39 5.17 9.12 -74.05 -0.68 4.49 16 Total: -1.00 -70.49 283.64 -0.70 -71.19 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.31 Total: 11.60 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 3.13 Total: -30.60 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -4.06 Total: -84.09 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -1.97 Total: -15.74 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.64 kcal Total: -70.49 -0.70 -71.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598645843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.779 kcal (2) G-P(sol) polarization free energy of solvation -70.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds