Wall clock time and date at job start Sun Mar 29 2020 22:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46755 * 2 1 4 4 C 1.53007 * 109.46891 * 240.00691 * 2 1 3 5 5 C 1.50697 * 109.46894 * 64.99712 * 4 2 1 6 6 H 1.08002 * 120.00599 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99675 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 C 1.52991 * 109.47569 * 120.00329 * 2 1 3 14 14 N 1.46902 * 109.47497 * 295.00233 * 13 2 1 15 15 C 1.46895 * 111.00447 * 179.97438 * 14 13 2 16 16 H 1.09004 * 110.45896 * 34.29838 * 15 14 13 17 17 C 1.54476 * 110.50934 * 271.69491 * 15 14 13 18 18 O 1.44648 * 104.69781 * 217.47254 * 17 15 14 19 19 C 1.44426 * 105.36629 * 40.34654 * 18 17 15 20 20 H 1.08997 * 110.46663 * 78.44603 * 19 18 17 21 21 C 1.53002 * 110.37515 * 200.73686 * 19 18 17 22 22 C 1.54487 * 104.80330 * 319.56703 * 19 18 17 23 23 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46926 * 299.99258 * 1 2 3 25 25 H 1.08994 * 109.47360 * 59.99642 * 1 2 3 26 26 H 1.08995 * 109.46729 * 304.99704 * 4 2 1 27 27 H 1.09007 * 109.46460 * 184.99560 * 4 2 1 28 28 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47367 * 55.00255 * 13 2 1 30 30 H 1.09000 * 109.47717 * 174.99920 * 13 2 1 31 31 H 1.00901 * 110.99772 * 303.95846 * 14 13 2 32 32 H 1.09001 * 110.37359 * 336.20594 * 17 15 14 33 33 H 1.09003 * 110.37705 * 98.54675 * 17 15 14 34 34 H 1.08993 * 109.47287 * 175.38083 * 21 19 18 35 35 H 1.09004 * 109.46880 * 295.38133 * 21 19 18 36 36 H 1.08996 * 109.46978 * 55.37592 * 21 19 18 37 37 H 1.08999 * 110.51088 * 265.33076 * 22 19 18 38 38 H 1.09002 * 110.50922 * 142.62481 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4766 6 1 1.0805 0.9748 -2.3756 7 6 1.9931 -0.4013 -3.7283 8 7 1.6447 0.2777 -4.7994 9 14 2.9635 -1.9879 -3.9031 10 1 4.4169 -1.6844 -3.8783 11 1 2.6289 -2.8992 -2.7792 12 1 2.6161 -2.6414 -5.1905 13 6 2.0401 -0.7213 1.2491 14 7 1.6515 0.0372 2.4456 15 6 2.1250 -0.6273 3.6671 16 1 3.0831 -1.1155 3.4884 17 6 1.0808 -1.6507 4.1659 18 8 1.1277 -1.5497 5.6081 19 6 1.2542 -0.1386 5.8889 20 1 0.2890 0.3578 5.7890 21 6 1.8195 0.0762 7.2944 22 6 2.2428 0.3885 4.8253 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6054 -1.7196 -1.2953 27 1 3.1264 -0.7993 -1.2057 28 1 1.8919 -0.0452 -5.6800 29 1 1.6056 -1.7198 1.2950 30 1 3.1264 -0.7995 1.2054 31 1 1.9882 0.9872 2.3967 32 1 0.0880 -1.3890 3.7998 33 1 1.3517 -2.6565 3.8446 34 1 1.9857 1.1405 7.4604 35 1 1.1113 -0.3005 8.0324 36 1 2.7643 -0.4586 7.3916 37 1 3.2584 0.4009 5.2207 38 1 1.9497 1.3840 4.4915 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602702024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:52 Heat of formation + Delta-G solvation = -86.814800 kcal Electronic energy + Delta-G solvation = -15939.185719 eV Core-core repulsion = 13393.851941 eV Total energy + Delta-G solvation = -2545.333779 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.58678 -38.12140 -35.59099 -34.07338 -32.96673 -30.65622 -29.03497 -26.89213 -26.46709 -23.99980 -22.37534 -21.75073 -20.66580 -18.93350 -17.32720 -16.77239 -16.65791 -16.31677 -16.10314 -15.48317 -15.25492 -14.92912 -14.39806 -14.02247 -13.62792 -13.32739 -13.21298 -13.08592 -12.88834 -12.73524 -12.52577 -12.27927 -12.08468 -11.90052 -11.76855 -11.67448 -11.44570 -11.16917 -11.00810 -10.73883 -10.73196 -9.38219 -8.26115 -6.28410 1.35473 1.37759 1.49293 2.37597 2.88112 3.09207 3.27706 3.56149 3.79472 4.05617 4.12917 4.23466 4.29851 4.39344 4.48842 4.50875 4.71256 4.75687 4.80126 4.86388 4.89953 4.94975 4.99500 5.01187 5.10894 5.12777 5.29109 5.39134 5.41415 5.55120 5.70197 5.72940 5.83630 6.11705 6.34756 6.46712 6.79474 7.35219 8.90677 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.058573 B = 0.004642 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.921584 B = 6030.108007 C = 6188.779411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 H 0.052 0.948 4 C -0.008 4.008 5 C -0.518 4.518 6 H 0.035 0.965 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.247 1.247 12 H -0.286 1.286 13 C 0.073 3.927 14 N -0.676 5.676 15 C 0.052 3.948 16 H 0.056 0.944 17 C 0.054 3.946 18 O -0.396 6.396 19 C 0.066 3.934 20 H 0.070 0.930 21 C -0.143 4.143 22 C -0.146 4.146 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.026 0.974 26 H 0.017 0.983 27 H 0.014 0.986 28 H 0.264 0.736 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.349 0.651 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 -1.935 22.280 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 H 0.071 0.929 4 C -0.046 4.046 5 C -0.557 4.557 6 H 0.053 0.947 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.171 1.171 12 H -0.212 1.212 13 C -0.056 4.056 14 N -0.310 5.310 15 C -0.058 4.058 16 H 0.074 0.926 17 C -0.023 4.023 18 O -0.316 6.316 19 C 0.009 3.991 20 H 0.088 0.912 21 C -0.201 4.201 22 C -0.184 4.184 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.168 0.832 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.566 -2.389 22.314 22.496 hybrid contribution 1.156 -0.100 -1.164 1.644 sum 2.722 -2.488 21.150 21.469 Atomic orbital electron populations 1.21503 0.95064 1.00643 1.00127 1.20887 0.96466 0.98548 0.92965 0.92938 1.19577 0.95717 0.95919 0.93338 1.21460 1.34301 1.08644 0.91247 0.94678 1.26005 0.97093 1.00890 0.95557 1.70074 1.49137 1.41626 0.98720 0.85695 0.79173 0.79975 0.78006 1.19294 1.17086 1.21234 1.21974 0.97183 0.97507 0.88904 1.60499 1.63984 1.05923 1.00555 1.22893 0.96743 0.95640 0.90531 0.92580 1.23487 0.99129 0.99603 0.80079 1.89123 1.95034 1.25369 1.22055 1.23095 0.98253 0.81447 0.96304 0.91214 1.21821 1.01339 1.03149 0.93747 1.23170 1.01037 0.99535 0.94609 0.93900 0.91496 0.95472 0.96436 0.96718 0.92690 0.91311 0.95188 0.83165 0.91675 0.89251 0.89297 0.91980 0.92041 0.89415 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 8.89 71.98 0.64 -3.68 16 2 C -0.07 -2.62 2.48 -10.79 -0.03 -2.65 16 3 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.01 -0.35 3.52 29.85 0.10 -0.25 16 5 C -0.52 -29.75 8.96 25.60 0.23 -29.52 16 6 H 0.03 2.22 7.30 -2.91 -0.02 2.20 16 7 C 0.00 0.04 5.47 84.65 0.46 0.50 16 8 N -0.95 -60.40 13.96 21.45 0.30 -60.11 16 9 Si 0.95 44.56 27.47 68.60 1.88 46.45 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 13 C 0.07 2.16 4.93 86.30 0.43 2.58 16 14 N -0.68 -16.34 5.74 -486.36 -2.79 -19.14 16 15 C 0.05 1.11 3.43 45.93 0.16 1.26 16 16 H 0.06 1.21 7.85 -2.38 -0.02 1.19 16 17 C 0.05 1.24 7.35 72.48 0.53 1.77 16 18 O -0.40 -9.49 11.35 -148.98 -1.69 -11.18 16 19 C 0.07 1.21 3.93 31.10 0.12 1.33 16 20 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 21 C -0.14 -1.98 9.52 71.98 0.69 -1.30 16 22 C -0.15 -2.45 6.30 31.61 0.20 -2.25 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.07 2.16 7.75 -2.38 -0.02 2.14 16 25 H 0.03 1.15 6.95 -2.39 -0.02 1.14 16 26 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 27 H 0.01 0.65 7.57 -2.38 -0.02 0.64 16 28 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.03 0.86 8.08 -2.39 -0.02 0.85 16 31 H 0.35 7.79 8.12 -89.69 -0.73 7.06 16 32 H 0.06 1.58 8.06 -2.39 -0.02 1.57 16 33 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 1.29 7.87 -2.39 -0.02 1.27 16 38 H 0.09 1.41 7.58 -2.39 -0.02 1.39 16 Total: -1.00 -65.38 301.82 1.46 -63.92 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.22 Total: 12.25 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 3.53 Total: -32.19 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -2.49 Total: -79.24 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.69 Total: -11.18 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -65.38 1.46 -63.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602702024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.896 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds