Wall clock time and date at job start Sun Mar 29 2020 22:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47175 * 2 1 4 4 C 1.52991 * 109.47268 * 239.99512 * 2 1 3 5 5 C 1.50703 * 109.47307 * 65.00070 * 4 2 1 6 6 H 1.08004 * 119.99843 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00221 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00156 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00084 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46894 * 59.99744 * 9 7 5 11 11 H 1.48498 * 109.47232 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46936 * 299.99823 * 9 7 5 13 13 C 1.52998 * 109.46740 * 119.99398 * 2 1 3 14 14 N 1.46897 * 109.47683 * 295.71629 * 13 2 1 15 15 C 1.48563 * 111.00036 * 294.34096 * 14 13 2 16 16 C 1.54384 * 104.59440 * 200.95837 * 15 14 13 17 17 H 1.09004 * 110.31668 * 264.85399 * 16 15 14 18 18 O 1.42890 * 110.32384 * 142.74639 * 16 15 14 19 19 C 1.54257 * 105.06042 * 23.84768 * 16 15 14 20 20 C 1.48552 * 111.00340 * 178.91558 * 14 13 2 21 21 H 1.09000 * 110.41147 * 40.26691 * 20 14 13 22 22 C 1.53002 * 110.41454 * 277.93811 * 20 14 13 23 23 H 1.08999 * 109.47069 * 64.83719 * 1 2 3 24 24 H 1.08993 * 109.47289 * 184.83720 * 1 2 3 25 25 H 1.08999 * 109.47470 * 304.84078 * 1 2 3 26 26 H 1.09001 * 109.47649 * 184.99950 * 4 2 1 27 27 H 1.08998 * 109.47470 * 305.00220 * 4 2 1 28 28 H 0.97000 * 120.00566 * 180.02562 * 8 7 5 29 29 H 1.09008 * 109.46687 * 175.71734 * 13 2 1 30 30 H 1.09003 * 109.47158 * 55.72243 * 13 2 1 31 31 H 1.08993 * 110.41244 * 82.17528 * 15 14 13 32 32 H 1.09002 * 110.40775 * 319.73352 * 15 14 13 33 33 H 0.96697 * 114.00232 * 61.45169 * 18 16 15 34 34 H 1.08999 * 110.32444 * 118.90175 * 19 16 15 35 35 H 1.08999 * 110.32780 * 241.10873 * 19 16 15 36 36 H 1.09001 * 109.46520 * 60.00061 * 22 20 14 37 37 H 1.09001 * 109.47272 * 180.02562 * 22 20 14 38 38 H 1.08992 * 109.46988 * 299.99661 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4766 6 1 1.0807 0.9744 -2.3757 7 6 1.9924 -0.4025 -3.7282 8 7 2.6756 -1.5195 -3.8510 9 14 1.4989 0.5625 -5.2497 10 1 2.0921 1.9225 -5.1872 11 1 1.9938 -0.1377 -6.4621 12 1 0.0190 0.6701 -5.3091 13 6 2.0399 -0.7211 1.2493 14 7 1.6366 0.0285 2.4465 15 6 2.3062 1.3538 2.4955 16 6 2.2363 1.7703 3.9805 17 1 1.3696 2.4081 4.1542 18 8 3.4349 2.4477 4.3629 19 6 2.0959 0.4475 4.7616 20 6 2.0929 -0.6570 3.6828 21 1 3.0972 -1.0580 3.5466 22 6 1.1201 -1.7751 4.0631 23 1 -0.3633 0.4370 -0.9301 24 1 -0.3633 -1.0239 0.0867 25 1 -0.3634 0.5871 0.8434 26 1 3.1263 -0.7996 -1.2055 27 1 1.6054 -1.7198 -1.2950 28 1 2.9229 -1.8426 -4.7316 29 1 3.1273 -0.7881 1.2118 30 1 1.6153 -1.7243 1.2886 31 1 1.7727 2.0725 1.8736 32 1 3.3439 1.2674 2.1734 33 1 3.5987 3.2645 3.8720 34 1 2.9413 0.3150 5.4367 35 1 1.1595 0.4346 5.3192 36 1 1.0679 -2.5023 3.2528 37 1 1.4689 -2.2668 4.9712 38 1 0.1306 -1.3524 4.2365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602628727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:14 Heat of formation + Delta-G solvation = -68.389237 kcal Electronic energy + Delta-G solvation = -16362.429114 eV Core-core repulsion = 13817.894328 eV Total energy + Delta-G solvation = -2544.534787 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.45922 -36.44806 -34.90267 -32.42845 -30.83837 -29.90880 -26.79134 -25.84073 -24.81788 -22.73877 -21.08222 -20.02471 -18.69049 -17.65045 -16.38156 -15.60239 -14.86841 -14.48682 -14.38015 -14.16590 -13.84103 -13.19591 -12.77413 -12.57332 -12.29299 -12.02484 -11.73698 -11.44138 -11.36769 -11.14447 -10.99879 -10.83026 -10.69212 -10.60317 -10.26765 -10.21364 -9.96388 -9.62601 -9.13217 -8.95402 -8.32169 -8.21303 -5.96997 -3.98292 3.34443 3.38893 3.41224 3.93869 4.41070 4.49480 4.60478 4.75746 4.99870 5.26379 5.38561 5.43498 5.52463 5.62074 5.71964 5.74194 5.88403 5.92399 5.95199 6.01718 6.13879 6.17399 6.31810 6.41958 6.52562 6.69039 7.01699 7.02426 7.19864 7.25622 7.39821 7.56997 7.69877 7.85925 8.03035 8.46994 9.07768 9.64942 11.14542 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039244 B = 0.005689 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.320667 B = 4920.505645 C = 5240.517357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.050 3.950 14 N -0.498 5.498 15 C 0.002 3.998 16 C 0.097 3.903 17 H 0.066 0.934 18 O -0.569 6.569 19 C -0.112 4.112 20 C 0.055 3.945 21 H 0.051 0.949 22 C -0.135 4.135 23 H 0.055 0.945 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.012 0.988 27 H 0.016 0.984 28 H 0.260 0.740 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.378 0.622 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.573 4.115 15.529 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.077 4.077 14 N -0.223 5.223 15 C -0.127 4.127 16 C 0.038 3.962 17 H 0.084 0.916 18 O -0.374 6.374 19 C -0.150 4.150 20 C -0.054 4.054 21 H 0.069 0.931 22 C -0.192 4.192 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.225 0.775 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.033 3.523 15.781 16.297 hybrid contribution 0.683 0.788 -1.464 1.797 sum -1.350 4.311 14.317 15.013 Atomic orbital electron populations 1.21581 0.95707 1.00362 1.00296 1.21189 0.95975 0.98921 0.93763 0.92830 1.19117 0.95867 0.95598 0.90452 1.21190 1.34695 1.08256 0.90990 0.92656 1.25017 0.95330 0.95090 0.99074 1.69953 1.39018 1.21227 1.23486 0.86691 0.78904 0.80089 0.82507 1.20338 1.21356 1.20254 1.22512 0.97548 0.97790 0.89896 1.65406 1.53042 1.02121 1.01753 1.23822 0.98566 0.93735 0.96537 1.22589 0.86671 0.93666 0.93308 0.91643 1.86513 1.43686 1.41695 1.65533 1.22371 1.02603 0.92503 0.97543 1.22649 0.97427 0.94647 0.90654 0.93145 1.21694 0.99347 0.97442 1.00748 0.92589 0.94210 0.94156 0.97006 0.96573 0.93035 0.95202 0.91013 0.89676 0.92882 0.77455 0.90474 0.90245 0.92326 0.92673 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.90 37.16 0.33 -2.07 16 2 C -0.08 -1.65 2.28 -90.62 -0.21 -1.85 16 3 H 0.05 1.12 6.90 -51.93 -0.36 0.76 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.45 8.34 -34.44 -0.29 -14.74 16 6 H 0.06 1.52 7.08 -52.48 -0.37 1.14 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.05 0.90 4.15 -3.83 -0.02 0.88 16 14 N -0.50 -7.57 4.60 -222.14 -1.02 -8.59 16 15 C 0.00 0.03 5.31 -2.18 -0.01 0.02 16 16 C 0.10 1.15 4.42 -25.35 -0.11 1.04 16 17 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 18 O -0.57 -6.65 13.27 -35.23 -0.47 -7.11 16 19 C -0.11 -1.31 6.36 -25.35 -0.16 -1.47 16 20 C 0.05 0.72 2.88 -66.07 -0.19 0.53 16 21 H 0.05 0.70 7.98 -51.93 -0.41 0.29 16 22 C -0.13 -1.56 9.37 37.16 0.35 -1.21 16 23 H 0.06 1.18 6.83 -51.93 -0.35 0.82 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.71 7.87 -51.93 -0.41 0.30 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.03 0.55 7.97 -51.92 -0.41 0.14 16 30 H 0.07 1.28 7.34 -51.93 -0.38 0.90 16 31 H 0.08 1.20 7.60 -51.93 -0.39 0.80 16 32 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16 33 H 0.38 2.92 9.11 45.56 0.41 3.34 16 34 H 0.08 0.89 7.98 -51.93 -0.41 0.48 16 35 H 0.08 0.82 7.83 -51.93 -0.41 0.42 16 36 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -30.78 300.73 -7.73 -38.51 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.96 Total: -0.89 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -0.53 Total: -16.79 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.28 Total: -35.00 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.47 Total: -7.11 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.78 -7.73 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602628727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.883 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds