Wall clock time and date at job start Sun Mar 29 2020 22:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.57842 * 2 1 4 4 C 1.53123 * 109.52019 * 120.15820 * 2 1 3 5 5 C 1.53043 * 109.27530 * 177.56002 * 4 2 1 6 6 N 1.46843 * 109.52008 * 300.81709 * 5 4 2 7 7 C 1.46906 * 111.00149 * 185.84152 * 6 5 4 8 8 C 1.52999 * 109.47077 * 66.04234 * 7 6 5 9 9 C 1.50696 * 109.47110 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00012 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99842 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00069 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99806 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46845 * 90.00621 * 13 11 9 15 15 H 1.48503 * 109.47399 * 210.00111 * 13 11 9 16 16 H 1.48498 * 109.47295 * 330.00717 * 13 11 9 17 17 C 1.46849 * 111.20153 * 61.74620 * 6 5 4 18 18 C 1.53042 * 109.51933 * 298.25547 * 17 6 5 19 19 H 1.08988 * 109.50301 * 299.23549 * 18 17 6 20 20 C 1.53005 * 109.53202 * 179.13594 * 18 17 6 21 21 O 1.42901 * 109.46934 * 65.17922 * 20 18 17 22 22 H 1.09002 * 109.46657 * 299.84078 * 1 2 3 23 23 H 1.08997 * 109.46909 * 59.83958 * 1 2 3 24 24 H 1.08999 * 109.47425 * 179.84938 * 1 2 3 25 25 H 1.08992 * 109.50485 * 57.62026 * 4 2 1 26 26 H 1.08996 * 109.50274 * 297.49478 * 4 2 1 27 27 H 1.08997 * 109.46302 * 180.80421 * 5 4 2 28 28 H 1.08996 * 109.46478 * 60.83148 * 5 4 2 29 29 H 1.09005 * 109.46522 * 306.04778 * 7 6 5 30 30 H 1.08996 * 109.47381 * 186.05288 * 7 6 5 31 31 H 1.09008 * 109.46748 * 60.00386 * 8 7 6 32 32 H 1.08991 * 109.47440 * 300.00590 * 8 7 6 33 33 H 0.97000 * 119.99838 * 359.97438 * 12 11 9 34 34 H 1.09000 * 109.46329 * 58.26739 * 17 6 5 35 35 H 1.08994 * 109.46949 * 178.23963 * 17 6 5 36 36 H 1.09000 * 109.46603 * 185.17843 * 20 18 17 37 37 H 1.08998 * 109.47496 * 305.17756 * 20 18 17 38 38 H 0.96701 * 113.99611 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0417 -0.7251 1.2479 5 6 3.5708 -0.7752 1.2117 6 7 4.0102 -1.4790 0.0001 7 6 5.4670 -1.6679 0.0000 8 6 5.8582 -2.6171 1.1345 9 6 7.3527 -2.8104 1.1348 10 1 7.9626 -2.3064 0.3997 11 6 7.9415 -3.6308 2.0736 12 7 7.1988 -4.2450 2.9684 13 14 9.7941 -3.8699 2.0744 14 1 10.4255 -2.8419 2.9404 15 1 10.1185 -5.2225 2.5948 16 1 10.3113 -3.7354 0.6889 17 6 3.5708 -0.7753 -1.2116 18 6 2.0417 -0.7252 -1.2478 19 1 1.6447 -1.7400 -1.2673 20 6 1.5839 0.0267 -2.4992 21 8 1.9613 -0.7115 -3.6631 22 1 -0.3633 0.5114 0.8914 23 1 -0.3633 0.5163 -0.8885 24 1 -0.3634 -1.0276 -0.0027 25 1 1.6447 -1.7399 1.2675 26 1 1.7162 -0.1890 2.1393 27 1 3.9378 -1.3033 2.0917 28 1 3.9675 0.2400 1.2059 29 1 5.9581 -0.7057 0.1457 30 1 5.7781 -2.0939 -0.9538 31 1 5.3670 -3.5793 0.9888 32 1 5.5471 -2.1911 2.0882 33 1 6.2368 -4.1205 2.9682 34 1 3.9674 0.2400 -1.2060 35 1 3.9377 -1.3035 -2.0916 36 1 0.5002 0.1421 -2.4776 37 1 2.0536 1.0100 -2.5245 38 1 1.7020 -0.2931 -4.4955 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598645844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:35 Heat of formation + Delta-G solvation = -100.607520 kcal Electronic energy + Delta-G solvation = -16338.764050 eV Core-core repulsion = 13792.832174 eV Total energy + Delta-G solvation = -2545.931876 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.61356 -37.82280 -36.44738 -35.06238 -32.39891 -31.56642 -28.76760 -26.78830 -25.61027 -23.69671 -23.08116 -21.65258 -20.70186 -18.95928 -18.25098 -16.83771 -16.51587 -15.99275 -15.66320 -15.34734 -15.19039 -15.03822 -14.59718 -14.54940 -13.89914 -13.59343 -13.33346 -13.19891 -12.74686 -12.69927 -12.50717 -12.11307 -12.06465 -11.94834 -11.84687 -11.58600 -11.25950 -11.11743 -10.80840 -10.66131 -10.54202 -9.28758 -8.72433 -6.42379 1.51000 1.61168 1.79261 2.54455 2.93541 3.13877 3.31152 3.73457 3.77221 3.96794 4.04962 4.20815 4.29637 4.39181 4.40792 4.50342 4.54502 4.60406 4.68830 4.74734 4.80283 4.84001 4.89492 4.99525 5.11643 5.13329 5.19805 5.21306 5.34915 5.39955 5.50962 5.87323 6.13711 6.18208 6.22938 6.54767 6.95808 7.40429 8.68720 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042375 B = 0.005487 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.613128 B = 5101.819979 C = 5581.506937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.076 0.924 4 C -0.104 4.104 5 C 0.052 3.948 6 N -0.553 5.553 7 C 0.087 3.913 8 C 0.022 3.978 9 C -0.623 4.623 10 H 0.050 0.950 11 C -0.037 4.037 12 N -0.935 5.935 13 Si 1.123 2.877 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.269 1.269 17 C 0.068 3.932 18 C -0.077 4.077 19 H 0.065 0.935 20 C 0.084 3.916 21 O -0.595 6.595 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.029 0.971 29 H 0.018 0.982 30 H 0.057 0.943 31 H -0.013 1.013 32 H -0.007 1.007 33 H 0.254 0.746 34 H 0.028 0.972 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.947 12.173 -9.359 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.095 0.905 4 C -0.141 4.141 5 C -0.076 4.076 6 N -0.278 5.278 7 C -0.041 4.041 8 C -0.015 4.015 9 C -0.661 4.661 10 H 0.068 0.932 11 C -0.235 4.235 12 N -0.573 5.573 13 Si 0.944 3.056 14 H -0.195 1.195 15 H -0.206 1.206 16 H -0.194 1.194 17 C -0.060 4.060 18 C -0.096 4.096 19 H 0.083 0.917 20 C 0.006 3.994 21 O -0.404 6.404 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.005 0.995 32 H 0.011 0.989 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.714 10.550 -8.152 18.423 hybrid contribution -0.927 1.593 -0.969 2.082 sum -13.641 12.142 -9.122 20.413 Atomic orbital electron populations 1.21852 0.92919 1.02234 1.02940 1.21120 0.97181 0.98897 0.92706 0.90543 1.21626 0.92513 1.01214 0.98796 1.22136 0.97321 0.95573 0.92564 1.61930 1.12637 1.50235 1.02999 1.21802 0.86137 0.97150 0.99018 1.19081 0.95311 0.93708 0.93391 1.22465 0.93503 1.31844 1.18274 0.93211 1.27519 1.11467 0.92450 0.92032 1.70879 1.07055 1.43150 1.36172 0.82870 0.68572 0.77144 0.77032 1.19547 1.20595 1.19408 1.22050 0.96385 0.95745 0.91835 1.21194 0.93523 1.00294 0.94545 0.91656 1.22276 0.99415 0.93587 0.84077 1.86495 1.83882 1.52546 1.17438 0.91399 0.90909 0.92934 0.92170 0.89537 0.92938 0.95266 0.96382 0.92484 0.99494 0.98888 0.93617 0.95333 0.91975 0.90822 0.92776 0.75412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.90 71.98 0.64 -1.62 16 2 C -0.08 -1.74 2.29 -10.71 -0.02 -1.76 16 3 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 4 C -0.10 -2.78 5.38 30.65 0.16 -2.62 16 5 C 0.05 1.85 5.29 86.33 0.46 2.30 16 6 N -0.55 -21.96 4.65 -896.35 -4.17 -26.13 16 7 C 0.09 4.04 4.90 86.30 0.42 4.46 16 8 C 0.02 1.26 4.22 29.85 0.13 1.39 16 9 C -0.62 -37.55 9.11 25.60 0.23 -37.32 16 10 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 11 C -0.04 -2.25 5.46 84.65 0.46 -1.79 16 12 N -0.94 -60.27 13.65 21.45 0.29 -59.97 16 13 Si 1.12 51.87 29.90 68.60 2.05 53.92 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 C 0.07 2.20 4.63 86.33 0.40 2.60 16 18 C -0.08 -1.95 2.09 -10.74 -0.02 -1.98 16 19 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 20 C 0.08 1.59 6.26 71.98 0.45 2.04 16 21 O -0.60 -12.63 13.22 -148.98 -1.97 -14.60 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.07 0.90 6.41 -2.39 -0.02 0.88 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.05 2.16 6.22 -2.39 -0.01 2.15 16 28 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.02 0.83 8.12 -2.38 -0.02 0.81 16 30 H 0.06 2.67 7.98 -2.39 -0.02 2.66 16 31 H -0.01 -0.81 8.01 -2.38 -0.02 -0.83 16 32 H -0.01 -0.41 6.30 -2.39 -0.02 -0.43 16 33 H 0.25 16.74 7.22 -92.71 -0.67 16.07 16 34 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 2.19 7.72 -2.39 -0.02 2.18 16 36 H 0.07 1.03 6.27 -2.39 -0.01 1.02 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.40 4.22 9.12 -74.06 -0.68 3.54 16 Total: -1.00 -72.22 295.68 -0.05 -72.26 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.44 Total: 8.81 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 3.31 Total: -34.29 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -3.88 Total: -86.10 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -1.97 Total: -14.60 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.92 kcal Total: -72.22 -0.05 -72.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598645844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.344 kcal (2) G-P(sol) polarization free energy of solvation -72.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds