Wall clock time and date at job start Sun Mar 29 2020 22:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47175 * 2 1 4 4 C 1.52991 * 109.47268 * 239.99512 * 2 1 3 5 5 C 1.50703 * 109.47307 * 65.00070 * 4 2 1 6 6 H 1.08004 * 119.99843 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00221 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00156 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00084 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46894 * 59.99744 * 9 7 5 11 11 H 1.48498 * 109.47232 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46936 * 299.99823 * 9 7 5 13 13 C 1.52998 * 109.46740 * 119.99398 * 2 1 3 14 14 N 1.46897 * 109.47683 * 295.71629 * 13 2 1 15 15 C 1.48563 * 111.00036 * 294.34096 * 14 13 2 16 16 C 1.54384 * 104.59440 * 200.95837 * 15 14 13 17 17 H 1.09004 * 110.31668 * 264.85399 * 16 15 14 18 18 O 1.42890 * 110.32384 * 142.74639 * 16 15 14 19 19 C 1.54257 * 105.06042 * 23.84768 * 16 15 14 20 20 C 1.48552 * 111.00340 * 178.91558 * 14 13 2 21 21 H 1.09000 * 110.41147 * 40.26691 * 20 14 13 22 22 C 1.53002 * 110.41454 * 277.93811 * 20 14 13 23 23 H 1.08999 * 109.47069 * 64.83719 * 1 2 3 24 24 H 1.08993 * 109.47289 * 184.83720 * 1 2 3 25 25 H 1.08999 * 109.47470 * 304.84078 * 1 2 3 26 26 H 1.09001 * 109.47649 * 184.99950 * 4 2 1 27 27 H 1.08998 * 109.47470 * 305.00220 * 4 2 1 28 28 H 0.97000 * 120.00566 * 180.02562 * 8 7 5 29 29 H 1.09008 * 109.46687 * 175.71734 * 13 2 1 30 30 H 1.09003 * 109.47158 * 55.72243 * 13 2 1 31 31 H 1.08993 * 110.41244 * 82.17528 * 15 14 13 32 32 H 1.09002 * 110.40775 * 319.73352 * 15 14 13 33 33 H 0.96697 * 114.00232 * 61.45169 * 18 16 15 34 34 H 1.08999 * 110.32444 * 118.90175 * 19 16 15 35 35 H 1.08999 * 110.32780 * 241.10873 * 19 16 15 36 36 H 1.09001 * 109.46520 * 60.00061 * 22 20 14 37 37 H 1.09001 * 109.47272 * 180.02562 * 22 20 14 38 38 H 1.08992 * 109.46988 * 299.99661 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4766 6 1 1.0807 0.9744 -2.3757 7 6 1.9924 -0.4025 -3.7282 8 7 2.6756 -1.5195 -3.8510 9 14 1.4989 0.5625 -5.2497 10 1 2.0921 1.9225 -5.1872 11 1 1.9938 -0.1377 -6.4621 12 1 0.0190 0.6701 -5.3091 13 6 2.0399 -0.7211 1.2493 14 7 1.6366 0.0285 2.4465 15 6 2.3062 1.3538 2.4955 16 6 2.2363 1.7703 3.9805 17 1 1.3696 2.4081 4.1542 18 8 3.4349 2.4477 4.3629 19 6 2.0959 0.4475 4.7616 20 6 2.0929 -0.6570 3.6828 21 1 3.0972 -1.0580 3.5466 22 6 1.1201 -1.7751 4.0631 23 1 -0.3633 0.4370 -0.9301 24 1 -0.3633 -1.0239 0.0867 25 1 -0.3634 0.5871 0.8434 26 1 3.1263 -0.7996 -1.2055 27 1 1.6054 -1.7198 -1.2950 28 1 2.9229 -1.8426 -4.7316 29 1 3.1273 -0.7881 1.2118 30 1 1.6153 -1.7243 1.2886 31 1 1.7727 2.0725 1.8736 32 1 3.3439 1.2674 2.1734 33 1 3.5987 3.2645 3.8720 34 1 2.9413 0.3150 5.4367 35 1 1.1595 0.4346 5.3192 36 1 1.0679 -2.5023 3.2528 37 1 1.4689 -2.2668 4.9712 38 1 0.1306 -1.3524 4.2365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602628727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:14 Heat of formation + Delta-G solvation = -90.273793 kcal Electronic energy + Delta-G solvation = -16363.378100 eV Core-core repulsion = 13817.894328 eV Total energy + Delta-G solvation = -2545.483772 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57631 -37.69746 -36.36984 -34.40637 -32.08644 -31.06267 -28.76409 -27.07965 -26.18855 -24.54173 -22.28033 -21.11081 -20.31984 -18.70259 -18.37938 -16.89672 -16.41051 -16.09289 -15.60429 -15.45863 -14.94605 -14.65689 -14.33206 -14.05181 -13.72781 -13.33376 -13.11889 -12.93668 -12.76986 -12.67064 -12.51545 -12.22959 -12.16666 -12.06114 -11.89452 -11.58496 -11.40091 -11.09378 -10.93140 -10.87810 -10.53901 -9.47748 -8.18198 -6.27851 1.39711 1.42638 1.50371 2.41360 2.87256 3.15094 3.42420 3.62036 3.73377 4.04279 4.14364 4.23859 4.31503 4.47857 4.48652 4.51672 4.74227 4.78243 4.82526 4.88772 4.92761 4.98780 5.03497 5.08656 5.19903 5.26543 5.37352 5.44258 5.49711 5.54095 5.76562 5.86540 5.95404 6.02539 6.29393 6.84503 6.87658 7.40515 8.93845 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039244 B = 0.005689 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.320667 B = 4920.505645 C = 5240.517357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.069 4.069 3 H 0.052 0.948 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.063 3.937 14 N -0.498 5.498 15 C -0.001 4.001 16 C 0.104 3.896 17 H 0.084 0.916 18 O -0.581 6.581 19 C -0.108 4.108 20 C 0.051 3.949 21 H 0.038 0.962 22 C -0.131 4.131 23 H 0.039 0.961 24 H 0.037 0.963 25 H 0.064 0.936 26 H -0.018 1.018 27 H -0.010 1.010 28 H 0.262 0.738 29 H 0.015 0.985 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.394 0.606 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 5.468 16.577 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.191 1.191 13 C -0.065 4.065 14 N -0.223 5.223 15 C -0.130 4.130 16 C 0.045 3.955 17 H 0.102 0.898 18 O -0.388 6.388 19 C -0.146 4.146 20 C -0.058 4.058 21 H 0.056 0.944 22 C -0.188 4.188 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.000 1.000 27 H 0.008 0.992 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.244 0.756 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.119 4.898 16.845 17.817 hybrid contribution 1.069 0.357 -1.758 2.088 sum -2.050 5.255 15.087 16.107 Atomic orbital electron populations 1.21464 0.94389 1.00585 1.00418 1.20981 0.96881 0.98229 0.92727 0.93006 1.19006 0.93863 0.94776 0.92841 1.21591 1.34580 1.08593 0.91999 0.92034 1.25967 0.95199 0.96089 1.02700 1.70097 1.40230 1.22991 1.24380 0.85547 0.78996 0.78733 0.78063 1.19236 1.21010 1.19109 1.22213 0.96433 0.97674 0.90210 1.65379 1.53068 1.02546 1.01334 1.23891 0.97446 0.93103 0.98540 1.22553 0.87434 0.94182 0.91353 0.89816 1.86481 1.43684 1.42784 1.65891 1.22386 1.03747 0.91523 0.96955 1.22765 0.97199 0.95679 0.90121 0.94387 1.21681 0.99285 0.96657 1.01189 0.94234 0.94338 0.91666 0.99967 0.99162 0.92916 0.96656 0.91281 0.89713 0.94501 0.75562 0.90246 0.88327 0.93683 0.90539 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.28 8.90 71.98 0.64 -3.64 16 2 C -0.07 -2.90 2.28 -10.80 -0.02 -2.92 16 3 H 0.05 2.18 6.90 -2.39 -0.02 2.16 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.25 8.34 25.60 0.21 -30.04 16 6 H 0.06 3.37 7.08 -2.91 -0.02 3.34 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -57.87 13.29 21.45 0.28 -57.58 16 9 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.06 2.28 4.15 86.30 0.36 2.63 16 14 N -0.50 -14.60 4.60 -856.71 -3.94 -18.53 16 15 C 0.00 -0.03 5.31 86.45 0.46 0.43 16 16 C 0.10 2.22 4.42 31.49 0.14 2.36 16 17 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 18 O -0.58 -12.29 13.27 -148.98 -1.98 -14.26 16 19 C -0.11 -2.24 6.36 31.49 0.20 -2.04 16 20 C 0.05 1.25 2.88 45.07 0.13 1.38 16 21 H 0.04 1.04 7.98 -2.39 -0.02 1.02 16 22 C -0.13 -2.78 9.37 71.98 0.67 -2.10 16 23 H 0.04 1.63 6.83 -2.39 -0.02 1.61 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 2.18 7.87 -2.39 -0.02 2.16 16 26 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 27 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.02 0.59 7.97 -2.38 -0.02 0.57 16 30 H 0.07 2.51 7.34 -2.39 -0.02 2.50 16 31 H 0.08 2.26 7.60 -2.39 -0.02 2.24 16 32 H 0.04 1.10 7.83 -2.39 -0.02 1.09 16 33 H 0.39 5.28 9.11 -74.06 -0.67 4.61 16 34 H 0.08 1.63 7.98 -2.39 -0.02 1.62 16 35 H 0.10 1.68 7.83 -2.39 -0.02 1.66 16 36 H 0.04 1.07 7.38 -2.39 -0.02 1.05 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 Total: -1.00 -66.09 300.73 0.12 -65.97 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.34 Total: 9.45 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 3.39 Total: -31.73 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -3.65 Total: -76.12 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.98 Total: -14.26 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.09 0.12 -65.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602628727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.303 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds