Wall clock time and date at job start Sun Mar 29 2020 22:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.50704 * 109.47295 * 65.00435 * 4 2 1 6 6 H 1.08002 * 119.99563 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00100 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00222 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99904 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47134 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47008 * 120.00055 * 9 7 5 12 12 H 1.48498 * 109.47186 * 240.00307 * 9 7 5 13 13 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 14 14 N 1.46900 * 109.47171 * 294.99999 * 13 2 1 15 15 C 1.46904 * 110.99705 * 180.02562 * 14 13 2 16 16 H 1.08997 * 110.75711 * 37.01318 * 15 14 13 17 17 C 1.54383 * 110.84557 * 273.54347 * 15 14 13 18 18 O 1.43238 * 107.59039 * 220.45407 * 17 15 14 19 19 C 1.43651 * 109.96982 * 358.29155 * 18 17 15 20 20 H 1.08994 * 110.30734 * 265.51014 * 19 18 17 21 21 C 1.53001 * 110.30962 * 143.34197 * 19 18 17 22 22 C 1.54943 * 105.13709 * 24.42438 * 19 18 17 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46738 * 184.99930 * 4 2 1 27 27 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 28 28 H 0.96995 * 119.99658 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.47396 * 55.00290 * 13 2 1 30 30 H 1.09001 * 109.46992 * 174.99449 * 13 2 1 31 31 H 1.00898 * 110.99685 * 303.95444 * 14 13 2 32 32 H 1.09003 * 109.83441 * 339.96615 * 17 15 14 33 33 H 1.08997 * 109.83153 * 100.85076 * 17 15 14 34 34 H 1.08997 * 109.47081 * 61.45024 * 21 19 18 35 35 H 1.08997 * 109.46911 * 181.45494 * 21 19 18 36 36 H 1.08997 * 109.47209 * 301.45128 * 21 19 18 37 37 H 1.08997 * 111.12566 * 205.63981 * 22 19 18 38 38 H 1.09007 * 111.12588 * 81.47352 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9931 -0.4017 -3.7283 8 7 2.6762 -1.5189 -3.8512 9 14 1.4984 0.5627 -5.2496 10 1 0.7412 1.7739 -4.8434 11 1 2.7162 0.9682 -5.9964 12 1 0.6449 -0.2869 -6.1185 13 6 2.0401 -0.7212 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1259 -0.6266 3.6671 16 1 3.1063 -1.0751 3.5070 17 6 1.1095 -1.6847 4.1474 18 8 1.0371 -1.5985 5.5754 19 6 1.9524 -0.6000 6.0537 20 1 2.9002 -1.0591 6.3345 21 6 1.3490 0.1463 7.2452 22 6 2.1559 0.3671 4.8603 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1263 -0.7995 -1.2056 27 1 1.6053 -1.7198 -1.2952 28 1 2.9233 -1.8417 -4.7318 29 1 1.6055 -1.7199 1.2951 30 1 3.1264 -0.7995 1.2055 31 1 1.9882 0.9873 2.3966 32 1 0.1302 -1.4801 3.7146 33 1 1.4437 -2.6793 3.8521 34 1 1.1650 -0.5558 8.0584 35 1 2.0431 0.9170 7.5805 36 1 0.4089 0.6096 6.9455 37 1 3.1187 0.8739 4.9253 38 1 1.3392 1.0859 4.7935 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602702022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:49 Heat of formation + Delta-G solvation = -70.963899 kcal Electronic energy + Delta-G solvation = -15877.528908 eV Core-core repulsion = 13332.882476 eV Total energy + Delta-G solvation = -2544.646432 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.67023 -36.65236 -34.03701 -32.31459 -31.96175 -29.30703 -26.75579 -26.07098 -25.01666 -22.57818 -21.45819 -20.50754 -19.06821 -17.11892 -16.32534 -15.90898 -15.03132 -14.65758 -14.57073 -14.39813 -13.69441 -13.54270 -12.96212 -12.61587 -12.40124 -12.25139 -11.78438 -11.66662 -11.48835 -11.29278 -11.15117 -10.86319 -10.84205 -10.72980 -10.29798 -10.21648 -9.72727 -9.52093 -9.16406 -8.95409 -8.33926 -8.25573 -5.98412 -3.99592 3.31684 3.39331 3.43363 3.71200 4.22533 4.36686 4.48498 4.71236 4.90745 5.12941 5.18891 5.20976 5.37526 5.49265 5.53289 5.63849 5.66163 5.77214 5.85007 5.88996 5.99508 6.06590 6.12651 6.39226 6.52073 6.66407 6.96529 7.00617 7.15845 7.17836 7.30358 7.55593 7.68509 7.83794 8.01731 8.45554 9.07020 9.64000 11.13179 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.071598 B = 0.004271 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.979393 B = 6553.999983 C = 6639.188396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.062 3.938 14 N -0.675 5.675 15 C 0.052 3.948 16 H 0.057 0.943 17 C 0.060 3.940 18 O -0.383 6.383 19 C 0.077 3.923 20 H 0.067 0.933 21 C -0.150 4.150 22 C -0.153 4.153 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.012 0.988 27 H 0.016 0.984 28 H 0.259 0.741 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.342 0.658 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 3.045 17.960 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.067 4.067 14 N -0.307 5.307 15 C -0.059 4.059 16 H 0.075 0.925 17 C -0.018 4.018 18 O -0.303 6.303 19 C 0.020 3.980 20 H 0.085 0.915 21 C -0.207 4.207 22 C -0.191 4.191 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.160 0.840 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.238 2.522 17.992 18.210 hybrid contribution 0.994 0.668 -1.227 1.715 sum -0.244 3.190 16.765 17.068 Atomic orbital electron populations 1.21596 0.95651 1.00628 1.00191 1.21205 0.96066 0.98900 0.93955 0.92798 1.19130 0.95902 0.95622 0.90446 1.21272 1.34498 1.08302 0.90966 0.92494 1.25028 0.95337 0.95106 0.99133 1.69979 1.39179 1.21249 1.23279 0.86569 0.78243 0.80132 0.83264 1.19737 1.21124 1.21064 1.22246 0.97254 0.97801 0.89374 1.60548 1.63548 1.05731 1.00880 1.23054 0.96747 0.95063 0.91044 0.92548 1.23167 1.00486 0.97960 0.80153 1.88408 1.62485 1.58523 1.20846 1.22841 0.92770 0.88222 0.94197 0.91474 1.21875 1.01610 0.99941 0.97293 1.23468 1.03288 0.98477 0.93869 0.93940 0.92719 0.94121 0.96945 0.96516 0.93147 0.91443 0.95581 0.83976 0.89864 0.91812 0.91987 0.91402 0.91805 0.90229 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 C 0.06 1.04 4.93 -3.83 -0.02 1.03 16 14 N -0.68 -9.47 5.75 -104.67 -0.60 -10.07 16 15 C 0.05 0.64 3.29 -65.76 -0.22 0.42 16 16 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 17 C 0.06 0.78 7.50 37.88 0.28 1.07 16 18 O -0.38 -5.13 11.04 -35.23 -0.39 -5.52 16 19 C 0.08 0.81 4.08 -25.70 -0.10 0.70 16 20 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 21 C -0.15 -1.27 9.62 37.16 0.36 -0.92 16 22 C -0.15 -1.54 6.02 -24.48 -0.15 -1.69 16 23 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 24 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 30 H 0.03 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.34 4.47 8.51 -39.29 -0.33 4.14 16 32 H 0.08 1.17 8.02 -51.93 -0.42 0.76 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 LS Contribution 306.25 15.07 4.62 4.62 Total: -1.00 -29.87 306.25 -7.83 -37.70 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.92 Total: -1.20 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -0.25 Total: -15.93 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.13 Total: -36.34 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.39 Total: -5.52 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.87 -7.83 -37.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602702022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.261 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds