Wall clock time and date at job start Sun Mar 29 2020 22:14:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08998 * 109.47175 * 2 1
4 4 C 1.52991 * 109.47268 * 239.99512 * 2 1 3
5 5 C 1.50703 * 109.47307 * 65.00070 * 4 2 1
6 6 H 1.08004 * 119.99843 * 0.02562 * 5 4 2
7 7 C 1.37875 * 120.00221 * 180.02562 * 5 4 2
8 8 N 1.31510 * 120.00156 * 359.97438 * 7 5 4
9 9 Si 1.86803 * 120.00084 * 180.02562 * 7 5 4
10 10 H 1.48509 * 109.46894 * 59.99744 * 9 7 5
11 11 H 1.48498 * 109.47232 * 179.97438 * 9 7 5
12 12 H 1.48496 * 109.46936 * 299.99823 * 9 7 5
13 13 C 1.52998 * 109.46740 * 119.99398 * 2 1 3
14 14 N 1.46897 * 109.47683 * 295.71629 * 13 2 1
15 15 C 1.48563 * 111.00036 * 294.34096 * 14 13 2
16 16 C 1.54384 * 104.59440 * 200.95837 * 15 14 13
17 17 H 1.09004 * 110.31668 * 264.85399 * 16 15 14
18 18 O 1.42890 * 110.32384 * 142.74639 * 16 15 14
19 19 C 1.54257 * 105.06042 * 23.84768 * 16 15 14
20 20 C 1.48552 * 111.00340 * 178.91558 * 14 13 2
21 21 H 1.09000 * 110.41147 * 40.26691 * 20 14 13
22 22 C 1.53002 * 110.41454 * 277.93811 * 20 14 13
23 23 H 1.08999 * 109.47069 * 64.83719 * 1 2 3
24 24 H 1.08993 * 109.47289 * 184.83720 * 1 2 3
25 25 H 1.08999 * 109.47470 * 304.84078 * 1 2 3
26 26 H 1.09001 * 109.47649 * 184.99950 * 4 2 1
27 27 H 1.08998 * 109.47470 * 305.00220 * 4 2 1
28 28 H 0.97000 * 120.00566 * 180.02562 * 8 7 5
29 29 H 1.09008 * 109.46687 * 175.71734 * 13 2 1
30 30 H 1.09003 * 109.47158 * 55.72243 * 13 2 1
31 31 H 1.08993 * 110.41244 * 82.17528 * 15 14 13
32 32 H 1.09002 * 110.40775 * 319.73352 * 15 14 13
33 33 H 0.96697 * 114.00232 * 61.45169 * 18 16 15
34 34 H 1.08999 * 110.32444 * 118.90175 * 19 16 15
35 35 H 1.08999 * 110.32780 * 241.10873 * 19 16 15
36 36 H 1.09001 * 109.46520 * 60.00061 * 22 20 14
37 37 H 1.09001 * 109.47272 * 180.02562 * 22 20 14
38 38 H 1.08992 * 109.46988 * 299.99661 * 22 20 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 1.6414 0.0569 -2.4766
6 1 1.0807 0.9744 -2.3757
7 6 1.9924 -0.4025 -3.7282
8 7 2.6756 -1.5195 -3.8510
9 14 1.4989 0.5625 -5.2497
10 1 2.0921 1.9225 -5.1872
11 1 1.9938 -0.1377 -6.4621
12 1 0.0190 0.6701 -5.3091
13 6 2.0399 -0.7211 1.2493
14 7 1.6366 0.0285 2.4465
15 6 2.3062 1.3538 2.4955
16 6 2.2363 1.7703 3.9805
17 1 1.3696 2.4081 4.1542
18 8 3.4349 2.4477 4.3629
19 6 2.0959 0.4475 4.7616
20 6 2.0929 -0.6570 3.6828
21 1 3.0972 -1.0580 3.5466
22 6 1.1201 -1.7751 4.0631
23 1 -0.3633 0.4370 -0.9301
24 1 -0.3633 -1.0239 0.0867
25 1 -0.3634 0.5871 0.8434
26 1 3.1263 -0.7996 -1.2055
27 1 1.6054 -1.7198 -1.2950
28 1 2.9229 -1.8426 -4.7316
29 1 3.1273 -0.7881 1.2118
30 1 1.6153 -1.7243 1.2886
31 1 1.7727 2.0725 1.8736
32 1 3.3439 1.2674 2.1734
33 1 3.5987 3.2645 3.8720
34 1 2.9413 0.3150 5.4367
35 1 1.1595 0.4346 5.3192
36 1 1.0679 -2.5023 3.2528
37 1 1.4689 -2.2668 4.9712
38 1 0.1306 -1.3524 4.2365
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602628727.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:14:14
Heat of formation + Delta-G solvation = -68.389237 kcal
Electronic energy + Delta-G solvation = -16362.429114 eV
Core-core repulsion = 13817.894328 eV
Total energy + Delta-G solvation = -2544.534787 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.45922 -36.44806 -34.90267 -32.42845 -30.83837 -29.90880 -26.79134 -25.84073
-24.81788 -22.73877 -21.08222 -20.02471 -18.69049 -17.65045 -16.38156 -15.60239
-14.86841 -14.48682 -14.38015 -14.16590 -13.84103 -13.19591 -12.77413 -12.57332
-12.29299 -12.02484 -11.73698 -11.44138 -11.36769 -11.14447 -10.99879 -10.83026
-10.69212 -10.60317 -10.26765 -10.21364 -9.96388 -9.62601 -9.13217 -8.95402
-8.32169 -8.21303 -5.96997 -3.98292 3.34443 3.38893 3.41224 3.93869
4.41070 4.49480 4.60478 4.75746 4.99870 5.26379 5.38561 5.43498
5.52463 5.62074 5.71964 5.74194 5.88403 5.92399 5.95199 6.01718
6.13879 6.17399 6.31810 6.41958 6.52562 6.69039 7.01699 7.02426
7.19864 7.25622 7.39821 7.56997 7.69877 7.85925 8.03035 8.46994
9.07768 9.64942 11.14542
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.039244 B = 0.005689 C = 0.005342
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 713.320667 B = 4920.505645 C = 5240.517357
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.080 4.080
3 H 0.053 0.947
4 C 0.027 3.973
5 C -0.513 4.513
6 H 0.055 0.945
7 C 0.056 3.944
8 N -0.897 5.897
9 Si 0.890 3.110
10 H -0.278 1.278
11 H -0.288 1.288
12 H -0.277 1.277
13 C 0.050 3.950
14 N -0.498 5.498
15 C 0.002 3.998
16 C 0.097 3.903
17 H 0.066 0.934
18 O -0.569 6.569
19 C -0.112 4.112
20 C 0.055 3.945
21 H 0.051 0.949
22 C -0.135 4.135
23 H 0.055 0.945
24 H 0.039 0.961
25 H 0.039 0.961
26 H 0.012 0.988
27 H 0.016 0.984
28 H 0.260 0.740
29 H 0.030 0.970
30 H 0.071 0.929
31 H 0.085 0.915
32 H 0.053 0.947
33 H 0.378 0.622
34 H 0.077 0.923
35 H 0.079 0.921
36 H 0.058 0.942
37 H 0.054 0.946
38 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.573 4.115 15.529 16.142
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.098 4.098
3 H 0.072 0.928
4 C -0.010 4.010
5 C -0.551 4.551
6 H 0.073 0.927
7 C -0.145 4.145
8 N -0.537 5.537
9 Si 0.718 3.282
10 H -0.203 1.203
11 H -0.214 1.214
12 H -0.203 1.203
13 C -0.077 4.077
14 N -0.223 5.223
15 C -0.127 4.127
16 C 0.038 3.962
17 H 0.084 0.916
18 O -0.374 6.374
19 C -0.150 4.150
20 C -0.054 4.054
21 H 0.069 0.931
22 C -0.192 4.192
23 H 0.074 0.926
24 H 0.058 0.942
25 H 0.058 0.942
26 H 0.030 0.970
27 H 0.034 0.966
28 H 0.070 0.930
29 H 0.048 0.952
30 H 0.090 0.910
31 H 0.103 0.897
32 H 0.071 0.929
33 H 0.225 0.775
34 H 0.095 0.905
35 H 0.098 0.902
36 H 0.077 0.923
37 H 0.073 0.927
38 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -2.033 3.523 15.781 16.297
hybrid contribution 0.683 0.788 -1.464 1.797
sum -1.350 4.311 14.317 15.013
Atomic orbital electron populations
1.21581 0.95707 1.00362 1.00296 1.21189 0.95975 0.98921 0.93763
0.92830 1.19117 0.95867 0.95598 0.90452 1.21190 1.34695 1.08256
0.90990 0.92656 1.25017 0.95330 0.95090 0.99074 1.69953 1.39018
1.21227 1.23486 0.86691 0.78904 0.80089 0.82507 1.20338 1.21356
1.20254 1.22512 0.97548 0.97790 0.89896 1.65406 1.53042 1.02121
1.01753 1.23822 0.98566 0.93735 0.96537 1.22589 0.86671 0.93666
0.93308 0.91643 1.86513 1.43686 1.41695 1.65533 1.22371 1.02603
0.92503 0.97543 1.22649 0.97427 0.94647 0.90654 0.93145 1.21694
0.99347 0.97442 1.00748 0.92589 0.94210 0.94156 0.97006 0.96573
0.93035 0.95202 0.91013 0.89676 0.92882 0.77455 0.90474 0.90245
0.92326 0.92673 0.91898
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.40 8.90 37.16 0.33 -2.07 16
2 C -0.08 -1.65 2.28 -90.62 -0.21 -1.85 16
3 H 0.05 1.12 6.90 -51.93 -0.36 0.76 16
4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16
5 C -0.51 -14.45 8.34 -34.44 -0.29 -14.74 16
6 H 0.06 1.52 7.08 -52.48 -0.37 1.14 16
7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16
8 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16
9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16
10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
13 C 0.05 0.90 4.15 -3.83 -0.02 0.88 16
14 N -0.50 -7.57 4.60 -222.14 -1.02 -8.59 16
15 C 0.00 0.03 5.31 -2.18 -0.01 0.02 16
16 C 0.10 1.15 4.42 -25.35 -0.11 1.04 16
17 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
18 O -0.57 -6.65 13.27 -35.23 -0.47 -7.11 16
19 C -0.11 -1.31 6.36 -25.35 -0.16 -1.47 16
20 C 0.05 0.72 2.88 -66.07 -0.19 0.53 16
21 H 0.05 0.70 7.98 -51.93 -0.41 0.29 16
22 C -0.13 -1.56 9.37 37.16 0.35 -1.21 16
23 H 0.06 1.18 6.83 -51.93 -0.35 0.82 16
24 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16
25 H 0.04 0.71 7.87 -51.93 -0.41 0.30 16
26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16
27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
29 H 0.03 0.55 7.97 -51.92 -0.41 0.14 16
30 H 0.07 1.28 7.34 -51.93 -0.38 0.90 16
31 H 0.08 1.20 7.60 -51.93 -0.39 0.80 16
32 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16
33 H 0.38 2.92 9.11 45.56 0.41 3.34 16
34 H 0.08 0.89 7.98 -51.93 -0.41 0.48 16
35 H 0.08 0.82 7.83 -51.93 -0.41 0.42 16
36 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16
37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
38 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16
LS Contribution 300.73 15.07 4.53 4.53
Total: -1.00 -30.78 300.73 -7.73 -38.51
By element:
Atomic # 1 Polarization: 5.07 SS G_CDS: -5.96 Total: -0.89 kcal
Atomic # 6 Polarization: -16.26 SS G_CDS: -0.53 Total: -16.79 kcal
Atomic # 7 Polarization: -34.71 SS G_CDS: -0.28 Total: -35.00 kcal
Atomic # 8 Polarization: -6.65 SS G_CDS: -0.47 Total: -7.11 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal
Total LS contribution 4.53 Total: 4.53 kcal
Total: -30.78 -7.73 -38.51 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602628727.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.883 kcal
(2) G-P(sol) polarization free energy of solvation -30.776 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.659 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds