Wall clock time and date at job start Sun Mar 29 2020 22:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47137 * 2 1 4 4 C 1.53005 * 109.47115 * 239.99386 * 2 1 3 5 5 C 1.50704 * 109.46503 * 65.00371 * 4 2 1 6 6 H 1.07990 * 120.00402 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99503 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00107 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00033 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46935 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47041 * 120.00003 * 9 7 5 12 12 H 1.48500 * 109.47233 * 240.00360 * 9 7 5 13 13 C 1.53005 * 109.46933 * 119.99958 * 2 1 3 14 14 N 1.46899 * 109.47062 * 185.39201 * 13 2 1 15 15 C 1.47442 * 111.00378 * 75.35183 * 14 13 2 16 16 C 1.54315 * 107.23158 * 123.25751 * 15 14 13 17 17 H 1.09000 * 110.70397 * 263.89651 * 16 15 14 18 18 O 1.42912 * 110.70282 * 140.66801 * 16 15 14 19 19 C 1.55140 * 103.02061 * 22.28527 * 16 15 14 20 20 C 1.47844 * 110.99823 * 196.19704 * 14 13 2 21 21 H 1.09000 * 110.37526 * 332.46129 * 20 14 13 22 22 C 1.53006 * 110.37472 * 94.80524 * 20 14 13 23 23 H 1.08999 * 109.47271 * 304.13134 * 1 2 3 24 24 H 1.09000 * 109.46839 * 64.13244 * 1 2 3 25 25 H 1.09001 * 109.46810 * 184.13091 * 1 2 3 26 26 H 1.09002 * 109.46930 * 184.99635 * 4 2 1 27 27 H 1.08997 * 109.47251 * 305.00371 * 4 2 1 28 28 H 0.97005 * 120.00135 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46863 * 305.38862 * 13 2 1 30 30 H 1.08991 * 109.47259 * 65.38927 * 13 2 1 31 31 H 1.09002 * 109.88786 * 242.66469 * 15 14 13 32 32 H 1.08999 * 109.88700 * 3.84792 * 15 14 13 33 33 H 0.96698 * 113.99708 * 61.45653 * 18 16 15 34 34 H 1.09005 * 110.99102 * 82.43731 * 19 16 15 35 35 H 1.09001 * 110.98661 * 206.21491 * 19 16 15 36 36 H 1.08996 * 109.46914 * 59.99900 * 22 20 14 37 37 H 1.09002 * 109.47040 * 180.02562 * 22 20 14 38 38 H 1.08996 * 109.46840 * 300.00028 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0808 0.9744 -2.3757 7 6 1.9933 -0.4019 -3.7282 8 7 2.6772 -1.5184 -3.8510 9 14 1.4985 0.5624 -5.2497 10 1 0.7412 1.7736 -4.8435 11 1 2.7165 0.9679 -5.9964 12 1 0.6451 -0.2874 -6.1185 13 6 2.0400 -0.7213 1.2493 14 7 3.5032 -0.6096 1.3162 15 6 3.9111 0.7413 1.7434 16 6 4.7882 0.5772 3.0024 17 1 4.1933 0.7086 3.9063 18 8 5.8831 1.4954 2.9786 19 6 5.2953 -0.8844 2.8871 20 6 4.0668 -1.5936 2.2648 21 1 3.3374 -1.8368 3.0374 22 6 4.5016 -2.8595 1.5235 23 1 -0.3634 0.5766 0.8506 24 1 -0.3633 0.4484 -0.9247 25 1 -0.3633 -1.0250 0.0740 26 1 3.1264 -0.7995 -1.2055 27 1 1.6054 -1.7199 -1.2951 28 1 2.9245 -1.8415 -4.7316 29 1 1.5999 -0.2661 2.1366 30 1 1.7576 -1.7729 1.2024 31 1 4.4851 1.2230 0.9518 32 1 3.0297 1.3372 1.9804 33 1 5.6167 2.4249 2.9718 34 1 6.1591 -0.9469 2.2251 35 1 5.5282 -1.2955 3.8694 36 1 5.2601 -2.6048 0.7835 37 1 4.9138 -3.5742 2.2359 38 1 3.6399 -3.3016 1.0233 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602628730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:17 Heat of formation + Delta-G solvation = -87.781692 kcal Electronic energy + Delta-G solvation = -16540.594444 eV Core-core repulsion = 13995.218737 eV Total energy + Delta-G solvation = -2545.375706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55406 -37.63561 -36.33496 -34.35055 -32.15240 -30.90829 -28.94438 -26.93971 -25.96747 -24.61612 -22.27737 -21.20109 -20.29702 -18.52537 -18.12542 -17.32472 -16.59950 -16.12238 -15.34084 -15.21800 -14.77659 -14.49046 -14.34325 -13.98360 -13.79229 -13.24669 -13.18802 -12.96366 -12.74490 -12.70530 -12.56647 -12.37446 -12.21256 -12.00369 -11.70654 -11.48615 -11.42180 -11.08462 -10.92359 -10.85066 -10.47425 -9.06395 -8.11504 -6.20068 1.39081 1.39627 1.52101 2.44187 2.94157 3.21217 3.29266 3.62730 3.78665 4.06731 4.18231 4.21006 4.36704 4.42086 4.50757 4.55836 4.70386 4.77922 4.81021 4.85687 4.91409 4.97930 5.01396 5.10982 5.22948 5.30476 5.40960 5.47570 5.51478 5.67496 5.94472 6.03292 6.19857 6.31536 6.38450 6.84733 6.98967 7.47031 9.00185 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029244 B = 0.006563 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.234965 B = 4265.272223 C = 4271.641759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 H 0.048 0.952 4 C 0.049 3.951 5 C -0.528 4.528 6 H 0.056 0.944 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.279 1.279 13 C 0.070 3.930 14 N -0.542 5.542 15 C 0.017 3.983 16 C 0.090 3.910 17 H 0.086 0.914 18 O -0.576 6.576 19 C -0.113 4.113 20 C 0.070 3.930 21 H 0.071 0.929 22 C -0.131 4.131 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.044 0.956 26 H -0.002 1.002 27 H -0.023 1.023 28 H 0.259 0.741 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.395 0.605 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.336 3.181 16.060 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.095 4.095 3 H 0.066 0.934 4 C 0.012 3.988 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.205 1.205 13 C -0.058 4.058 14 N -0.268 5.268 15 C -0.112 4.112 16 C 0.030 3.970 17 H 0.104 0.896 18 O -0.383 6.383 19 C -0.151 4.151 20 C -0.038 4.038 21 H 0.089 0.911 22 C -0.189 4.189 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.016 0.984 27 H -0.005 1.005 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.245 0.755 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.934 2.435 15.447 15.757 hybrid contribution -0.760 0.830 -0.702 1.326 sum 1.174 3.265 14.746 15.148 Atomic orbital electron populations 1.21648 0.94927 1.00987 1.01079 1.21058 0.95401 0.98328 0.94699 0.93376 1.18811 0.95028 0.93286 0.91689 1.21778 1.33928 1.08375 0.92577 0.92549 1.25923 0.95470 0.96126 1.02500 1.70134 1.40478 1.23047 1.23846 0.85528 0.77981 0.78963 0.79341 1.18619 1.20790 1.20517 1.22264 0.86669 1.00149 0.96724 1.63278 1.10695 1.03643 1.49143 1.23529 0.99434 0.91191 0.97022 1.23075 0.87493 0.90196 0.96188 0.89638 1.86476 1.33829 1.20732 1.97268 1.22743 0.97550 0.92819 1.02003 1.22579 0.95518 0.93048 0.92635 0.91147 1.21664 1.00748 0.96356 1.00126 0.91666 0.93681 0.93652 0.98358 1.00457 0.93221 0.93211 0.92142 0.92354 0.91612 0.75504 0.91529 0.88130 0.94060 0.89918 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.07 71.98 0.65 -4.06 16 2 C -0.08 -3.13 2.38 -10.79 -0.03 -3.16 16 3 H 0.05 2.03 7.44 -2.39 -0.02 2.01 16 4 C 0.05 2.66 4.40 29.85 0.13 2.79 16 5 C -0.53 -30.78 8.35 25.60 0.21 -30.57 16 6 H 0.06 3.16 7.07 -2.92 -0.02 3.14 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 8 N -0.93 -59.00 13.29 21.45 0.28 -58.71 16 9 Si 0.96 45.79 29.54 68.60 2.03 47.81 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 C 0.07 2.37 3.97 86.31 0.34 2.71 16 14 N -0.54 -18.36 4.16 -860.66 -3.58 -21.95 16 15 C 0.02 0.48 5.99 86.65 0.52 1.00 16 16 C 0.09 2.07 4.32 31.77 0.14 2.21 16 17 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 18 O -0.58 -13.30 13.39 -148.98 -2.00 -15.29 16 19 C -0.11 -2.73 6.22 31.98 0.20 -2.53 16 20 C 0.07 1.90 2.96 45.39 0.13 2.04 16 21 H 0.07 1.65 7.81 -2.39 -0.02 1.64 16 22 C -0.13 -3.81 9.59 71.98 0.69 -3.12 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.04 1.81 6.84 -2.39 -0.02 1.80 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.00 -0.12 7.63 -2.39 -0.02 -0.14 16 27 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 28 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 29 H 0.05 1.39 7.79 -2.39 -0.02 1.38 16 30 H 0.06 2.12 7.99 -2.39 -0.02 2.10 16 31 H 0.06 1.98 8.06 -2.39 -0.02 1.96 16 32 H 0.07 1.73 7.19 -2.39 -0.02 1.72 16 33 H 0.39 5.71 9.11 -74.06 -0.67 5.03 16 34 H 0.07 1.87 8.05 -2.38 -0.02 1.85 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.36 8.13 -2.39 -0.02 1.35 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -70.11 302.81 0.53 -69.58 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.34 Total: 10.98 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 3.46 Total: -32.42 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -3.30 Total: -80.66 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -2.00 Total: -15.29 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -70.11 0.53 -69.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602628730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.200 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds