Wall clock time and date at job start Sun Mar 29 2020 22:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46755 * 2 1 4 4 C 1.53007 * 109.46891 * 240.00691 * 2 1 3 5 5 C 1.50697 * 109.46894 * 64.99712 * 4 2 1 6 6 H 1.08002 * 120.00599 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99675 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 C 1.52991 * 109.47569 * 120.00329 * 2 1 3 14 14 N 1.46902 * 109.47497 * 295.00233 * 13 2 1 15 15 C 1.46895 * 111.00447 * 179.97438 * 14 13 2 16 16 H 1.09004 * 110.45896 * 34.29838 * 15 14 13 17 17 C 1.54476 * 110.50934 * 271.69491 * 15 14 13 18 18 O 1.44648 * 104.69781 * 217.47254 * 17 15 14 19 19 C 1.44426 * 105.36629 * 40.34654 * 18 17 15 20 20 H 1.08997 * 110.46663 * 78.44603 * 19 18 17 21 21 C 1.53002 * 110.37515 * 200.73686 * 19 18 17 22 22 C 1.54487 * 104.80330 * 319.56703 * 19 18 17 23 23 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46926 * 299.99258 * 1 2 3 25 25 H 1.08994 * 109.47360 * 59.99642 * 1 2 3 26 26 H 1.08995 * 109.46729 * 304.99704 * 4 2 1 27 27 H 1.09007 * 109.46460 * 184.99560 * 4 2 1 28 28 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47367 * 55.00255 * 13 2 1 30 30 H 1.09000 * 109.47717 * 174.99920 * 13 2 1 31 31 H 1.00901 * 110.99772 * 303.95846 * 14 13 2 32 32 H 1.09001 * 110.37359 * 336.20594 * 17 15 14 33 33 H 1.09003 * 110.37705 * 98.54675 * 17 15 14 34 34 H 1.08993 * 109.47287 * 175.38083 * 21 19 18 35 35 H 1.09004 * 109.46880 * 295.38133 * 21 19 18 36 36 H 1.08996 * 109.46978 * 55.37592 * 21 19 18 37 37 H 1.08999 * 110.51088 * 265.33076 * 22 19 18 38 38 H 1.09002 * 110.50922 * 142.62481 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4766 6 1 1.0805 0.9748 -2.3756 7 6 1.9931 -0.4013 -3.7283 8 7 1.6447 0.2777 -4.7994 9 14 2.9635 -1.9879 -3.9031 10 1 4.4169 -1.6844 -3.8783 11 1 2.6289 -2.8992 -2.7792 12 1 2.6161 -2.6414 -5.1905 13 6 2.0401 -0.7213 1.2491 14 7 1.6515 0.0372 2.4456 15 6 2.1250 -0.6273 3.6671 16 1 3.0831 -1.1155 3.4884 17 6 1.0808 -1.6507 4.1659 18 8 1.1277 -1.5497 5.6081 19 6 1.2542 -0.1386 5.8889 20 1 0.2890 0.3578 5.7890 21 6 1.8195 0.0762 7.2944 22 6 2.2428 0.3885 4.8253 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6054 -1.7196 -1.2953 27 1 3.1264 -0.7993 -1.2057 28 1 1.8919 -0.0452 -5.6800 29 1 1.6056 -1.7198 1.2950 30 1 3.1264 -0.7995 1.2054 31 1 1.9882 0.9872 2.3967 32 1 0.0880 -1.3890 3.7998 33 1 1.3517 -2.6565 3.8446 34 1 1.9857 1.1405 7.4604 35 1 1.1113 -0.3005 8.0324 36 1 2.7643 -0.4586 7.3916 37 1 3.2584 0.4009 5.2207 38 1 1.9497 1.3840 4.4915 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602702024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:52 Heat of formation + Delta-G solvation = -66.394702 kcal Electronic energy + Delta-G solvation = -15938.300238 eV Core-core repulsion = 13393.851941 eV Total energy + Delta-G solvation = -2544.448297 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.68960 -36.74588 -34.09826 -32.31097 -31.99299 -29.41785 -27.27877 -26.08720 -25.01391 -22.27438 -21.47686 -20.81141 -19.08262 -16.81275 -16.38943 -15.83051 -15.68774 -15.06686 -14.47236 -14.09802 -13.87257 -13.48618 -13.06928 -12.61394 -12.49329 -12.29170 -11.89794 -11.79245 -11.71758 -11.39681 -11.15523 -10.95533 -10.85218 -10.65563 -10.37799 -9.93916 -9.84281 -9.67117 -9.42792 -9.06594 -8.51889 -8.30439 -6.02329 -3.99344 3.30807 3.38654 3.42262 3.75229 4.28913 4.41031 4.46522 4.56943 4.87042 5.07115 5.20474 5.23930 5.31223 5.44631 5.49770 5.54279 5.63492 5.68627 5.80089 5.83828 5.88713 5.93998 6.00370 6.26811 6.39083 6.55964 6.69748 6.84888 7.01703 7.12965 7.21602 7.28029 7.44951 7.52595 7.82386 8.56997 9.03334 9.60561 11.11113 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.058573 B = 0.004642 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.921584 B = 6030.108007 C = 6188.779411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.266 1.266 12 H -0.288 1.288 13 C 0.060 3.940 14 N -0.677 5.677 15 C 0.052 3.948 16 H 0.056 0.944 17 C 0.055 3.945 18 O -0.378 6.378 19 C 0.074 3.926 20 H 0.070 0.930 21 C -0.147 4.147 22 C -0.152 4.152 23 H 0.039 0.961 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.016 0.984 27 H 0.008 0.992 28 H 0.262 0.738 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.342 0.658 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 -0.977 20.342 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.191 1.191 12 H -0.214 1.214 13 C -0.069 4.069 14 N -0.310 5.310 15 C -0.059 4.059 16 H 0.074 0.926 17 C -0.022 4.022 18 O -0.297 6.297 19 C 0.016 3.984 20 H 0.088 0.912 21 C -0.204 4.204 22 C -0.190 4.190 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.034 0.966 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.161 0.839 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.483 -1.439 20.345 20.401 hybrid contribution 1.565 -0.494 -0.590 1.744 sum 2.049 -1.933 19.755 19.955 Atomic orbital electron populations 1.21601 0.95207 1.00673 1.00709 1.21013 0.96411 0.99000 0.92856 0.92208 1.19616 0.95351 0.96271 0.93482 1.21129 1.35348 1.09521 0.89096 0.90825 1.25033 0.95716 0.96893 0.95961 1.69916 1.47196 1.39316 0.98013 0.86806 0.80566 0.84539 0.77506 1.20450 1.19079 1.21442 1.22261 0.97163 0.97833 0.89648 1.60592 1.63771 1.05699 1.00918 1.22888 0.97047 0.95208 0.90756 0.92649 1.23506 0.99449 0.99243 0.80016 1.89133 1.94949 1.23693 1.21964 1.22892 0.97896 0.82641 0.94980 0.91200 1.21815 1.01615 1.01855 0.95118 1.23186 1.00404 0.99764 0.95675 0.94192 0.93717 0.92198 0.96582 0.97414 0.92821 0.91488 0.95629 0.83897 0.90806 0.89514 0.91233 0.91972 0.91917 0.90636 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.07 -1.43 2.48 -90.62 -0.22 -1.65 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.46 8.96 -34.44 -0.31 -14.77 16 6 H 0.07 2.23 7.30 -52.49 -0.38 1.84 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -27.97 13.96 55.43 0.77 -27.20 16 9 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 C 0.06 0.94 4.93 -3.83 -0.02 0.93 16 14 N -0.68 -9.00 5.74 -105.08 -0.60 -9.60 16 15 C 0.05 0.61 3.43 -66.15 -0.23 0.38 16 16 H 0.06 0.68 7.85 -51.93 -0.41 0.27 16 17 C 0.06 0.68 7.35 37.93 0.28 0.96 16 18 O -0.38 -4.85 11.35 -35.23 -0.40 -5.25 16 19 C 0.07 0.75 3.93 -25.95 -0.10 0.65 16 20 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 21 C -0.15 -1.19 9.52 37.16 0.35 -0.84 16 22 C -0.15 -1.49 6.30 -25.16 -0.16 -1.65 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 25 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.40 8.08 -51.93 -0.42 -0.01 16 31 H 0.34 4.26 8.12 -39.29 -0.32 3.94 16 32 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 38 H 0.08 0.76 7.58 -51.93 -0.39 0.37 16 LS Contribution 301.82 15.07 4.55 4.55 Total: -1.00 -30.27 301.82 -7.45 -37.72 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.83 Total: -0.83 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -0.27 Total: -16.55 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.17 Total: -36.80 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.40 Total: -5.25 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.27 -7.45 -37.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602702024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.671 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds