Wall clock time and date at job start Sun Mar 29 2020 22:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47137 * 2 1 4 4 C 1.53005 * 109.47115 * 239.99386 * 2 1 3 5 5 C 1.50704 * 109.46503 * 65.00371 * 4 2 1 6 6 H 1.07990 * 120.00402 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99503 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00107 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00033 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46935 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47041 * 120.00003 * 9 7 5 12 12 H 1.48500 * 109.47233 * 240.00360 * 9 7 5 13 13 C 1.53005 * 109.46933 * 119.99958 * 2 1 3 14 14 N 1.46899 * 109.47062 * 185.39201 * 13 2 1 15 15 C 1.47442 * 111.00378 * 75.35183 * 14 13 2 16 16 C 1.54315 * 107.23158 * 123.25751 * 15 14 13 17 17 H 1.09000 * 110.70397 * 263.89651 * 16 15 14 18 18 O 1.42912 * 110.70282 * 140.66801 * 16 15 14 19 19 C 1.55140 * 103.02061 * 22.28527 * 16 15 14 20 20 C 1.47844 * 110.99823 * 196.19704 * 14 13 2 21 21 H 1.09000 * 110.37526 * 332.46129 * 20 14 13 22 22 C 1.53006 * 110.37472 * 94.80524 * 20 14 13 23 23 H 1.08999 * 109.47271 * 304.13134 * 1 2 3 24 24 H 1.09000 * 109.46839 * 64.13244 * 1 2 3 25 25 H 1.09001 * 109.46810 * 184.13091 * 1 2 3 26 26 H 1.09002 * 109.46930 * 184.99635 * 4 2 1 27 27 H 1.08997 * 109.47251 * 305.00371 * 4 2 1 28 28 H 0.97005 * 120.00135 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46863 * 305.38862 * 13 2 1 30 30 H 1.08991 * 109.47259 * 65.38927 * 13 2 1 31 31 H 1.09002 * 109.88786 * 242.66469 * 15 14 13 32 32 H 1.08999 * 109.88700 * 3.84792 * 15 14 13 33 33 H 0.96698 * 113.99708 * 61.45653 * 18 16 15 34 34 H 1.09005 * 110.99102 * 82.43731 * 19 16 15 35 35 H 1.09001 * 110.98661 * 206.21491 * 19 16 15 36 36 H 1.08996 * 109.46914 * 59.99900 * 22 20 14 37 37 H 1.09002 * 109.47040 * 180.02562 * 22 20 14 38 38 H 1.08996 * 109.46840 * 300.00028 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0808 0.9744 -2.3757 7 6 1.9933 -0.4019 -3.7282 8 7 2.6772 -1.5184 -3.8510 9 14 1.4985 0.5624 -5.2497 10 1 0.7412 1.7736 -4.8435 11 1 2.7165 0.9679 -5.9964 12 1 0.6451 -0.2874 -6.1185 13 6 2.0400 -0.7213 1.2493 14 7 3.5032 -0.6096 1.3162 15 6 3.9111 0.7413 1.7434 16 6 4.7882 0.5772 3.0024 17 1 4.1933 0.7086 3.9063 18 8 5.8831 1.4954 2.9786 19 6 5.2953 -0.8844 2.8871 20 6 4.0668 -1.5936 2.2648 21 1 3.3374 -1.8368 3.0374 22 6 4.5016 -2.8595 1.5235 23 1 -0.3634 0.5766 0.8506 24 1 -0.3633 0.4484 -0.9247 25 1 -0.3633 -1.0250 0.0740 26 1 3.1264 -0.7995 -1.2055 27 1 1.6054 -1.7199 -1.2951 28 1 2.9245 -1.8415 -4.7316 29 1 1.5999 -0.2661 2.1366 30 1 1.7576 -1.7729 1.2024 31 1 4.4851 1.2230 0.9518 32 1 3.0297 1.3372 1.9804 33 1 5.6167 2.4249 2.9718 34 1 6.1591 -0.9469 2.2251 35 1 5.5282 -1.2955 3.8694 36 1 5.2601 -2.6048 0.7835 37 1 4.9138 -3.5742 2.2359 38 1 3.6399 -3.3016 1.0233 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602628730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:18 Heat of formation + Delta-G solvation = -64.987188 kcal Electronic energy + Delta-G solvation = -16539.606000 eV Core-core repulsion = 13995.218737 eV Total energy + Delta-G solvation = -2544.387263 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.38746 -36.37997 -34.84207 -32.30439 -30.82835 -29.72045 -26.92266 -25.71236 -24.51813 -22.70138 -21.11508 -20.05027 -18.65639 -17.16489 -16.45563 -15.96622 -15.05652 -14.46808 -13.95392 -13.80054 -13.57043 -13.04296 -12.98875 -12.39432 -12.05316 -11.96644 -11.70286 -11.48347 -11.36619 -11.17936 -10.86362 -10.80216 -10.70739 -10.39084 -10.24415 -10.10592 -10.04911 -9.62074 -9.05099 -8.81274 -8.21533 -7.81143 -5.86241 -3.86475 3.37110 3.44613 3.48012 4.03334 4.32301 4.55677 4.68614 4.85419 5.05611 5.30872 5.48002 5.49162 5.59466 5.66580 5.72420 5.82385 5.93790 6.01542 6.09087 6.12159 6.23624 6.29591 6.32197 6.41654 6.51086 6.64660 6.99806 7.07049 7.31877 7.41451 7.57198 7.59801 7.88168 8.10308 8.24214 8.60028 9.21653 9.75508 11.24914 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029244 B = 0.006563 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.234965 B = 4265.272223 C = 4271.641759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.052 0.948 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.060 3.940 14 N -0.507 5.507 15 C 0.016 3.984 16 C 0.080 3.920 17 H 0.058 0.942 18 O -0.561 6.561 19 C -0.116 4.116 20 C 0.069 3.931 21 H 0.049 0.951 22 C -0.133 4.133 23 H 0.027 0.973 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.033 0.967 27 H 0.008 0.992 28 H 0.257 0.743 29 H 0.019 0.981 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.377 0.623 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 2.076 14.405 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.070 0.930 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.068 4.068 14 N -0.232 5.232 15 C -0.112 4.112 16 C 0.020 3.980 17 H 0.076 0.924 18 O -0.366 6.366 19 C -0.154 4.154 20 C -0.039 4.039 21 H 0.068 0.932 22 C -0.191 4.191 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.224 0.776 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.682 1.306 13.780 14.099 hybrid contribution -1.029 1.186 -0.176 1.580 sum 1.654 2.492 13.604 13.929 Atomic orbital electron populations 1.21731 0.96563 1.00386 1.00539 1.21201 0.94039 0.99190 0.95660 0.92797 1.19032 0.97444 0.94401 0.89203 1.21359 1.34192 1.08123 0.91427 0.92996 1.24990 0.95513 0.95100 0.98861 1.69987 1.39222 1.21264 1.22939 0.86665 0.78195 0.80152 0.83719 1.19939 1.21185 1.21219 1.22474 0.85982 1.00899 0.97451 1.63426 1.10888 1.01942 1.46903 1.23574 0.98827 0.92255 0.96567 1.23140 0.87797 0.90462 0.96627 0.92407 1.86516 1.33479 1.19240 1.97332 1.22755 0.99067 0.92291 1.01246 1.22527 0.94562 0.93960 0.92819 0.93249 1.21672 1.02281 0.95198 0.99967 0.95429 0.91566 0.93785 0.94846 0.97371 0.93349 0.96319 0.91407 0.89563 0.92704 0.77599 0.89500 0.90894 0.91592 0.93025 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.07 37.16 0.34 -2.21 16 2 C -0.08 -1.70 2.38 -90.61 -0.22 -1.91 16 3 H 0.05 1.14 7.44 -51.93 -0.39 0.76 16 4 C 0.04 0.95 4.40 -27.88 -0.12 0.82 16 5 C -0.51 -14.62 8.35 -34.44 -0.29 -14.91 16 6 H 0.05 1.45 7.07 -52.49 -0.37 1.08 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 9 Si 0.88 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.06 1.05 3.97 -3.82 -0.02 1.03 16 14 N -0.51 -8.66 4.16 -223.39 -0.93 -9.59 16 15 C 0.02 0.24 5.99 -2.84 -0.02 0.23 16 16 C 0.08 1.01 4.32 -24.91 -0.11 0.91 16 17 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 18 O -0.56 -7.04 13.39 -35.23 -0.47 -7.51 16 19 C -0.12 -1.51 6.22 -24.59 -0.15 -1.66 16 20 C 0.07 1.00 2.96 -66.19 -0.20 0.80 16 21 H 0.05 0.66 7.81 -51.93 -0.41 0.25 16 22 C -0.13 -1.93 9.59 37.16 0.36 -1.57 16 23 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 1.36 6.84 -51.93 -0.36 1.01 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.95 7.63 -51.93 -0.40 0.55 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.02 0.29 7.79 -51.93 -0.40 -0.11 16 30 H 0.07 1.21 7.99 -51.93 -0.42 0.79 16 31 H 0.09 1.43 8.06 -51.93 -0.42 1.02 16 32 H 0.05 0.78 7.19 -51.93 -0.37 0.41 16 33 H 0.38 3.11 9.11 45.56 0.42 3.53 16 34 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -31.71 302.81 -7.69 -39.40 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.04 Total: -0.29 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.52 Total: -16.95 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.19 Total: -36.28 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.47 Total: -7.51 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.71 -7.69 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602628730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.588 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds