Wall clock time and date at job start Sun Mar 29 2020 22:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.50704 * 109.47295 * 65.00435 * 4 2 1 6 6 H 1.08002 * 119.99563 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00100 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00222 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99904 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47134 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47008 * 120.00055 * 9 7 5 12 12 H 1.48498 * 109.47186 * 240.00307 * 9 7 5 13 13 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 14 14 N 1.46900 * 109.47171 * 294.99999 * 13 2 1 15 15 C 1.46904 * 110.99705 * 180.02562 * 14 13 2 16 16 H 1.08997 * 110.75711 * 37.01318 * 15 14 13 17 17 C 1.54383 * 110.84557 * 273.54347 * 15 14 13 18 18 O 1.43238 * 107.59039 * 220.45407 * 17 15 14 19 19 C 1.43651 * 109.96982 * 358.29155 * 18 17 15 20 20 H 1.08994 * 110.30734 * 265.51014 * 19 18 17 21 21 C 1.53001 * 110.30962 * 143.34197 * 19 18 17 22 22 C 1.54943 * 105.13709 * 24.42438 * 19 18 17 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46738 * 184.99930 * 4 2 1 27 27 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 28 28 H 0.96995 * 119.99658 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.47396 * 55.00290 * 13 2 1 30 30 H 1.09001 * 109.46992 * 174.99449 * 13 2 1 31 31 H 1.00898 * 110.99685 * 303.95444 * 14 13 2 32 32 H 1.09003 * 109.83441 * 339.96615 * 17 15 14 33 33 H 1.08997 * 109.83153 * 100.85076 * 17 15 14 34 34 H 1.08997 * 109.47081 * 61.45024 * 21 19 18 35 35 H 1.08997 * 109.46911 * 181.45494 * 21 19 18 36 36 H 1.08997 * 109.47209 * 301.45128 * 21 19 18 37 37 H 1.08997 * 111.12566 * 205.63981 * 22 19 18 38 38 H 1.09007 * 111.12588 * 81.47352 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9931 -0.4017 -3.7283 8 7 2.6762 -1.5189 -3.8512 9 14 1.4984 0.5627 -5.2496 10 1 0.7412 1.7739 -4.8434 11 1 2.7162 0.9682 -5.9964 12 1 0.6449 -0.2869 -6.1185 13 6 2.0401 -0.7212 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1259 -0.6266 3.6671 16 1 3.1063 -1.0751 3.5070 17 6 1.1095 -1.6847 4.1474 18 8 1.0371 -1.5985 5.5754 19 6 1.9524 -0.6000 6.0537 20 1 2.9002 -1.0591 6.3345 21 6 1.3490 0.1463 7.2452 22 6 2.1559 0.3671 4.8603 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1263 -0.7995 -1.2056 27 1 1.6053 -1.7198 -1.2952 28 1 2.9233 -1.8417 -4.7318 29 1 1.6055 -1.7199 1.2951 30 1 3.1264 -0.7995 1.2055 31 1 1.9882 0.9873 2.3966 32 1 0.1302 -1.4801 3.7146 33 1 1.4437 -2.6793 3.8521 34 1 1.1650 -0.5558 8.0584 35 1 2.0431 0.9170 7.5805 36 1 0.4089 0.6096 6.9455 37 1 3.1187 0.8739 4.9253 38 1 1.3392 1.0859 4.7935 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602702022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:49 Heat of formation + Delta-G solvation = -90.332513 kcal Electronic energy + Delta-G solvation = -15878.368794 eV Core-core repulsion = 13332.882476 eV Total energy + Delta-G solvation = -2545.486318 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62519 -38.10950 -35.62810 -34.00190 -32.99654 -30.53752 -28.65957 -26.93216 -26.57668 -24.41043 -22.34442 -21.50956 -20.72459 -18.50261 -18.01820 -16.95405 -16.52472 -16.05861 -15.85357 -15.74766 -14.94046 -14.81342 -14.36723 -14.07855 -13.44009 -13.34438 -13.26757 -13.16050 -12.81299 -12.67942 -12.65677 -12.26814 -12.20041 -12.05535 -11.87697 -11.69166 -11.50051 -11.08564 -10.88630 -10.54106 -10.46985 -9.43990 -8.17717 -6.26757 1.40123 1.40849 1.53725 2.42044 2.79470 3.15937 3.17767 3.45615 3.87108 4.06886 4.13455 4.18385 4.27513 4.38324 4.45967 4.53326 4.68449 4.78049 4.83350 4.84518 4.89599 4.98833 4.99944 5.03047 5.17997 5.29022 5.32274 5.46327 5.51117 5.55909 5.80754 5.88855 6.01378 6.08189 6.30752 6.44869 6.89681 7.41758 8.94594 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.071598 B = 0.004271 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.979393 B = 6553.999983 C = 6639.188396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 H 0.057 0.943 4 C 0.031 3.969 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.076 3.924 14 N -0.671 5.671 15 C 0.051 3.949 16 H 0.058 0.942 17 C 0.060 3.940 18 O -0.402 6.402 19 C 0.069 3.931 20 H 0.077 0.923 21 C -0.147 4.147 22 C -0.142 4.142 23 H 0.067 0.933 24 H 0.037 0.963 25 H 0.033 0.967 26 H -0.013 1.013 27 H -0.011 1.011 28 H 0.262 0.738 29 H 0.060 0.940 30 H 0.022 0.978 31 H 0.351 0.649 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 4.641 18.884 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.007 4.007 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.053 4.053 14 N -0.304 5.304 15 C -0.060 4.060 16 H 0.076 0.924 17 C -0.018 4.018 18 O -0.322 6.322 19 C 0.012 3.988 20 H 0.095 0.905 21 C -0.204 4.204 22 C -0.180 4.180 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.005 0.995 27 H 0.007 0.993 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.170 0.830 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.419 4.135 18.938 19.436 hybrid contribution 1.064 0.141 -1.455 1.808 sum -0.355 4.276 17.483 18.002 Atomic orbital electron populations 1.21497 0.94743 1.00334 1.00559 1.21012 0.96667 0.98549 0.93022 0.92452 1.19028 0.94144 0.94695 0.92799 1.21676 1.34249 1.08578 0.92046 0.92007 1.25960 0.95292 0.96109 1.02696 1.70111 1.40423 1.22976 1.24209 0.85450 0.78057 0.78901 0.78968 1.18495 1.20538 1.20641 1.21922 0.96721 0.97328 0.89345 1.60422 1.63670 1.05982 1.00299 1.23072 0.96360 0.95600 0.90928 0.92415 1.23097 1.00027 0.98204 0.80441 1.88393 1.63474 1.59688 1.20676 1.23106 0.92888 0.87931 0.94883 0.90518 1.21878 1.01822 1.00252 0.96423 1.23439 1.04531 0.97844 0.92204 0.91403 0.94341 0.94760 0.99488 0.99267 0.92967 0.92180 0.95989 0.82961 0.91118 0.92068 0.91991 0.89148 0.92375 0.88059 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 2 C -0.07 -2.95 2.48 -10.79 -0.03 -2.98 16 3 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.03 1.62 4.45 29.85 0.13 1.75 16 5 C -0.53 -29.76 8.41 25.60 0.22 -29.54 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.94 -57.36 13.29 21.45 0.28 -57.08 16 9 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 C 0.08 2.53 4.93 86.30 0.43 2.96 16 14 N -0.67 -17.70 5.75 -485.07 -2.79 -20.48 16 15 C 0.05 1.17 3.29 46.18 0.15 1.32 16 16 H 0.06 1.35 7.91 -2.39 -0.02 1.33 16 17 C 0.06 1.52 7.50 72.45 0.54 2.07 16 18 O -0.40 -10.32 11.04 -148.98 -1.64 -11.97 16 19 C 0.07 1.29 4.08 31.26 0.13 1.41 16 20 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 21 C -0.15 -2.14 9.62 71.98 0.69 -1.45 16 22 C -0.14 -2.49 6.02 32.05 0.19 -2.30 16 23 H 0.07 2.21 7.75 -2.39 -0.02 2.19 16 24 H 0.04 1.55 6.95 -2.39 -0.02 1.54 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 27 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 28 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.06 2.09 8.13 -2.38 -0.02 2.07 16 30 H 0.02 0.75 8.09 -2.39 -0.02 0.73 16 31 H 0.35 8.33 8.51 -89.70 -0.76 7.56 16 32 H 0.07 1.96 8.02 -2.39 -0.02 1.94 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.59 8.06 -2.38 -0.02 1.58 16 Total: -1.00 -64.10 306.25 1.68 -62.42 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.24 Total: 10.78 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 3.56 Total: -30.17 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -2.50 Total: -77.56 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -1.64 Total: -11.97 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -64.10 1.68 -62.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602702022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.911 kcal (2) G-P(sol) polarization free energy of solvation -64.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds